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Homology
BLAST of mRNA_P-littoralis_Contig174.78.2 vs. uniprot
Match: D7FYS9_ECTSI (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYS9_ECTSI) HSP 1 Score: 202 bits (515), Expect = 4.040e-61 Identity = 102/116 (87.93%), Postives = 111/116 (95.69%), Query Frame = 1
Query: 1 MATPVGSGPVVQDVAPKGGFPKIQISRQLPAGRGPRGSVVLGLVTLTMAVGYYKLGQANKGRRAEKHEKRMARIALMPMLQAEEDRKAVLTKRFNMQLQRALHESLDTWKEEEELN 348
MATPVG+GP+VQDVAPKGGFPK+QISRQLP+GRGPRGSVVLGLVT+TMAVGYYKLGQANK RRAE+HEKR+ARIALMPMLQAEEDRKAVL KRFN QLQ+ LHESL+ WKEEEELN
Sbjct: 1 MATPVGTGPIVQDVAPKGGFPKVQISRQLPSGRGPRGSVVLGLVTVTMAVGYYKLGQANKARRAEQHEKRLARIALMPMLQAEEDRKAVLAKRFNAQLQKGLHESLNAWKEEEELN 116
BLAST of mRNA_P-littoralis_Contig174.78.2 vs. uniprot
Match: A0A061QUA6_9CHLO (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061QUA6_9CHLO) HSP 1 Score: 81.3 bits (199), Expect = 8.640e-15 Identity = 43/102 (42.16%), Postives = 68/102 (66.67%), Query Frame = 1
Query: 25 PVVQDVAPKGGFPKIQISRQLPAGRGPRGSVVLGLVTLTMAVGYYKLGQANKGRRAEKHEKRMARIALMPMLQAEEDRKAVLTKRFNMQLQRALHESLDTWK 330
PV+QD P GGFP I+I+R++P GP G+ + G+ L M+ G+Y +GQ N RRA+K E+ R AL+P LQAEEDR+ + K+ ++ + ++ + +D W+
Sbjct: 19 PVLQDGPPPGGFPSIRIARRIP-NTGPSGAAIFGVGALVMSYGFYLVGQTNIQRRADKAEREHVRRALVPFLQAEEDRRYLKAKKQLLEKEASIMKDVDGWE 119
BLAST of mRNA_P-littoralis_Contig174.78.2 vs. uniprot
Match: A0A5J4XG14_9CHLO (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XG14_9CHLO) HSP 1 Score: 78.6 bits (192), Expect = 7.850e-14 Identity = 44/107 (41.12%), Postives = 68/107 (63.55%), Query Frame = 1
Query: 25 PVVQDVAPKGGFPKIQISRQLPAGRGPRGSVVLGLVTLTMAVGYYKLGQANKGRRAEKHEKRMARIALMPMLQAEEDRKAVLTKRFNMQLQRALHESLDTWKEEEEL 345
PV+QD P GGFP ++ +R++P+ GP G + + MA G+ K+GQ N RRA K EK+ AR A+MP+LQAEEDR+ V ++ ++ L +++ +K E+L
Sbjct: 19 PVLQDGPPPGGFPSVRYARRIPS-TGPAGFTLFAVTASIMAYGFIKVGQTNHERRAAKAEKKAARFAIMPILQAEEDRRYVQANEAFIRKEKELMKNVPGYKAGEQL 124
BLAST of mRNA_P-littoralis_Contig174.78.2 vs. uniprot
Match: A0A087SFV8_AUXPR (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A087SFV8_AUXPR) HSP 1 Score: 76.6 bits (187), Expect = 3.690e-13 Identity = 47/113 (41.59%), Postives = 67/113 (59.29%), Query Frame = 1
Query: 25 PVVQDVAPKGGFPKIQISRQLPAGRGPRGSVVLGLVTLTMAVGYYKLGQANKGRRAEKHEKRMARIALMPMLQAEEDRKAVLTKRFNMQLQRALHESLDTWKEEEELN*QRGV 363
P+VQD P GGFP ++ +R+LP GP G + G+ MA G+Y++GQ N RR EK EK +R AL+P LQAEEDR+ V + Q+ + ++ +K EE + R V
Sbjct: 19 PIVQDGPPPGGFPAVRYARRLP-NSGPAGFTLFGVGAAVMAYGFYQVGQGNIKRRDEKREKLDSRRALVPFLQAEEDRRWVAANEEFQKKQKEIMKNHPEYKAEESVYKTRWV 130
BLAST of mRNA_P-littoralis_Contig174.78.2 vs. uniprot
Match: A0A2P6U3A2_CHLSO (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6U3A2_CHLSO) HSP 1 Score: 73.9 bits (180), Expect = 3.300e-12 Identity = 41/81 (50.62%), Postives = 55/81 (67.90%), Query Frame = 1
