mRNA_P-littoralis_Contig174.76.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig174.76.1
Unique NamemRNA_P-littoralis_Contig174.76.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig174.76.1 vs. uniprot
Match: A0A6H5LB71_9PHAE (PC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LB71_9PHAE)

HSP 1 Score: 191 bits (486), Expect = 2.450e-52
Identity = 127/240 (52.92%), Postives = 158/240 (65.83%), Query Frame = 3 
Query:   99 MQRLGLSAKYYGY-RYLTHSLAGSSRRLSSFS-GPDHDSDVFYAAKTEARTTPAYQQATAPAIAATA-PSTNGGDQWSTPGGYGPGRMPMGQAYGPPSGGSXXXXXXDGNNSGPHTHDAANTANPY--EYVQPQPTFDMQSSTHLSPIKRVDVRSYKGRVLVDIRQFFRGPDGTTMPSKKGIALTIPQWRRLQEAMGDIDSKLRGMEEA--TTEEMNAH---------ERGEQGPGGRAP 770
            MQR G+SA+  G+   L HS   SSR+LSSFS GP+HD D + AAKTEA+ TPAYQQA A A A T    T  GD+W+ PGG  PG MPMG+AY P S          G  S      ++NT N    ++V P PTFDMQSSTHLSP+++VDVRS+KGR LVDIRQ+FRG +G  +P+KKGIALTIPQWRRLQEAM DID ++  +EE   +   ++AH         E G++GP  +AP
Sbjct:    1 MQRFGVSARRRGFPSLLIHS--SSSRKLSSFSSGPEHD-DFWTAAKTEAQATPAYQQAAANATAPTPWTPTATGDRWAQPGGPSPGTMPMGEAYKPSSSSKMY-----GGRSSSSNGRSSNTFNSDSGDFVPPPPTFDMQSSTHLSPVRQVDVRSFKGRPLVDIRQYFRGAEGQAVPTKKGIALTIPQWRRLQEAMADIDKEIFALEEQQRSLAAVDAHLLELAEQPFEVGDEGPDKQAP 232
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BLAST of mRNA_P-littoralis_Contig174.76.1 vs. uniprot
Match: D7FYS7_ECTSI (PC4 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYS7_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 3.950e-23
Identity = 48/70 (68.57%), Postives = 58/70 (82.86%), Query Frame = 3 
Query:  498 MQSSTHLSPIKRVDVRSYKGRVLVDIRQFFRGPDGTTMPSKKGIALTIPQWRRLQEAMGDIDSKLRGMEE 707
            MQSS HLSP+++ DVR +KGR LVDIRQ+FRG +G   P+KKGIALTIPQWRRLQEAM DID ++  +EE
Sbjct:    1 MQSSMHLSPVRQADVRLFKGRPLVDIRQYFRGAEGQAAPTKKGIALTIPQWRRLQEAMADIDKEIFALEE 70
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BLAST of mRNA_P-littoralis_Contig174.76.1 vs. uniprot
Match: A8D8C5_ARTSF (RNA polymerase II transcriptional coactivator n=1 Tax=Artemia franciscana TaxID=6661 RepID=A8D8C5_ARTSF)

HSP 1 Score: 67.8 bits (164), Expect = 4.340e-10
Identity = 28/69 (40.58%), Postives = 46/69 (66.67%), Query Frame = 3 
Query:  495 DMQSSTHLSPIKRVDVRSYKGRVLVDIRQFFRGPDGTTMPSKKGIALTIPQWRRLQEAMGDIDSKLRGM 701
            D + +  L   + + VRS+KG+  VDIR+++    G  MP KKGI+L++ QW+++QEAM ++D  L+ M
Sbjct:   40 DEEPTWTLDKKRFLKVRSFKGKTFVDIREYYEDASGNLMPGKKGISLSVQQWKKVQEAMDEVDEALKNM 108
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BLAST of mRNA_P-littoralis_Contig174.76.1 vs. uniprot
Match: A0A1X7U2Q5_AMPQE (PC4 domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7U2Q5_AMPQE)

