mRNA_P-littoralis_Contig174.54.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig174.54.1 vs. uniprot
Match: A0A6H5JBE2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE2_9PHAE) HSP 1 Score: 206 bits (524), Expect = 7.730e-62 Identity = 118/128 (92.19%), Postives = 118/128 (92.19%), Query Frame = 1
Query: 109 MSAAAEGRVKDLHPEVALAAALAALADIQQDDMLSDAEAEPDXXXXXXXXXXXKRRKNDTSTCAWAQVLEDEDLKDPTSIAAKKFREDFRVPYPFFLRLVELAKKKDWFATAQRDAYGRRCHPVEHKV 492
MSAAAEGRVKDLHPEVALAAALAAL DIQQDDMLSDAE XXXXXXXXXXX KNDTSTCAWAQVLEDEDLKDPTSIAAKKFREDFRVPYPFFLRLVEL KKKDWFAT QRDAYGRRCHPVEHKV
Sbjct: 1 MSAAAEGRVKDLHPEVALAAALAALDDIQQDDMLSDAEXXXXXXXXXXXXXXXXXXKNDTSTCAWAQVLEDEDLKDPTSIAAKKFREDFRVPYPFFLRLVELVKKKDWFATTQRDAYGRRCHPVEHKV 128
BLAST of mRNA_P-littoralis_Contig174.54.1 vs. uniprot
Match: A0A6H5L0X4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0X4_9PHAE) HSP 1 Score: 116 bits (291), Expect = 1.080e-27 Identity = 62/119 (52.10%), Postives = 77/119 (64.71%), Query Frame = 1
Query: 142 LHPEVALAAALAALADIQQDDMLSD--AEAEPDXXXXXXXXXXXKRRKNDTSTCAWAQVLEDEDLKDPTSIAAKKFREDFRVPYPFFLRLVELAKKKDWFATAQRDAYGRRCHPVEHKV 492
L P ALA AL A+ ++Q++D+ E +P +R++ D TCAWAQ+LED+DL+D TSI AK+FR DFRVPY FFLRLV L K K+WF A DA GR HPVEHKV
Sbjct: 55 LLPARALAVALVAVDEVQRNDLSQQDLLEEDPASDLPFERLARSQRQRKDVETCAWAQLLEDKDLEDSTSITAKQFRVDFRVPYTFFLRLVALVKSKNWFLAAATDAVGRASHPVEHKV 173
BLAST of mRNA_P-littoralis_Contig174.54.1 vs. uniprot
Match: A0A6H5KLY4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLY4_9PHAE) HSP 1 Score: 110 bits (275), Expect = 1.220e-27 Identity = 50/74 (67.57%), Postives = 60/74 (81.08%), Query Frame = 1
Query: 268 KRRKNDTSTCAWAQVLEDEDLKDPTSIAAKKFREDFRVPYPFFLRLVELAKKKDWFATAQRDAYGRRCHPVEHK 489
+R++ D TCAWAQ+LED+DL+D TSI AK+FR DFRVPY FFLRLV L K K+WF+TA +DA GR HPVEHK
Sbjct: 85 QRQRKDVETCAWAQLLEDKDLEDSTSITAKQFRVDFRVPYTFFLRLVALVKSKNWFSTAGKDAIGRASHPVEHK 158
BLAST of mRNA_P-littoralis_Contig174.54.1 vs. uniprot
Match: A0A6H5JSI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSI1_9PHAE) HSP 1 Score: 108 bits (270), Expect = 1.480e-27 Identity = 55/101 (54.46%), Postives = 67/101 (66.34%), Query Frame = 1
Query: 187 DIQQDDMLSDAEAEPDXXXXXXXXXXXKRRKNDTSTCAWAQVLEDEDLKDPTSIAAKKFREDFRVPYPFFLRLVELAKKKDWFATAQRDAYGRRCHPVEHK 489
D+ Q D+L E +P +R+K D TCAWAQ+LED+DL+D TSI AK+FR DFRVP+ FFLRLV L K K+WF+TA DA GR HP EHK
Sbjct: 13 DLSQQDLL---EEDPANDLPRERLTRSQRQKKDVETCAWAQLLEDKDLEDSTSITAKQFRGDFRVPFTFFLRLVALVKSKNWFSTAVTDAVGRASHPGEHK 110
BLAST of mRNA_P-littoralis_Contig174.54.1 vs. uniprot
Match: A0A6H5KSI7_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSI7_9PHAE) HSP 1 Score: 81.3 bits (199), Expect = 4.390e-15 Identity = 53/138 (38.41%), Postives = 73/138 (52.90%), Query Frame = 1
Query: 127 GRVKDLHPEVALAAALAALADIQQDD--------------MLSDAEAEPDXXXXXXXXXXXKR--RKNDTSTCAWAQVLEDEDLKDPTSIAAKKFREDFRVPYPFFLRLVELAKKKDWFATAQRDAYGRRCHPVEHKV 492
G DL L+ ALAAL IQ++D +L D ++E + +R ++ D T AW + L+D DL D T+ AAK FRE FRVPYPFF LV+L++ K WF+ ++DA R P+E KV
Sbjct: 2 GTGDDLFEAAVLSVALAALHQIQEEDGRRRTARSVSYWDAVLFDEDSEDEEEVVGPKVKRTRRVTQRRDWRTSAWWEKLQDVDLADHTTAAAKVFRERFRVPYPFFQELVKLSRAKRWFSPGEKDAANREGIPLELKV 139
BLAST of mRNA_P-littoralis_Contig174.54.1 vs. uniprot
Match: A0A6H5JQR5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQR5_9PHAE) HSP 1 Score: 73.9 bits (180), Expect = 1.390e-13 Identity = 44/103 (42.72%), Postives = 58/103 (56.31%), Query Frame = 1