Query: 25 PVVQDVAPKGGFPKIQISRQLPAGRGPRGSVVLGLVTLTMAVGYYKLGQANKGRRAEKHEKRMARIALMPMLQAEEDRKAV 267
P+VQD P GGFP I+ +R++P+ GP G + + MA G+YK+GQ+N+ RR EK E AR AL+P LQAEEDR+ V
Sbjct: 19 PIVQDGPPPGGFPAIRYARRVPS-TGPSGFTLFAVGAAVMAYGFYKVGQSNRQRRGEKAEHFGARAALVPFLQAEEDRRWV 98
BLAST of mRNA_P-littoralis_Contig174.78.2 vs. uniprot
Match: A0A2P6VLY9_9CHLO (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 n=2 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VLY9_9CHLO) HSP 1 Score: 72.0 bits (175), Expect = 1.500e-11 Identity = 40/81 (49.38%), Postives = 53/81 (65.43%), Query Frame = 1
Query: 25 PVVQDVAPKGGFPKIQISRQLPAGRGPRGSVVLGLVTLTMAVGYYKLGQANKGRRAEKHEKRMARIALMPMLQAEEDRKAV 267
PVVQD P GGFP + +R++P+ GP G + MA G+YK+GQ+N+ RRA+K AR AL+P LQAEEDR+ V
Sbjct: 19 PVVQDGPPPGGFPSFRYARRVPS-TGPSGITLFAAGAAVMAFGFYKVGQSNRERRAQKAANLAARAALVPFLQAEEDRRWV 98
BLAST of mRNA_P-littoralis_Contig174.78.2 vs. uniprot
Match: A0A7S3CKE5_9SPIT (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 (Fragment) n=1 Tax=Strombidium rassoulzadegani TaxID=1082188 RepID=A0A7S3CKE5_9SPIT) HSP 1 Score: 72.0 bits (175), Expect = 1.650e-11 Identity = 38/84 (45.24%), Postives = 58/84 (69.05%), Query Frame = 1
Query: 28 VVQDVAPKGGFPKIQISRQLPAGRGPRGSVVLGLVTLTMAVGYYKLGQANKGRRAEKHEKRMARIALMPMLQAEEDRKAVLTKR 279
++QD P GGFP ++I+R++P GP G+ V G+ L ++ G+Y +GQ N +RA++ EK R AL+P+LQAEEDR+ V K+
Sbjct: 22 LLQDGPPAGGFPSVRIARRIP-NTGPSGAAVFGVGALVISYGFYIVGQTNIQKRADRAEKEAVRRALVPVLQAEEDRRFVAAKK 104
BLAST of mRNA_P-littoralis_Contig174.78.2 vs. uniprot
Match: A0A388KNK5_CHABU (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KNK5_CHABU) HSP 1 Score: 71.2 bits (173), Expect = 3.010e-11 Identity = 40/107 (37.38%), Postives = 65/107 (60.75%), Query Frame = 1
Query: 25 PVVQDVAPKGGFPKIQISRQLPAGRGPRGSVVLGLVTLTMAVGYYKLGQANKGRRAEKHEKRMARIALMPMLQAEEDRKAVLTKRFNMQLQRALHESLDTWKEEEEL 345
PV+QD P GGFP I+ +R++P GP G VV + ++ G Y++GQ N RRA K EK AR+A++P++QAEED + ++ + + + +++ WK E +
Sbjct: 19 PVLQDGPPPGGFPAIRYARKIP-NTGPSGVVVFSIAAAVISYGMYQVGQGNLHRRALKKEKMEARMAILPLIQAEEDVRYAKARQKALAEEEKIMQNVPGWKVGESV 124
BLAST of mRNA_P-littoralis_Contig174.78.2 vs. uniprot
Match: F0YB35_AURAN (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YB35_AURAN) HSP 1 Score: 68.9 bits (167), Expect = 1.820e-10 Identity = 40/83 (48.19%), Postives = 55/83 (66.27%), Query Frame = 1
Query: 28 VVQDVAPKGGFPKIQISRQLPAGRGPRGSVVLGLVTLTMAVGYYKLGQANKGRRAEKHEKRMARIALMPMLQAEEDRKAVLTK 276
VVQD+ P GG+P + I ++ RGP G ++ LT+A G+Y++GQ N R A K EKR AR+A++P LQAEED +AV K
Sbjct: 18 VVQDMPPAGGYPDV-IFKKATINRGPDGWMIWVGSLLTVAFGFYRVGQCNLERNAAKKEKREARMAIVPYLQAEEDARAVAAK 99
BLAST of mRNA_P-littoralis_Contig174.78.2 vs. uniprot
