mRNA_P-littoralis_Contig174.59.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig174.59.1
Unique NamemRNA_P-littoralis_Contig174.59.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig174.59.1 vs. uniprot
Match: A0A6H5L481_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L481_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 1.670e-17
Identity = 48/49 (97.96%), Postives = 48/49 (97.96%), Query Frame = 1 
Query:    1 KSKAANEAFRQKRLAQGDQITKAVKTLVDSVAARRVLDEEAAVRARETA 147
            KSKAANEAFRQKRLAQGDQITKAVKTL DSVAARRVLDEEAAVRARETA
Sbjct:  363 KSKAANEAFRQKRLAQGDQITKAVKTLADSVAARRVLDEEAAVRARETA 411
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig174.59.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L481_9PHAE1.670e-1797.96Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig174contigP-littoralis_Contig174:253703..253951 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size251
Hectar predicted targeting categoryother localisation
Exons1
Cds size249
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789838.5199733-CDS-P-littoralis_Contig174:253702..2539511680789838.5199733-CDS-P-littoralis_Contig174:253702..253951Pylaiella littoralis U1_48CDSP-littoralis_Contig174 253703..253951 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig174.59.1prot_P-littoralis_Contig174.59.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig174 253703..253951 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig174.59.1

>prot_P-littoralis_Contig174.59.1 ID=prot_P-littoralis_Contig174.59.1|Name=mRNA_P-littoralis_Contig174.59.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=83bp
KSKAANEAFRQKRLAQGDQITKAVKTLVDSVAARRVLDEEAAVRARETAP
PNPASRGRSTTCEGNSSFRRWVRLSTMSFVPQ*
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mRNA from alignment at P-littoralis_Contig174:253703..253951-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig174.59.1 ID=mRNA_P-littoralis_Contig174.59.1|Name=mRNA_P-littoralis_Contig174.59.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=249bp|location=Sequence derived from alignment at P-littoralis_Contig174:253703..253951- (Pylaiella littoralis U1_48)
AAATCAAAGGCTGCCAATGAGGCCTTCCGCCAGAAACGACTCGCCCAAGG
TGACCAGATTACTAAGGCCGTGAAGACGCTGGTGGACTCCGTTGCTGCGC
GGCGGGTTCTCGATGAAGAGGCTGCGGTTAGGGCACGCGAGACGGCCCCG
CCGAATCCCGCAAGCAGAGGAAGGTCAACAACATGCGAGGGCAACTCGAG
TTTTCGGAGGTGGGTTCGGCTCAGTACTATGAGCTTCGTGCCGCAATAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig174:253703..253951-

>mRNA_P-littoralis_Contig174.59.1 ID=mRNA_P-littoralis_Contig174.59.1|Name=mRNA_P-littoralis_Contig174.59.1|organism=Pylaiella littoralis U1_48|type=CDS|length=249bp|location=Sequence derived from alignment at P-littoralis_Contig174:253703..253951- (Pylaiella littoralis U1_48)
AAATCAAAGGCTGCCAATGAGGCCTTCCGCCAGAAACGACTCGCCCAAGG
TGACCAGATTACTAAGGCCGTGAAGACGCTGGTGGACTCCGTTGCTGCGC
GGCGGGTTCTCGATGAAGAGGCTGCGGTTAGGGCACGCGAGACGGCCCCG
CCGAATCCCGCAAGCAGAGGAAGGTCAACAACATGCGAGGGCAACTCGAG
TTTTCGGAGGTGGGTTCGGCTCAGTACTATGAGCTTCGTGCCGCAATAA
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