mRNA_P-littoralis_Contig174.35.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig174.35.1 vs. uniprot
Match: D7FYS2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYS2_ECTSI) HSP 1 Score: 454 bits (1169), Expect = 3.560e-139 Identity = 339/669 (50.67%), Postives = 399/669 (59.64%), Query Frame = 3
Query: 1983 EFQGTRHALSRLKEIVAHEWTQQEYRAGIALGQVDPGVTDLEYTRRRLESGSLYALLEEESRDYLRAGVFADADMELLGKGFAQVQADKKLAPKSGEVAAEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAR-------------GEASWADRLRDFQMDIPASAAYNEPTSNSEEGAXXXXXXDGVDVGAEQDVVTAQQG--EEEDDPVTWDGVGVDAATVILNRKQFDIRCKAYEGLNNVSSDVKTNVLLEKTHRLHHDHATIITAKRRTLEGTLHNVRQQLNGREEQLRHLRIGQSGANPHDAAMLANLKESEAAVMARVTEKKVQMDMIVEEANKVVQWERTMDLARREAMQHAADMHGHGEAFTAGAQPERNELVQAMMSQKVNIMLLSTFCKLRGPWLAPRGYVRINHPAPNAAPDDAA---------PGENTVVSAITGASISSSTDTSVPVSAARDQVSPRSSTNGSVEEE------------------GRTSISSSPTNAARGXXXXXXXXXXXXXXXXNPEKKQIKLKLLPPIEAGRRTEESIDDSAPPA--DLAGRKGE---------VGKGVDEAADDAASRLADRSDP--SSIAVVVTTGGGKEAAMARLAGTRGAVT----EGVNDDYVVSNGLAAMDVAVPTVSSPAGG 3812
EFQGTR+A SRLK+ +AHEW +QEYR GIALGQVD G+T++E+ RRR+E GSLYALLE+ESRDYLR G F DAD+ELLG FAQ QA K+L P + + XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX + G ASWADRLRDFQ+DIPASA Y+ S+S G DG V AQ+G ++EDD WDG+GVDAATVI +R+QFD+RC+AYE LN S + KTN LLEKTHRL DHA I+ AKR TLEGTL NVRQQLNGRE+QLRH+ + Q G NP D ++A L ESEAA+M RV EKKVQM MI++EANKVVQWE+T +LARREAM HAADMHGHG F G+ ERNELVQ+MMSQKVNIMLLSTFCKLRGPWLAP GYVR + A A P T V + S+S++ +T+ G S P XX P K+QIKL+LLPP EA + E+ D A G++ E G AA+ ASR D S SS+A V+ GG KEAAMA LAG RG + +GV+ +G A MD T S GG
Sbjct: 7 EFQGTRYARSRLKQTLAHEWARQEYRTGIALGQVDRGMTEMEFVRRRVEGGSLYALLEQESRDYLRVGPFTDADVELLGMSFAQAQASKELPPPAAAPKPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSGKDAAAAKAGAAAEGGVASWADRLRDFQIDIPASATYDGLASDSSRGGGAADRTDGQVVAE-----AAQKGGSQQEDDASAWDGIGVDAATVIRHRRQFDLRCRAYEALNTASRNDKTNGLLEKTHRLRQDHAAIVAAKRVTLEGTLQNVRQQLNGREDQLRHVHMEQRGVNPLDTTVVAGLNESEAAIMTRVAEKKVQMAMIIDEANKVVQWEQTAELARREAMHHAADMHGHGGGFAPGSAKERNELVQSMMSQKVNIMLLSTFCKLRGPWLAPSGYVRGKRSVSDGAAGSAVAAAEEKGAEPDPRTAVVSSPSLSVSTAENTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNDGAGSGPA------------AGXXAGVEAKPGKRQIKLRLLPPSEAEPKKEKGDGDPGQDAHRQQPGQQAEGGGDAGAACTGPSYTVAAEGTASRAGDSSGDGFSSMAAVMAMGG-KEAAMASLAGARGTGSVREQDGVDAGSKGGDGPAPMDATASTASGNEGG 657
BLAST of mRNA_P-littoralis_Contig174.35.1 vs. uniprot
Match: A0A6H5KV99_9PHAE (PDZ domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV99_9PHAE) HSP 1 Score: 150 bits (378), Expect = 1.470e-38 Identity = 77/98 (78.57%), Postives = 86/98 (87.76%), Query Frame = 3
Query: 630 MDMARVSQDP--RAGQQKQQQQQWDRFEVVLSKPSGRQKLGMILKHAQIVGEDRLKRGAYLAGLAEGPSVAQDLGLTPKDRLVLVEGLDVKLLPFDRI 917
MD A +DP R+ Q+ QQQQWDRFEVVLSKPSG QKLGM+LKHAQ+ GE+RLKRGAYLAGLAEGPS+AQDLGL+PKDRL+LVEGLDVK LPFDRI
Sbjct: 1 MDTAGAVEDPAQRSSGQQPQQQQWDRFEVVLSKPSGSQKLGMVLKHAQVCGEERLKRGAYLAGLAEGPSLAQDLGLSPKDRLILVEGLDVKTLPFDRI 98
BLAST of mRNA_P-littoralis_Contig174.35.1 vs. uniprot
Match: D7FYS1_ECTSI (PDZ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYS1_ECTSI) HSP 1 Score: 149 bits (376), Expect = 4.010e-38 Identity = 73/88 (82.95%), Postives = 80/88 (90.91%), Query Frame = 3
Query: 747 MILKHAQIVGEDRLKRGAYLAGLAEGPSVAQDLGLTPKDRLVLVEGLDVKLLPFDRIVGLIRNATFPLTLVWSRQRKAGVATKLPGTA 1010
M+LKHAQ+ GE+RLKRGAYLAGLAEGPS+AQDLGL+PKDRL+LVEGLDVK LPFDRIVGLIR ATFPLTLVWSRQRKAG+A G A
Sbjct: 1 MVLKHAQVFGEERLKRGAYLAGLAEGPSLAQDLGLSPKDRLILVEGLDVKTLPFDRIVGLIRKATFPLTLVWSRQRKAGIAATSKGRA 88 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig174.35.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig174.35.1 >prot_P-littoralis_Contig174.35.1 ID=prot_P-littoralis_Contig174.35.1|Name=mRNA_P-littoralis_Contig174.35.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=1128bp MDMARVSQDPRAGQQKQQQQQWDRFEVVLSKPSGRQKLGMILKHAQIVGEback to top mRNA from alignment at P-littoralis_Contig174:170060..193510+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig174.35.1 ID=mRNA_P-littoralis_Contig174.35.1|Name=mRNA_P-littoralis_Contig174.35.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=23451bp|location=Sequence derived from alignment at P-littoralis_Contig174:170060..193510+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig174:170060..193510+ >mRNA_P-littoralis_Contig174.35.1 ID=mRNA_P-littoralis_Contig174.35.1|Name=mRNA_P-littoralis_Contig174.35.1|organism=Pylaiella littoralis U1_48|type=CDS|length=3384bp|location=Sequence derived from alignment at P-littoralis_Contig174:170060..193510+ (Pylaiella littoralis U1_48)back to top |