Match: A0A0D2WN18_CAPO3 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WN18_CAPO3) HSP 1 Score: 65.5 bits (158), Expect = 2.300e-9 Identity = 43/107 (40.19%), Postives = 64/107 (59.81%), Query Frame = 1
Query: 25 PVVQDVAPKGGFPKIQISRQLPAGRGPRGSVVLGLVTLTMAVGYYKLGQANKGRRAEKHEKRMARIALMPMLQAEEDRKAVLTKRFNMQLQRALHESLDTWKEEEEL 345
P QD+ P+GGF + R+ A RG G+ + + T+TM G + +GQ NK RR + E+ +AR L+PMLQAEEDR+ VL KR + L +++ WK E++
Sbjct: 5 PYKQDMPPQGGFADVPF-RKPKAVRGLSGAALFAIGTVTMFGGLFIVGQGNKTRRYWREEQVIARRNLVPMLQAEEDRRFVLAKRAAEAKEAELMKNVRGWKMHEKI 110
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 1 |
| Seed ortholog | 2880.D7FYS9 |
| Preferred name | NDUFA13 |
| PFAMs | GRIM-19 |
| Model size | 1265 |
| Max annot lvl | 2759|Eukaryota |
| KEGG ko | ko:K11353,ko:K14009 |
| KEGG TC | 3.D.1.6 |
| KEGG Pathway | ko00190,ko01100,ko04141,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,ko05165,map00190,map01100,map04141,map04714,map04723,map04932,map05010,map05012,map05016,map05165 |
| KEGG Module | M00146 |
| Hectar predicted targeting category | other localisation |
| GOs | GO:0000003,GO:0000166,GO:0001101,GO:0001558,GO:0003006,GO:0003674,GO:0003824,GO:0003954,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006355,GO:0006605,GO:0006626,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006839,GO:0006886,GO:0006915,GO:0006996,GO:0007005,GO:0007006,GO:0007007,GO:0007154,GO:0007165,GO:0007166,GO:0007275,GO:0008104,GO:0008137,GO:0008144,GO:0008150,GO:0008152,GO:0008219,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009790,GO:0009791,GO:0009793,GO:0009853,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010154,GO:0010257,GO:0010468,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010629,GO:0010646,GO:0010648,GO:0010941,GO:0010942,GO:0010950,GO:0010952,GO:0012501,GO:0015031,GO:0015833,GO:0015980,GO:0016020,GO:0016043,GO:0016310,GO:0016491,GO:0016651,GO:0016655,GO:0017038,GO:0017076,GO:0017144,GO:0019219,GO:0019222,GO:0019637,GO:0019693,GO:0019866,GO:0022414,GO:0022607,GO:0022900,GO:0022904,GO:0023051,GO:0023052,GO:0023057,GO:0030162,GO:0030308,GO:0030554,GO:0030964,GO:0031090,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032526,GO:0032553,GO:0032555,GO:0032559,GO:0032981,GO:0032991,GO:0033036,GO:0033108,GO:0033365,GO:0033993,GO:0034097,GO:0034613,GO:0034622,GO:0034641,GO:0035456,GO:0035458,GO:0035639,GO:0036094,GO:0040008,GO:0042176,GO:0042221,GO:0042773,GO:0042775,GO:0042886,GO:0042981,GO:0043065,GO:0043066,GO:0043067,GO:0043068,GO:0043069,GO:0043085,GO:0043094,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043280,GO:0043281,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044743,GO:0045039,GO:0045184,GO:0045271,GO:0045333,GO:0045732,GO:0045862,GO:0045892,GO:0045926,GO:0045934,GO:0046034,GO:0046483,GO:0046907,GO:0048316,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