HSP 1 Score: 67.8 bits (164), Expect = 4.830e-10
Identity = 28/66 (42.42%), Postives = 46/66 (69.70%), Query Frame = 3 
Query:  495 DMQSSTHLSPIKRVDVRSYKGRVLVDIRQFFRGPDGTTMPSKKGIALTIPQWRRLQEAMGDIDSKL 692
            D +    LS  + V+VR++KGR+++DIR+++   DG   P KKGI+L++ QW +L+EAM  ID ++
Sbjct:   44 DTEELIPLSAKRFVNVRTFKGRIMIDIREYYVNDDGENRPGKKGISLSVDQWEKLKEAMETIDERI 109
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BLAST of mRNA_P-littoralis_Contig174.76.1 vs. uniprot
Match: A0A7M7J9K9_VARDE (PC4 domain-containing protein n=1 Tax=Varroa destructor TaxID=109461 RepID=A0A7M7J9K9_VARDE)

HSP 1 Score: 66.6 bits (161), Expect = 8.670e-10
Identity = 28/67 (41.79%), Postives = 46/67 (68.66%), Query Frame = 3 
Query:  495 DMQSSTHLSPIKRVDVRSYKGRVLVDIRQFFRGPDGTTMPSKKGIALTIPQWRRLQEAMGDIDSKLR 695
            D + +  LS +++V V  +KG++ V+IR+++   +G T P KKGIAL+I QW +L+E M DID  ++
Sbjct:   30 DAEDTFELSKMRQVSVSDFKGKLFVNIREYYEDSNGETRPGKKGIALSIDQWEKLKEHMVDIDKAIK 96
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BLAST of mRNA_P-littoralis_Contig174.76.1 vs. uniprot
Match: W5JGS1_ANODA (p31A n=6 Tax=Nyssorhynchus TaxID=44543 RepID=W5JGS1_ANODA)

HSP 1 Score: 66.6 bits (161), Expect = 1.020e-9
Identity = 34/91 (37.36%), Postives = 53/91 (58.24%), Query Frame = 3 
Query:  423 SGPHTHDAANTANPYEYVQPQPTFDMQSSTHLSPIKRVDVRSYKGRVLVDIRQFFRGPDGTTMPSKKGIALTIPQWRRLQEAMGDIDSKLR 695
            SGP   +    A P E      + D      L   +++ VR +KG+V VDIR+F+   DG  MP KKGI+L++PQW++L E+  +++ KL+
Sbjct:   15 SGPEDRNPVKKAKPSEGGNKSDSTD-DGCIQLDKNRKITVRDFKGKVYVDIREFYE-KDGKQMPGKKGISLSVPQWKKLLESADEVNEKLK 103
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BLAST of mRNA_P-littoralis_Contig174.76.1 vs. uniprot
Match: A0A8C4ZD74_GADMO (Activated RNA polymerase II transcriptional coactivator p15 n=2 Tax=Gadus morhua TaxID=8049 RepID=A0A8C4ZD74_GADMO)

HSP 1 Score: 67.0 bits (162), Expect = 1.330e-9
Identity = 28/67 (41.79%), Postives = 44/67 (65.67%), Query Frame = 3 
Query:  495 DMQSSTHLSPIKRVDVRSYKGRVLVDIRQFFRGPDGTTMPSKKGIALTIPQWRRLQEAMGDIDSKLR 695
            D+ S + +  ++ V VR +KG+ LVDIR+++  PDG   P KKGI+L   QW +L+E + DID  ++
Sbjct:   59 DLLSVSQIGKMRYVSVRDFKGKTLVDIREYWMNPDGEMKPGKKGISLNAEQWSQLKEQISDIDEAVK 125
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BLAST of mRNA_P-littoralis_Contig174.76.1 vs. uniprot
Match: UPI001ED87873 (activated RNA polymerase II transcriptional coactivator p15 n=1 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED87873)

HSP 1 Score: 65.9 bits (159), Expect = 2.110e-9
Identity = 29/65 (44.62%), Postives = 46/65 (70.77%), Query Frame = 3 
Query:  507 STHLSPIKRVDVRSYKGRVLVDIRQFFRGPDGTTMPSKKGIALTIPQWRRLQEAMGDIDSKLRGM 701
            S HL  +K   VR+++G+V VDIR++++  DG   P KKGI+L++ QWRR++E M +ID  ++ M
Sbjct:   46 SWHLEKMKYAKVRTFQGKVYVDIREYYQS-DGKMKPGKKGISLSVDQWRRIKELMPEIDEAIKEM 109
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BLAST of mRNA_P-littoralis_Contig174.76.1 vs. uniprot
Match: A0A4S8MPS4_DENBC (Transcriptional coactivator p15 (Fragment) n=1 Tax=Dendrothele bispora (strain CBS 962.96) TaxID=1314807 RepID=A0A4S8MPS4_DENBC)

