mRNA_P-littoralis_Contig174.54.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig174.54.1
Unique NamemRNA_P-littoralis_Contig174.54.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig174.54.1 vs. uniprot
Match: A0A6H5JBE2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE2_9PHAE)

HSP 1 Score: 206 bits (524), Expect = 7.730e-62
Identity = 118/128 (92.19%), Postives = 118/128 (92.19%), Query Frame = 1
Query:  109 MSAAAEGRVKDLHPEVALAAALAALADIQQDDMLSDAEAEPDXXXXXXXXXXXKRRKNDTSTCAWAQVLEDEDLKDPTSIAAKKFREDFRVPYPFFLRLVELAKKKDWFATAQRDAYGRRCHPVEHKV 492
            MSAAAEGRVKDLHPEVALAAALAAL DIQQDDMLSDAE    XXXXXXXXXXX   KNDTSTCAWAQVLEDEDLKDPTSIAAKKFREDFRVPYPFFLRLVEL KKKDWFAT QRDAYGRRCHPVEHKV
Sbjct:    1 MSAAAEGRVKDLHPEVALAAALAALDDIQQDDMLSDAEXXXXXXXXXXXXXXXXXXKNDTSTCAWAQVLEDEDLKDPTSIAAKKFREDFRVPYPFFLRLVELVKKKDWFATTQRDAYGRRCHPVEHKV 128          
BLAST of mRNA_P-littoralis_Contig174.54.1 vs. uniprot
Match: A0A6H5L0X4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0X4_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 1.080e-27
Identity = 62/119 (52.10%), Postives = 77/119 (64.71%), Query Frame = 1
Query:  142 LHPEVALAAALAALADIQQDDMLSD--AEAEPDXXXXXXXXXXXKRRKNDTSTCAWAQVLEDEDLKDPTSIAAKKFREDFRVPYPFFLRLVELAKKKDWFATAQRDAYGRRCHPVEHKV 492
            L P  ALA AL A+ ++Q++D+      E +P            +R++ D  TCAWAQ+LED+DL+D TSI AK+FR DFRVPY FFLRLV L K K+WF  A  DA GR  HPVEHKV
Sbjct:   55 LLPARALAVALVAVDEVQRNDLSQQDLLEEDPASDLPFERLARSQRQRKDVETCAWAQLLEDKDLEDSTSITAKQFRVDFRVPYTFFLRLVALVKSKNWFLAAATDAVGRASHPVEHKV 173          
BLAST of mRNA_P-littoralis_Contig174.54.1 vs. uniprot
Match: A0A6H5KLY4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLY4_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 1.220e-27
Identity = 50/74 (67.57%), Postives = 60/74 (81.08%), Query Frame = 1
Query:  268 KRRKNDTSTCAWAQVLEDEDLKDPTSIAAKKFREDFRVPYPFFLRLVELAKKKDWFATAQRDAYGRRCHPVEHK 489
            +R++ D  TCAWAQ+LED+DL+D TSI AK+FR DFRVPY FFLRLV L K K+WF+TA +DA GR  HPVEHK
Sbjct:   85 QRQRKDVETCAWAQLLEDKDLEDSTSITAKQFRVDFRVPYTFFLRLVALVKSKNWFSTAGKDAIGRASHPVEHK 158          
BLAST of mRNA_P-littoralis_Contig174.54.1 vs. uniprot
Match: A0A6H5JSI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSI1_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 1.480e-27
Identity = 55/101 (54.46%), Postives = 67/101 (66.34%), Query Frame = 1
Query:  187 DIQQDDMLSDAEAEPDXXXXXXXXXXXKRRKNDTSTCAWAQVLEDEDLKDPTSIAAKKFREDFRVPYPFFLRLVELAKKKDWFATAQRDAYGRRCHPVEHK 489
            D+ Q D+L   E +P            +R+K D  TCAWAQ+LED+DL+D TSI AK+FR DFRVP+ FFLRLV L K K+WF+TA  DA GR  HP EHK
Sbjct:   13 DLSQQDLL---EEDPANDLPRERLTRSQRQKKDVETCAWAQLLEDKDLEDSTSITAKQFRGDFRVPFTFFLRLVALVKSKNWFSTAVTDAVGRASHPGEHK 110          
BLAST of mRNA_P-littoralis_Contig174.54.1 vs. uniprot
Match: A0A6H5KSI7_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSI7_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 4.390e-15
Identity = 53/138 (38.41%), Postives = 73/138 (52.90%), Query Frame = 1
Query:  127 GRVKDLHPEVALAAALAALADIQQDD--------------MLSDAEAEPDXXXXXXXXXXXKR--RKNDTSTCAWAQVLEDEDLKDPTSIAAKKFREDFRVPYPFFLRLVELAKKKDWFATAQRDAYGRRCHPVEHKV 492
            G   DL     L+ ALAAL  IQ++D              +L D ++E +           +R  ++ D  T AW + L+D DL D T+ AAK FRE FRVPYPFF  LV+L++ K WF+  ++DA  R   P+E KV
Sbjct:    2 GTGDDLFEAAVLSVALAALHQIQEEDGRRRTARSVSYWDAVLFDEDSEDEEEVVGPKVKRTRRVTQRRDWRTSAWWEKLQDVDLADHTTAAAKVFRERFRVPYPFFQELVKLSRAKRWFSPGEKDAANREGIPLELKV 139          