048608,GO:0048731,GO:0048856,GO:0050136,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051128,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051336,GO:0051345,GO:0051641,GO:0051649,GO:0051716,GO:0052547,GO:0052548,GO:0055085,GO:0055086,GO:0055114,GO:0060255,GO:0060548,GO:0061024,GO:0061458,GO:0065002,GO:0065003,GO:0065007,GO:0065009,GO:0070013,GO:0070469,GO:0070585,GO:0070727,GO:0070887,GO:0071229,GO:0071300,GO:0071310,GO:0071345,GO:0071396,GO:0071702,GO:0071704,GO:0071705,GO:0071806,GO:0071840,GO:0072521,GO:0072593,GO:0072594,GO:0072655,GO:0072657,GO:0080090,GO:0090150,GO:0090151,GO:0097159,GO:0097190,GO:0097191,GO:0097367,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901135,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901700,GO:1901701,GO:1902494,GO:1902531,GO:1902532,GO:1902679,GO:1903506,GO:1903507,GO:1990204,GO:1990542,GO:2000112,GO:2000113,GO:2000116,GO:2001056,GO:2001141,GO:2001233,GO:2001234,GO:2001242,GO:2001243 |
| Exons | 3 |
| Evalue | 9.11e-66 |
| EggNOG OGs | KOG3300@1|root,KOG3300@2759|Eukaryota |
| Ec32 ortholog description | GRIM-19 |
| Ec32 ortholog | Ec-19_002380.1 |
| Description | cellular response to interferon-beta |
| Cds size | 351 |
| COG category | J |
| BRITE | ko00000,ko00001,ko00002 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1680789839.0268853-UTR-P-littoralis_Contig174:287149..288063 | 1680789839.0268853-UTR-P-littoralis_Contig174:287149..288063 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig174 287150..288063 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1680789839.0380526-CDS-P-littoralis_Contig174:288063..288171 | 1680789839.0380526-CDS-P-littoralis_Contig174:288063..288171 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig174 288064..288171 - |
| 1680789839.0469925-CDS-P-littoralis_Contig174:291529..291706 | 1680789839.0469925-CDS-P-littoralis_Contig174:291529..291706 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig174 291530..291706 - |
| 1680789839.0560777-CDS-P-littoralis_Contig174:296922..296988 | 1680789839.0560777-CDS-P-littoralis_Contig174:296922..296988 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig174 296923..296988 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig174.78.2 >prot_P-littoralis_Contig174.78.2 ID=prot_P-littoralis_Contig174.78.2|Name=mRNA_P-littoralis_Contig174.78.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=117bp
MATPVGSGPVVQDVAPKGGFPKIQISRQLPAGRGPRGSVVLGLVTLTMAV
GYYKLGQANKGRRAEKHEKRMARIALMPMLQAEEDRKAVLTKRFNMQLQR
ALHESLDTWKEEEELN* back to topmRNA from alignment at P-littoralis_Contig174:287150..296988- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-littoralis_Contig174.78.2 ID=mRNA_P-littoralis_Contig174.78.2|Name=mRNA_P-littoralis_Contig174.78.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=9839bp|location=Sequence derived from alignment at P-littoralis_Contig174:287150..296988- (Pylaiella littoralis U1_48)