HSP 1 Score: 64.7 bits (156), Expect = 2.590e-9
Identity = 32/66 (48.48%), Postives = 42/66 (63.64%), Query Frame = 3 
Query:  495 DMQSSTHLSPIKRVDVRSYKGRVLVDIRQFFRGPDGTTMPSKKGIALTIPQWRRLQEAMGDIDSKL 692
            D +    L   KR  VRS+KG +LVDIR+F+ G DG   P KKGI+LT+ QW  L+++M  ID  L
Sbjct:   15 DGEKYIDLGKKKRATVRSFKGNMLVDIREFY-GDDGNEKPGKKGISLTMEQWETLKDSMSTIDDLL 79
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BLAST of mRNA_P-littoralis_Contig174.76.1 vs. uniprot
Match: A0A8C6TGR0_9GOBI (Activated RNA polymerase II transcriptional coactivator p15 n=1 Tax=Neogobius melanostomus TaxID=47308 RepID=A0A8C6TGR0_9GOBI)

HSP 1 Score: 65.9 bits (159), Expect = 3.200e-9
Identity = 27/60 (45.00%), Postives = 41/60 (68.33%), Query Frame = 3 
Query:  516 LSPIKRVDVRSYKGRVLVDIRQFFRGPDGTTMPSKKGIALTIPQWRRLQEAMGDIDSKLR 695
            +  ++ V VR +KG++LVDIR+++  PDG   P KKGI+L   QW +L+E + DID  +R
Sbjct:   64 IGKMRYVSVREFKGKILVDIREYWTNPDGEMKPGKKGISLNPEQWNQLKEQISDIDDAIR 123
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig174.76.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LB71_9PHAE2.450e-5252.92PC4 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FYS7_ECTSI3.950e-2368.57PC4 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A8D8C5_ARTSF4.340e-1040.58RNA polymerase II transcriptional coactivator n=1 ... [more]
A0A1X7U2Q5_AMPQE4.830e-1042.42PC4 domain-containing protein n=1 Tax=Amphimedon q... [more]
A0A7M7J9K9_VARDE8.670e-1041.79PC4 domain-containing protein n=1 Tax=Varroa destr... [more]
W5JGS1_ANODA1.020e-937.36p31A n=6 Tax=Nyssorhynchus TaxID=44543 RepID=W5JGS... [more]
A0A8C4ZD74_GADMO1.330e-941.79Activated RNA polymerase II transcriptional coacti... [more]
UPI001ED878732.110e-944.62activated RNA polymerase II transcriptional coacti... [more]
A0A4S8MPS4_DENBC2.590e-948.48Transcriptional coactivator p15 (Fragment) n=1 Tax... [more]
A0A8C6TGR0_9GOBI3.200e-945.00Activated RNA polymerase II transcriptional coacti... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig174contigP-littoralis_Contig174:280152..282538 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog588596.U9UGC4
PFAMsPC4
Model size2387
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003712,GO:0003713,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005667,GO:0006355,GO:0006357,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0019219,GO:0019222,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031334,GO:0032991,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043254,GO:0044087,GO:0044089,GO:0044424,GO:0044464,GO:0045893,GO:0045935,GO:0045944,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0060260,GO:0060261,GO:0065007,GO:0080090,GO:0140110,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2000142,GO:2000144,GO:2001141
Exons1
Evalue2.54e-12
EggNOG OGsKOG2712@1|root,KOG2712@2759|Eukaryota,3A88C@33154|Opisthokonta,3P6X1@4751|Fungi
Ec32 ortholog descriptionssDNA-binding transcriptional regulator
Ec32 orthologEc-19_002360.1
DescriptionRNA polymerase II transcriptional coactivator
Cds size675
COG categoryK
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789838.821758-UTR-P-littoralis_Contig174:280151..2817651680789838.821758-UTR-P-littoralis_Contig174:280151..281765Pylaiella littoralis U1_48UTRP-littoralis_Contig174 280152..281765 -
1680789838.850635-UTR-P-littoralis_Contig174:282440..2825381680789838.850635-UTR-P-littoralis_Contig174:282440..282538Pylaiella littoralis U1_48UTRP-littoralis_Contig174 282441..282538 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789838.8379843-CDS-P-littoralis_Contig174:281765..2824401680789838.8379843-CDS-P-littoralis_Contig174:281765..282440Pylaiella littoralis U1_48CDSP-littoralis_Contig174 281766..282440 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig174.76.1prot_P-littoralis_Contig174.76.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig174 281766..282440 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig174.76.1