BLAST of mRNA_P-littoralis_Contig174.54.1 vs. uniprot
Match: A0A6H5JQR5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQR5_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 1.390e-13
Identity = 44/103 (42.72%), Postives = 58/103 (56.31%), Query Frame = 1
Query:  220 EAEPDXXXXXXXXXXXKRRK----NDTSTCAWAQVLEDEDLKD--------PTSIAAKKFREDFRVPYPFFLRLVELAKKKDWFATAQRDAYGRRCHPVEHKV 492
            E +PD           KRR+     D +   WA  L++  LKD        PTS  A++FRE FR+PYPFF+ LV L K++DWF T ++DA GRR  PV+ KV
Sbjct:   59 ELDPDSEEEEEDNREIKRRRVYPRKDYNISGWAIQLQE--LKDLEVDGIVGPTSRPARRFRESFRLPYPFFVELVALVKQRDWFPTGKQDASGRRGIPVQLKV 159          
BLAST of mRNA_P-littoralis_Contig174.54.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 2.690e-13
Identity = 45/101 (44.55%), Postives = 60/101 (59.41%), Query Frame = 1
Query:  220 EAEPDXXXXXXXXXXXKRRK----NDTSTCAWA-QVLEDEDLK-----DPTSIAAKKFREDFRVPYPFFLRLVELAKKKDWFATAQRDAYGRRCHPVEHKV 492
            E +PD           KRR+     D +   WA Q+ E +DL+     DPTS  A++FRE FR+PYPFF+ LV L K++DWF T ++DA GRR  PV+ KV
Sbjct:   59 ELDPDSEEEEEDNREIKRRRVYPRKDYNISGWAIQLQELKDLEVDGIVDPTSRPARRFRESFRLPYPFFVELVALVKQRDWFPTGKQDASGRRGIPVQLKV 159          
BLAST of mRNA_P-littoralis_Contig174.54.1 vs. uniprot
Match: A0A6H5JCU6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCU6_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 3.090e-12
Identity = 36/74 (48.65%), Postives = 50/74 (67.57%), Query Frame = 1
Query:  271 RRKNDTSTCAWAQVLEDEDLKDPTSIAAKKFREDFRVPYPFFLRLVELAKKKDWFATAQRDAYGRRCHPVEHKV 492
            + + D ST AW   L++ DL D T+ AAK FR  FRVP+ FFL LV++A+ K WF+  ++DA GRR  P+E K+
Sbjct:   68 KERRDWSTSAWWLQLQNADLLDHTTEAAKVFRTRFRVPHAFFLELVKMARGKKWFSVREKDAVGRRGIPIELKL 141          
BLAST of mRNA_P-littoralis_Contig174.54.1 vs. uniprot
Match: A0A6H5KYT9_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYT9_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 1.070e-11
Identity = 34/75 (45.33%), Postives = 49/75 (65.33%), Query Frame = 1
Query:  274 RKNDTSTCAWAQVLEDEDL--KDPTSIAAKKFREDFRVPYPFFLRLVELAKKKDWFATAQRDAYGRRCHPVEHKV 492
            RK+ T +  W +++E  +    D T+  A++FR +FRVPYPFF+ LVEL + +DWF T + D  GR+  PVE KV
Sbjct:   69 RKDYTKSGWWQELMELRETGETDHTTREARRFRNNFRVPYPFFVHLVELVRDRDWFPTGESDVTGRQAVPVELKV 143          
BLAST of mRNA_P-littoralis_Contig174.54.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 9.580e-11
Identity = 34/75 (45.33%), Postives = 49/75 (65.33%), Query Frame = 1
Query:  274 RKNDTSTCAWAQVLEDEDL--KDPTSIAAKKFREDFRVPYPFFLRLVELAKKKDWFATAQRDAYGRRCHPVEHKV 492
            RK+ T +  W +++E  +    D T+  A++FR +FRVPYPFF+ LVEL + +DWF T + D  GR+  PVE KV
Sbjct:  101 RKDYTKSGWWQELMELRETGETDHTTREARRFRNNFRVPYPFFVHLVELVRDRDWFPTGESDVTGRQAVPVELKV 175          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig174.54.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A6H5JBE2_9PHAE7.730e-6292.19Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L0X4_9PHAE1.080e-2752.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLY4_9PHAE1.220e-2767.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JSI1_9PHAE1.480e-2754.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSI7_9PHAE4.390e-1538.41DDE Tnp4 domain-containing protein (Fragment) n=1 ... [more]