ATGGCGACGCCGGTAGGCTCTGGGCCAGTTGTCCAGGATGTTGCGCCAAA
GGGCGGATTCCCAAAGGTACGCGACTCATATAATCTTCTGTCCTATGACA
TGTGTGTGCGCAATTTGAGCACGTCTCTTTCGGGGTCATCTCTCTCTCGT
ACAACTACTGTAGAGTTAACCCAGGTACTCCGTAGGGCGTGTGTTTTGAA
CTCTTGTTTCGGATACACCTCTGACTGCTCTAGCACCGAAGTTCAAGTGG
GGATTGTGAGGCACATCAGTTGGTCAATCTGTTGCGGCGGTATCTGGAGG
GTTGGAGCTTCATCGTCCAGGTGTCCCGTGTTTCGGAACACGCACGCCCG
TAGTGTAATAGGCCGTACACCTTGTAGCCGTGTCTCATTGATCCATAAGA
GCCCGTATGAACGGAAGGCCAAAAAAAACGAAATAGCGAAAACGAAAACG
AAATTGGGCTCTGATTGGTCGGGAACAAAAAACGCAAGAGGCGTGTTTTC
GTTTCTACGTCCTCCGGGGAGGCGTTCCTTCGTTTTCGATTTCGCAAAAA
TAAAGTGTTTCGGACCTTTTTTTTTGCGAAAACGAAAATGAAATGCATGG
AGTTTGGTAACCTGGGAGGCTTGCCCATGAGCCTCCCAGGCAGCGAACTC
CTTCACACAGACTGCGACTGCGGTACACGGCGGTGCAACAGGCACCAACC
CGAACAGAGCGAGGCCCAATCCACACACTACAGCAGTGCAGCAGACAGCG
CCGAGCCGTCATACCCACTAGTCAGTGCAATAGACAGCACACGGCCGTCT
ACGATACCCACACGCTGACACGATGCATTCCACCGCGTTTTTTGAAATTG
GGCCCCGCGCGTTCTGGGTTTACATCATTTTTGGCGTTATCCCCTCTATT
CCGCTGCTCCAGCTCCTCGCAGCTGAAACGCGATAATACCCAAATGGAGT
TTTTTATTTTTTTTTCGAGAAGAACGAAGTTAATTCCTTTTTGTTTCAGC
TATTTCTTTTTTTTTGGCCTTCCGTTAATCCCCGCTCTAACTGCTGTGTA
AAGGTGTAACTTTAAAGTTACATACACATGATACACATATGATACTTCTG
TATCATATGATCTTCCGTATCATATCATATGAAGTAGATGCCGTGGCGGT
ACAGCAAACTGGGAGACCTACACAATTTTCTACAAAAGTTGTTTTAGGCT
GTTTTCTTGCCATCAACGTTATTTTGGTCTGGCGTTTTGAGGGTGGCCCT
TCTCAATTTTTTGACCGTATTCAAGATCAATAACATAATCGGATTTGGAC
TTTGGATTCCGTCTTGGGTCCGATCTGCTACAGCTTTTGTTTGTCCAAAA
TCAAAAGCGGAGGCATAAAAAAAACAGCAGTCACAGACAGATGGTGTGAT
TAAATGGTGTGATATGAGTGAGCATGCCTTGTCGATTCCGAGACAAGTGC
GGGAGCTGTCGCGCCTCAGAGCACGGTGGTGCCCCACGTCGCCCTGACTC
AGGCGCGTTGGTAGTTGTTTGTTTGGGATCGATAACCGAAAAACTCGGCA
GGAGATGAGTATGTACGTGTTGCACATCTGCTCTTTTTTGGAGGTAGCGG
CTGTGTCAGCTCCGCAAACAGCAGTTGAGCAACAAAGTTCCTGCACACTC
TACACACTTGAGTGCTGCTCTCCGGATTCTGGTCGGAATTCGCTCAAACA
AAGTGATCTGTATTCTGCGTGATACCAGCTTTCTCCGGAGCTAGCACATA
TGTACAGCCGGGGTCTACACGTTGTGCTATGGTCAGTTAAGCAAACATAT
GTAGTGTGCACCATGTGCTCCCGGAATGCACAGCAAACACCTCTCTGTCT
CGTATTCTAGGTCTATTCGTTTTTGAGCCGCGTTTTTGATCTATTCACGG
GAAGGACAGAAGGAAAGTGTTTTAGGGTGGCTCTTGTCAAAGCGTTTTGG
GCCCATTCAAAAAGCAAAAATCAAACTCAGAATGTCACTGATAGGTCAAC
AATCCATCCGCCCACACCACGTTTTGGATTTCAGTTTTATTCTTCCGAAA
CGGGAAGGAAAGTAAAAAGCACTTTCCTTCCCGCCATTAGATCAAAAACG
CGGCTCAAAAACAAATAGACCTAGAATACGAGACAGAGAGGTGTTTGCTG
TGCATTCCGGGAGCACATGGTGCACACTACATATGTTTGCTTAACTGACC
ATAGCACAACGTGTAGACCCCGGCTGTACATATGTGCTAGCTCCGGAGAA
AGCTGGTATCACGCAGAATACAGATCACTTTGTTTGAGCGAATTCCGACC
AGAATCCGGAGAGCAGCACTCAAGTGTGTAGAAGTGTGCAGGAACTTTGT
TGCTCAACTGCTGTTTGCGGAGCTGACACAGCCGCTACCTCCAAAAAAGA
GCAGATGTGCAACACGTACATACTCATCTCCTGCCGAGTTTTTCGGTTAT
CGATCCCAAACAAAGAACTACCAACGCGCCTGAGTCAGGGCGACGTGGGG