>prot_P-littoralis_Contig174.76.1 ID=prot_P-littoralis_Contig174.76.1|Name=mRNA_P-littoralis_Contig174.76.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=225bp
MQRLGLSAKYYGYRYLTHSLAGSSRRLSSFSGPDHDSDVFYAAKTEARTT
PAYQQATAPAIAATAPSTNGGDQWSTPGGYGPGRMPMGQAYGPPSGGSSN
SSSSDGNNSGPHTHDAANTANPYEYVQPQPTFDMQSSTHLSPIKRVDVRS
YKGRVLVDIRQFFRGPDGTTMPSKKGIALTIPQWRRLQEAMGDIDSKLRG
MEEATTEEMNAHERGEQGPGGRAP*
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mRNA from alignment at P-littoralis_Contig174:280152..282538-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig174.76.1 ID=mRNA_P-littoralis_Contig174.76.1|Name=mRNA_P-littoralis_Contig174.76.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2387bp|location=Sequence derived from alignment at P-littoralis_Contig174:280152..282538- (Pylaiella littoralis U1_48)
CAGCAGAACCCGTTGAACGAGACAACAAGCACAGCTGCCGACACGGCCAA
CCACAGCGCACGTCGAGCGACTCTAAGAATAAAGGTAGGAGGAGCAAGAT
GCAGAGGCTCGGGTTATCAGCGAAATACTACGGCTACCGGTACCTCACAC
ACAGCTTAGCAGGATCATCTCGACGACTGTCAAGCTTCTCCGGCCCGGAC
CACGACAGCGACGTCTTTTACGCAGCGAAGACAGAGGCACGAACAACCCC
CGCTTACCAACAAGCTACTGCTCCTGCCATTGCAGCAACCGCGCCTTCCA
CGAATGGTGGGGACCAGTGGTCGACGCCTGGAGGCTACGGTCCAGGACGG
ATGCCTATGGGCCAGGCATACGGCCCCCCATCGGGCGGCAGCAGCAACAG
CAGCAGCAGCGACGGAAACAACAGCGGTCCCCACACCCACGACGCAGCGA
ACACAGCAAACCCTTACGAGTACGTTCAGCCACAACCAACCTTCGACATG
CAGAGCTCGACGCACCTGTCTCCCATAAAGCGGGTAGATGTACGGTCGTA
CAAGGGCAGGGTTTTGGTGGATATTCGACAATTTTTCAGGGGTCCCGACG
GTACCACGATGCCATCGAAGAAAGGCATAGCCCTGACCATACCTCAATGG
AGACGACTCCAGGAGGCGATGGGCGACATTGACAGCAAGTTACGAGGGAT
GGAAGAGGCCACTACTGAAGAAATGAACGCTCACGAGCGTGGAGAGCAGG
GTCCTGGTGGGCGGGCACCATAGCGTAGGAGGAGGACCGGAGCACGGCAG
AGAGAAGATTTGTCTACACGGGGTTAGATGTACCTGTATGGCGGGTGTAC
GCTTTGTCCCCCCTCAAGTGTCGCTCTGCTGGTGTAGCGCTGAACGCTTG
GAGGTCAGGGTGAGATTCTGCTGTCTAGAGACTCCGCGACCTTGAGAGCT
CCGGGTGATTATTTAGCTGGATCGTATGATATATTTGAACCCGTTATACT
GCCGTAGCGATCGCTTGCGCTGTCCTGGTATTAGAGGCGTTGATACCTTT
TCGTAAGAGCAGTGTATGCCGAGGTGTTAAAATGACTGCACATGACCGCC
GTGGTGCAGCTTCCCGCATTGCAAGAGATTCGGTGTCAAGCCGTGTCTGC
ACACCCACAGAGTTTGTTTGAGTTTGGCGCGGGAATGTGCTCTGATGATG
ACACTTTATAAGGTATCATTTTGTTTTTCTTTAATATAGGAACCTCGAAG
TAGTCATTTTATGCTGTTCATCGTTTGTTTTTCAACGGCCGCGTTACTCC
GTCGCAACGATTTTGACGAGATGCCAACCCAAGAATTTTTTAGTAGTTTC
AAACTTTAATGGTGTGCGCCGCGGGAGGATGGATCCCCAGCAGGTTCGAT
TTTGCATGAATTATCGCCTGTTGATTTGCCCCCCCCTCTCTTCCCTCACG
AACGCTTGTGGCACAATTTTCGCTTGAGGGGCAGGTTGGGGTCGTAGCAG
CTGCGCCTTTGGATACAAAAATCTGCACGTCAATCATGACTCGTGCCTAG
AGGACGTTTTAGTCTGTGACGAGTGTTGGAGCACCATTTTCACTCGTGTT
CCATGTGGAATATTACTAGCTATCCCGCGCGCAATGTGTAGAGCGAACAG
ACACTCCTCAACCCATAACAAACCGTTCAGACGCAAAAAACTACGTGTCT
CCCCCCCAAGTCCACGCCTAGACCCTCTCGTTCTCAACATTTCACACCGT
GGACAATGTACACGACAGTAGTCCATTGCTTCGATATAGACGTGGGGGGG
AATCTATCGATGCCCATTGCAGAATACCATCGATGATGGAACGGATATCT
CGATATAGTTATGTTTCAAGAAACAAAAGATTTGGAAAACCTCCATCAAT
AGTCTTCTGCAGTACCTGGTTCAAAATATCGAGATAAGTGGCCATCGATA
TGCATTTTAGACCGTAGTAGATTGGGGGATCTATCTATCGATAGCCGTTG
CCGTCTACAAAGGATAACGGGGTGTTTCTATTTCTATTGATGCCCATTGC
CACGAACAATTATGGGGGTCTATCAATAGCCACTGCCTCAAACAATAGAC
TTTTAAGAATACCTCATTCATCCATCTACAGCAAGCAGTATTGTCAACAT
CTACCTGGTATATTGCATATAACATACTTGAAAAATATGCATGCATATTT
GGTTTTGAAATCATCCGGGTGGCCGCTTTGCTGCCGCCCACCATCCACTC
AAAATCAACAGACATCCATACGCACTGCTTCTCTGCGCGGCCAGGGATTG
TGACCCCCGTGGCACACCTATAGACAGTATCGTGGCCGGCAATGACGATT
GATAGACGCGCGTCAAAACACATTGTGCACGACAGTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig174:280152..282538-