A0A6H5JQR5_9PHAE1.390e-1342.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAU4_9PHAE2.690e-1344.55Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCU6_9PHAE3.090e-1248.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KYT9_9PHAE1.070e-1145.33Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPH7_9PHAE9.580e-1145.33Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig174contigP-littoralis_Contig174:249675..250166 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size492
Hectar predicted targeting categorysignal peptide
Exons1
Cds size486
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789838.426302-UTR-P-littoralis_Contig174:249674..2496801680789838.426302-UTR-P-littoralis_Contig174:249674..249680Pylaiella littoralis U1_48UTRP-littoralis_Contig174 249675..249680 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789838.4362075-CDS-P-littoralis_Contig174:249680..2501661680789838.4362075-CDS-P-littoralis_Contig174:249680..250166Pylaiella littoralis U1_48CDSP-littoralis_Contig174 249681..250166 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig174.54.1prot_P-littoralis_Contig174.54.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig174 249681..250166 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig174.54.1

>prot_P-littoralis_Contig174.54.1 ID=prot_P-littoralis_Contig174.54.1|Name=mRNA_P-littoralis_Contig174.54.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=162bp
MPARLPSLLLLLLLVVGGQRVASSSSPASSVHPIMSAAAEGRVKDLHPEV
ALAAALAALADIQQDDMLSDAEAEPDEEPRREKRGRRKRRKNDTSTCAWA
QVLEDEDLKDPTSIAAKKFREDFRVPYPFFLRLVELAKKKDWFATAQRDA
YGRRCHPVEHKV
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mRNA from alignment at P-littoralis_Contig174:249675..250166+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig174.54.1 ID=mRNA_P-littoralis_Contig174.54.1|Name=mRNA_P-littoralis_Contig174.54.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=492bp|location=Sequence derived from alignment at P-littoralis_Contig174:249675..250166+ (Pylaiella littoralis U1_48)
AGCGCTATGCCAGCTCGGCTGCCATCACTGCTGCTCCTACTGCTCCTTGT GGTGGGTGGTCAGCGTGTTGCTTCATCGTCGTCTCCCGCCAGCAGCGTTC ATCCCATCATGTCCGCAGCAGCAGAGGGCAGAGTCAAAGACCTCCATCCA GAAGTCGCGCTTGCGGCAGCGCTGGCTGCTCTGGCTGACATCCAACAGGA TGACATGCTGTCAGATGCCGAGGCCGAACCTGACGAGGAACCCCGGCGCG AGAAGCGCGGTCGAAGGAAGAGAAGGAAGAACGACACCAGCACGTGTGCT TGGGCGCAGGTGCTGGAGGATGAAGACCTAAAGGATCCTACAAGCATAGC GGCGAAGAAGTTTCGAGAGGACTTTCGCGTCCCCTACCCCTTTTTTCTGC GGCTTGTGGAGTTGGCGAAGAAGAAGGATTGGTTCGCCACCGCGCAGCGC GACGCGTACGGGCGGCGATGCCACCCAGTGGAGCACAAAGTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig174:249675..250166+

>mRNA_P-littoralis_Contig174.54.1 ID=mRNA_P-littoralis_Contig174.54.1|Name=mRNA_P-littoralis_Contig174.54.1|organism=Pylaiella littoralis U1_48|type=CDS|length=486bp|location=Sequence derived from alignment at P-littoralis_Contig174:249675..250166+ (Pylaiella littoralis U1_48)
ATGCCAGCTCGGCTGCCATCACTGCTGCTCCTACTGCTCCTTGTGGTGGG
TGGTCAGCGTGTTGCTTCATCGTCGTCTCCCGCCAGCAGCGTTCATCCCA
TCATGTCCGCAGCAGCAGAGGGCAGAGTCAAAGACCTCCATCCAGAAGTC
GCGCTTGCGGCAGCGCTGGCTGCTCTGGCTGACATCCAACAGGATGACAT
GCTGTCAGATGCCGAGGCCGAACCTGACGAGGAACCCCGGCGCGAGAAGC
GCGGTCGAAGGAAGAGAAGGAAGAACGACACCAGCACGTGTGCTTGGGCG
CAGGTGCTGGAGGATGAAGACCTAAAGGATCCTACAAGCATAGCGGCGAA
GAAGTTTCGAGAGGACTTTCGCGTCCCCTACCCCTTTTTTCTGCGGCTTG
TGGAGTTGGCGAAGAAGAAGGATTGGTTCGCCACCGCGCAGCGCGACGCG
TACGGGCGGCGATGCCACCCAGTGGAGCACAAAGTG
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