CACCATCGTGCTCTTCGTTTGAGGCACGACAGCTCCCGCACTTGTCTTGG
AATCGACACGGCATGCTCATATCACGCACATGTGTTGTCATCCCATATTC
TCTGGCACACTAGTCTGCACCCTGCGGTTCAAACTACAGGCTAGGCCCAT
CGACGGGGTCACACAGGAGGAAGGTCAACACAGGAGGAGTTACCCCCACC
TTCCTTCTGCGGTACATGCGTGAGATTTTTTCTCGCCAGCAGGGATCCGC
GGTCCCTACCCTCGTCGGCGAAGCCGAATCGGCTTTTACTAACAGCATAG
CCGCTTTCAAAGTCATCTGTCTGTGACTGCTGTTTGGCTGTTTTTTTTTT
TTATGCATCCGCTTTGGATTTTAGACAAACGAAAGCTGCAGCAGATCGAA
CCCAAGACAGAATCAAAATCAAAATCCAATTTGCTTTTGATTTTGAATGC
GGTAAAAAAAGTGACAAGAGCTACCCTTGCTTTCCTTCCCGTTTCGAAAA
AATAAAACTGAAATCCAAAACGTGGTGCGGGCGGATGGATTGTTGACCTA
TCAGTGACGCATCCTGGGTGTGAGTTTTGCTCTTTGATTTTTGAATGGGC
CCAAAACCCAAAACGTTTTGACAAGGGCCACCCTGACCCCCCTTTGTTCA
AATCGAACCAGAGAACCCCCCTACCCCCGCCACCCACAAACAGCCCTCTG
GTGGACACATCATACGACAGCACCAACCAAAACTCGACCCCTGGGACACA
GGTGCCGATCAAACCTGATGGAGCGTGTGCTCCTATGTTCTCAAGTTGGC
CACAGGAAGTTCGGTGGCAGTGGGTTCGGGCTGTGGCGAGATTTTGGCGG
CGGTGTGTTGGAGTCGGAAAAACAGATGAAGCGAAATAACAGACTTCGCT
CCTGTTTTTCCGGCCAAAAAATAGGCTCGGACGGCGTTTTTTTCCCGGAT
TTCCTACCTCAACCCACTCCGCCGCCGAAACCTCGCTAAAGCCCACACGC
ACCAAATTTCCCGTCGCCAACATAAGAACACTGGAGCGTACCCTCCCACA
GTTTTAATTTCGATTGGTGGTCGAGTTCTGCCTGGTGCTTTCTCCTGTCG
TGCTCAAGAAGTAACTTTTCAAACAGTTTGGGCTCTCTGTTATTGTGGAG
GGGGTACCTCCGGAGAAAAAACACAGCACCAAATAACAGAGCCGTAAGAA
ACGGTCCGCATGTAATGGCATGGCACTTTTTTTTTTTTACAGCGACCAAA
GTTTGTCGGTGTTATACAACAATGCAACCGACACATCCTCGGAGCTCCTC
CTGAATTTGCCTCAATTTGAGCTGCCAGTACCATTCGGGGTCGTGACCTT
TGTCACCGCTGTTGCTCCTTGCACAGACCGCGGCTGGATACGAAATCAAC
AGGACACCTCAGAAGGGCCTCATTCTACCTTTCCCTGTAGTTCATATGCC
ATGTTTTTTCTTCAAACTGTAGAAATGCTGCGCCACCGTAACTGAAAGCA
AGTTCTTAAAAAAAAAAAGTTGCCTCCAGGGAGCTCGTTTTTTGGCCTCG
GGAGGCAAACTTCACGCCAGGATTACCAAACGGTGAATTGACCAAATCGC
CTGAAATTTGGAGGGTGTGTAGCTTGGTGGACACACTACCCAAAAAGCGT
TGGCGAAATTGGGGACCAAACACTACGGCGCTCGCGACGGGCCTGTAAAA
GTTACTTGAAACCGACCGAGACCAGTCTAAACTCCAGTAGTCATCAGGTT
GAAATTTTTGACCTCAACAACGATCAGGTGTCTACCTCCGAAAATATCCC
CAAAATATCAATATTGTATTGCAAAAAAAACTTTAGATAAAAGTTGCTCA
CTGGGGAATCGACCAAACGGGCTGCAACTCGGAGAGTGTAGCTTTGTGGA
TGAAGTACGCAAAAATGTTGACGAATTCAGGGATCATAGCTACAGCCGAT
GAACCAGTAGGTGAAATGGCATATGTCCCAAGAAAATCAGGTTGGCGGGT
CCCGTGCAACGACAACTTTTGTTCACATAGAAAAACGCGTTTTTTTCTAC
TGTATAGGGACCATTATATGTGGACTTTGCTCCTGTTTTTCCGCCCAAAA
ACCAGGCTCGGACAGCGTTTTTTTTCACCGGATTTCCTGCCTCAACCCAC
ACCCACCCCGCCGCCGATACGTCGTCACAGCCAAAGCCCACACCCACCAA
ATTTTCTGTGACCAACATGAGAACACTGGGCCGTACCCTCCGAACAGTTT
TAGTCTCGATTGGTGTCCCAGGGGTCGAGTTTGCTCGGTGCTGTCTCCTG
TTGTGCTCAAGAAGGAGATTTGTCAACCGTTTGGGCTCCCTGTTATTGGG
GGGGGAACGGGGTACCCCAGGAAAAAAAACACAAGACCAAATAACAGAGC
CGTAAGAAACGGTCTAAGAAACGGTCTTACAGAAAAATGTACGCCAACAG
CAGCAAATACTTACTGCTGTACGTGTATACCTGCATGATACGATGGGTTG
GGTTTTCAACCTTTTGCACACTCTGATCTCTACAGCAGTATCGAACATAA
CAATTCTATGTTATGATCGATGTTCAACGCTCGCAACGATACTGTACAAC
ACAACATACGTGGTGCCGATCCCAAACGATTTATTTCCGGAAATCTTTTG
AAAATATTTTTCCATTGCCATCGCTTTTCGGCACGGAAATTTTCCCACCG