>mRNA_P-littoralis_Contig174.76.1 ID=mRNA_P-littoralis_Contig174.76.1|Name=mRNA_P-littoralis_Contig174.76.1|organism=Pylaiella littoralis U1_48|type=CDS|length=675bp|location=Sequence derived from alignment at P-littoralis_Contig174:280152..282538- (Pylaiella littoralis U1_48)
ATGCAGAGGCTCGGGTTATCAGCGAAATACTACGGCTACCGGTACCTCAC
ACACAGCTTAGCAGGATCATCTCGACGACTGTCAAGCTTCTCCGGCCCGG
ACCACGACAGCGACGTCTTTTACGCAGCGAAGACAGAGGCACGAACAACC
CCCGCTTACCAACAAGCTACTGCTCCTGCCATTGCAGCAACCGCGCCTTC
CACGAATGGTGGGGACCAGTGGTCGACGCCTGGAGGCTACGGTCCAGGAC
GGATGCCTATGGGCCAGGCATACGGCCCCCCATCGGGCGGCAGCAGCAAC
AGCAGCAGCAGCGACGGAAACAACAGCGGTCCCCACACCCACGACGCAGC
GAACACAGCAAACCCTTACGAGTACGTTCAGCCACAACCAACCTTCGACA
TGCAGAGCTCGACGCACCTGTCTCCCATAAAGCGGGTAGATGTACGGTCG
TACAAGGGCAGGGTTTTGGTGGATATTCGACAATTTTTCAGGGGTCCCGA
CGGTACCACGATGCCATCGAAGAAAGGCATAGCCCTGACCATACCTCAAT
GGAGACGACTCCAGGAGGCGATGGGCGACATTGACAGCAAGTTACGAGGG
ATGGAAGAGGCCACTACTGAAGAAATGAACGCTCACGAGCGTGGAGAGCA
GGGTCCTGGTGGGCGGGCACCATAG
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