Query: 220 EAEPDXXXXXXXXXXXKRRK----NDTSTCAWAQVLEDEDLKD--------PTSIAAKKFREDFRVPYPFFLRLVELAKKKDWFATAQRDAYGRRCHPVEHKV 492
E +PD KRR+ D + WA L++ LKD PTS A++FRE FR+PYPFF+ LV L K++DWF T ++DA GRR PV+ KV
Sbjct: 59 ELDPDSEEEEEDNREIKRRRVYPRKDYNISGWAIQLQE--LKDLEVDGIVGPTSRPARRFRESFRLPYPFFVELVALVKQRDWFPTGKQDASGRRGIPVQLKV 159
BLAST of mRNA_P-littoralis_Contig174.54.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE) HSP 1 Score: 76.6 bits (187), Expect = 2.690e-13 Identity = 45/101 (44.55%), Postives = 60/101 (59.41%), Query Frame = 1
Query: 220 EAEPDXXXXXXXXXXXKRRK----NDTSTCAWA-QVLEDEDLK-----DPTSIAAKKFREDFRVPYPFFLRLVELAKKKDWFATAQRDAYGRRCHPVEHKV 492
E +PD KRR+ D + WA Q+ E +DL+ DPTS A++FRE FR+PYPFF+ LV L K++DWF T ++DA GRR PV+ KV
Sbjct: 59 ELDPDSEEEEEDNREIKRRRVYPRKDYNISGWAIQLQELKDLEVDGIVDPTSRPARRFRESFRLPYPFFVELVALVKQRDWFPTGKQDASGRRGIPVQLKV 159
BLAST of mRNA_P-littoralis_Contig174.54.1 vs. uniprot
Match: A0A6H5JCU6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCU6_9PHAE) HSP 1 Score: 73.6 bits (179), Expect = 3.090e-12 Identity = 36/74 (48.65%), Postives = 50/74 (67.57%), Query Frame = 1
Query: 271 RRKNDTSTCAWAQVLEDEDLKDPTSIAAKKFREDFRVPYPFFLRLVELAKKKDWFATAQRDAYGRRCHPVEHKV 492
+ + D ST AW L++ DL D T+ AAK FR FRVP+ FFL LV++A+ K WF+ ++DA GRR P+E K+
Sbjct: 68 KERRDWSTSAWWLQLQNADLLDHTTEAAKVFRTRFRVPHAFFLELVKMARGKKWFSVREKDAVGRRGIPIELKL 141
BLAST of mRNA_P-littoralis_Contig174.54.1 vs. uniprot
Match: A0A6H5KYT9_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYT9_9PHAE) HSP 1 Score: 69.3 bits (168), Expect = 1.070e-11 Identity = 34/75 (45.33%), Postives = 49/75 (65.33%), Query Frame = 1
Query: 274 RKNDTSTCAWAQVLEDEDL--KDPTSIAAKKFREDFRVPYPFFLRLVELAKKKDWFATAQRDAYGRRCHPVEHKV 492
RK+ T + W +++E + D T+ A++FR +FRVPYPFF+ LVEL + +DWF T + D GR+ PVE KV
Sbjct: 69 RKDYTKSGWWQELMELRETGETDHTTREARRFRNNFRVPYPFFVHLVELVRDRDWFPTGESDVTGRQAVPVELKV 143
BLAST of mRNA_P-littoralis_Contig174.54.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE) HSP 1 Score: 69.3 bits (168), Expect = 9.580e-11 Identity = 34/75 (45.33%), Postives = 49/75 (65.33%), Query Frame = 1
Query: 274 RKNDTSTCAWAQVLEDEDL--KDPTSIAAKKFREDFRVPYPFFLRLVELAKKKDWFATAQRDAYGRRCHPVEHKV 492
RK+ T + W +++E + D T+ A++FR +FRVPYPFF+ LVEL + +DWF T + D GR+ PVE KV
Sbjct: 101 RKDYTKSGWWQELMELRETGETDHTTREARRFRNNFRVPYPFFVHLVELVRDRDWFPTGESDVTGRQAVPVELKV 175 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig174.54.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 17
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig174.54.1 >prot_P-littoralis_Contig174.54.1 ID=prot_P-littoralis_Contig174.54.1|Name=mRNA_P-littoralis_Contig174.54.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=162bp MPARLPSLLLLLLLVVGGQRVASSSSPASSVHPIMSAAAEGRVKDLHPEVback to top mRNA from alignment at P-littoralis_Contig174:249675..250166+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig174.54.1 ID=mRNA_P-littoralis_Contig174.54.1|Name=mRNA_P-littoralis_Contig174.54.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=492bp|location=Sequence derived from alignment at P-littoralis_Contig174:249675..250166+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig174:249675..250166+ >mRNA_P-littoralis_Contig174.54.1 ID=mRNA_P-littoralis_Contig174.54.1|Name=mRNA_P-littoralis_Contig174.54.1|organism=Pylaiella littoralis U1_48|type=CDS|length=486bp|location=Sequence derived from alignment at P-littoralis_Contig174:249675..250166+ (Pylaiella littoralis U1_48)back to top |