TGAAGACGTGGAGAATGGAAAATCGACAAATGTGGAACACCCCGCGCTTT
TGCGTTCTTTACCTCCTTGCTTCTTCTTTCAGATCCAAATATCCCGGCAA
TTACCGGCGGGCCGAGGACCGCGCGGGTCGGTCGTTCTCGGTCTCGTAAC
GCTCACGATGGCCGTTGGATACTACAAGCTGGGACAGGCGAATAAGGGAC
GGCGAGCAGAGAAGCACGAGAAGCGCATGGCTCGAATCGCGTTGATGCCC
ATGCTTCAGGTGGGGAGAGTGCGAGATGTAAACGTGTGGAACCACGTACA
GGTACCGCGAACGCCATGGGCAGCCATGCCCACATGAGAAAGTACAGCCC
CCACAGAATACCACGCCCGTTGGTAATATTTTCAGACCAAAAACGCGAGG
CCAAAATATCACGCGGGTTATATGAGACACCACACCCCCCTGAGGTTGCG
CCGCATACCGGTAAACCACACGGGACCCATGCCTCTGTCACCCCGGCGAT
CATCACCCGCAGAAAACCACACCCGGTGGTAATATTTTCAGACCAAAAAC
GAGAGGCCGAAAGATCACGCGGGTTACATGAGATACCACCCCCCTTGCGG
TTGCGCCGCATACCGGTAAACCATGGGGTCCATGGCCCCTGCCTCTGTCA
CCCCGGTGATTAACGATGGAGGAGATCACATACATTAGACAACACATATG
AATAGCACATTATCCCAAAGTGCGGGAAAGCGCATCGTATGGCGAGCACC
GACAACTTGAAAGATTAGGGGGCAAAGTTCCCCGCTGCAGGCACGTCACT
TGCAAGCACCTCCGCTACTTGGACGGCAGAAGTGCAGGCTCGACATATCA
CGTCTTTCTTTCACACCGAGCAAATTTTCCACACCCTGTACAACTACTTT
TGGTAGTTGCCTGCCAAACAACTATCGGTTGAGAAAGCTATGCAACTATT
TGTCTGCAAACAACGATTGTTTGAGAAAGATACAACTATTTGTCTGTAGA
CAACTGTTGGTTTAGAAAGCTATGCAACTATTTGCTACCAGACAGTTATC
GAAAAAAAAAGCTAATCAACTATTTGCTGCCAGACAACTGTCGAAAAAAA
AAGCTATGCCACTAATTTGCTGCCAGACAACTATCGAAAAAAAAAGCTAT
GCAACTATTTGCTGCCAGACACCTATCGAAAAATAAAGCTATGCAACTAT
TTGTCTGCGGACAACTACCGAAAATAAAAGCTGTGCAACTATTGTCTGTG
GACAACTATTGGGTACTTTCGGCCGTACACAACTATTAGTCGGAGATGTT
TAGTTGTGCGAGAACTTGTTCAGGGTGTTTTTTTTCGCCTCTCCCTATCA
AACTCCTTCGCGCCAATTTTTTATTTTTTATCAATTGCATATACAAGTAG
CATACAGATGTCGCTGCCGCGAAATAATGTAAGGTGTATACTGCATATTC
CCCTCTAGGATGATGCTAAGATATTAAACCTTACCTTTCCTAAGGTACTG
CTGTACGGCTGTCGTCTTGTACACCGATCGAATCCTTAAATTACCCTCAA
CGTAATCCTAACCCCAAACCCGCACAAACCAGCAAGCTAGGTGCTGGTTG
GAAACGTGCTAGGTTATAGATTGTTTGTGGTGGTATTGTTGAAGGGATCC
CCAGGTTGGTGCTGCTTGGAGAATTGGCTACACCTGCTAGGTTGGTCGTA
TGCTGTCAGCTCTACTACGTTCCATGTTGTCGACAGTACGAATAAGGTAC
GCCCCGTGCCTCTTCATGGCGCGTGGCTGTGTAGCGCCCACAACTACGTT
TGGAATTGCTGGAGCTCTGTGCAACCATCATTTGACCGCGAGACAACTAC
TCGTACTACAGTAGTTACGGAGTACGGCTGAGCTAAACTTATTAGTTGTC
TGTGGACAACTTTTGGTTGAGAAAGCTATGTAACTGTTTGCTGCGAGACA
ACTATATAAAAAAAAGCTATGCAACTATTTGCTGCCAGACAACTATCGAA
AAAAAAAGCTGCGCAACTATTTGCTGCCAGACAACTGTCGAAAAAAAAGC
TGTGCAACTATTTGCTCCCAGGCAACTAACGAAAAAAAAAACTGTGCAAC
TATTTGTCTGTGGACAATTATCGGTAAAAAAAGCTAGGCAATTATTTGCT
GCCAGACAACTATGGAAAAAAAATGCTGTGCAACTATTTGTCTGCGGACA
ACGTAGGGGTAGTTTCGGCCGTGCACGACTATTTAGTTGTATTTGTTAGT
TGTTAGTTGTAGTTGCACAGGGCTTGGCATTTTCTCGACACCTGCGGCCC
CTCTTGCCCCTGATGCAGGGACTGACACAGCATGCTAATGTGGCAGCCAC
TGCACCGGCTCAGCAATATTCTTTGCAGGCAGTGTTATCGTCACCGTTAT
CATCACCCCCCTCCTTATTTACACCCCTTGTTATCGCATACCCTGATGGC
TACTGGGACCTGTAAATCATGGCCGTCGTTGCACGACAAACCACACCCCC
ACAGAGAACCGCATTTTTAACGCCACAATCCTGCTTTTCATCGGGGTGGG
GTTTCTAATGTCGTTCACGGTAGGGAGGTGAGAGAACGAGGATAGCTCAG
GCATTCCAGCGTTTCACGTAGAGCAAAAGTCCTTGCTGCCCTTTGCACCA
GAGACCAGATTGTATTTATTTAATGTCAGTGTCCGTTGCTTCTTTGCTTC
CTCAGCCAAAGAGGTTTGACGGTCACTGCAAGAGGCACCTCTACCTCCAT
ATCATATTTAAAATATGATATGGAGGTAGAGATGCCTCTTGCAGTGACCG
TCATATGTCGATAACGCGAAATGGGACTCTTTTCTAGCGTCCTCTTCGTC
TCGGGAGCGTTTGTAAGCATGAAAGGTTTGAAGCCGAGAATTTCAAGCCC
GAACTTGCTATTTTTTGGAAGAACAGATTGAAGTCAACGTGCACTGAGAA
TGAACGTATTGCATAAGTGGGGAATCGAACAACAAATGCTCCGGAGGAGT
GCATTTCTGCGCGCCCCTAAGCGAACGGGCAATATAGTTTCTAGTGTATC
CAAGATGATACCCGGATGGGGCAGTTCGTTTGCCGGGTCAAATGCAACCA
CGAGGCGGTGGTGTGTAGCGCATGTGCCGCTTTCACCGTTCTGCGGTGGC
AGCTCATGCTCCAACTCTAAGGTTGTTTATACAGACTGCACCGGTGTTGG
ATGCCGCTAATTTTCATTCCATCGATATCATGTTTAGCCCCGTCCGCTCA
TGTCGATAGTGCCAGCCTTTAATTTATCATTTCTTGATCGTAATTTTTAG
TTTTGTTTTAAACGGTGTGGCCAAGGACTTGGCTGTAGGTTCGCATCGAG
TTCTGCTAAGTACCGCTGGCGCCGAGCACATGCACGTTGTGCATGCACAA
CTCTCTACCCCCTCCAGTAATGGCACTAAATACATGATTTTCCTTTTTTT
TTTACACAGGACTATTTCTCGTTTTTTATGTTAGTCCCATTTCTGTATGT
ACGTGGAATCCCTCTGTATATGACGATTCTATGATATGTATACATCAGTT
CCTAACGTCGAACCCTGTCTCTTTCGCCCGGGGACTGCTGTTCGCTACCG
CCTCTTTTTTCAATCAGGCGGAAGAAGACAGGAAGGCCGTACTGACCAAG
CGCTTTAACATGCAGCTTCAAAGAGCCCTTCACGAGTCTCTCGACACTTG
GAAGGAGGAGGAGGAGTTGAACTAGCAACGTGGAGTGTTTGGCTAGTCGG
TAGAACTTTGCCTGAGCATGTGGTTTCGTTTTTGACGATTGTGCGGACTG
GGTCGGCCTTTCGTGCGATACCGAAGATGGGGCGGGCTGAAGGGTCCATT
TGAGAGCATCAGGGGCGGAGATTTTACGGGGGGGGAGGGGGATGGCAGGA
ACGAGATATGCCGGAGGCACTTGTTGTGGAAAAGCGTAAGAAGTGCACAA
AGAAAAAAGCTCCACAGAGCACTACTGTTGTGCGTGGGTATGTGTGTGCG
TGTTTTAATCCCATTTATTCTTGGCACCGCTCTACACCTTTCGGTGTGGA
GTGGGTGCACGAGCCGGGGCCACAGTGTGTAGGGAGATTAGCACCTCATG
CAAAGGAGGCTGGTGGGCGGGTCTACAAGCTTCCTGGCGTACGTGAGGCA
CTGTGTAGTTAATGGGTTTTCTACATGAGTTTGGGTGTGACGTTGACTAT
AAGTTGCATTGTTTGCGCAGCTCATGCCGAGAGTTGCGAAAACAAAATCA
CGGCGTTTTATGGATGACATCCCGGTCGACTTTAATCGACCCATCGAGGG
CGAACTGCGCATCTGGCCATGATATCATGCGATCATAAAACGGAAATTAG
CCGTCGGCTCTCAAACGCCTGTCTGGTATTCATGTTGTGTGGTTCTTGCG
AGTGAGTGTAGCACCGTCTCGTGTCTTTTGGCTGTCGGCCCTTTTCGCTG
CACCCGAGAAATCCGAAAGCTCGTGTCCCGCCGCCCCTCCCCCCGTCTTC
GCCACGATACCTACTGCCGACCTAGCTTCCTCTTCTGAGAGATACGCACG
AAAAGCCTTCATCAGAACGCGGGATTCAGAGTCCATTCGAGCACGGACCT
GCAGTGACGATAAAAGAATTAAGATTTGCGTGAAAAGCG back to topCoding sequence (CDS) from alignment at P-littoralis_Contig174:287150..296988- >mRNA_P-littoralis_Contig174.78.2 ID=mRNA_P-littoralis_Contig174.78.2|Name=mRNA_P-littoralis_Contig174.78.2|organism=Pylaiella littoralis U1_48|type=CDS|length=351bp|location=Sequence derived from alignment at P-littoralis_Contig174:287150..296988- (Pylaiella littoralis U1_48)
ATGGCGACGCCGGTAGGCTCTGGGCCAGTTGTCCAGGATGTTGCGCCAAA
GGGCGGATTCCCAAAGATCCAAATATCCCGGCAATTACCGGCGGGCCGAG
GACCGCGCGGGTCGGTCGTTCTCGGTCTCGTAACGCTCACGATGGCCGTT
GGATACTACAAGCTGGGACAGGCGAATAAGGGACGGCGAGCAGAGAAGCA
CGAGAAGCGCATGGCTCGAATCGCGTTGATGCCCATGCTTCAGGCGGAAG
AAGACAGGAAGGCCGTACTGACCAAGCGCTTTAACATGCAGCTTCAAAGA
GCCCTTCACGAGTCTCTCGACACTTGGAAGGAGGAGGAGGAGTTGAACTA
G back to top
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