mRNA_P-littoralis_Contig174.23.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig174.23.1
Unique NamemRNA_P-littoralis_Contig174.23.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig174.23.1 vs. uniprot
Match: D7G116_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G116_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 6.330e-17
Identity = 35/41 (85.37%), Postives = 39/41 (95.12%), Query Frame = 1 
Query:  250 LDGAYKIQEVVNFNGGRVQPQSLNPKHALVFRVEIGGHMMA 372
            +DGAYKI E+VNFNGGRVQPQSL PKHAL+FRVEIGGHM+A
Sbjct:    1 MDGAYKIGELVNFNGGRVQPQSLEPKHALIFRVEIGGHMVA 41
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig174.23.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G116_ECTSI6.330e-1785.37Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig174contigP-littoralis_Contig174:106558..108488 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size481
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-19_002120.1
Cds size402
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789836.801417-CDS-P-littoralis_Contig174:106557..1067821680789836.801417-CDS-P-littoralis_Contig174:106557..106782Pylaiella littoralis U1_48CDSP-littoralis_Contig174 106558..106782 +
1680789836.8112392-CDS-P-littoralis_Contig174:107224..1072731680789836.8112392-CDS-P-littoralis_Contig174:107224..107273Pylaiella littoralis U1_48CDSP-littoralis_Contig174 107225..107273 +
1680789836.822356-CDS-P-littoralis_Contig174:107667..1077591680789836.822356-CDS-P-littoralis_Contig174:107667..107759Pylaiella littoralis U1_48CDSP-littoralis_Contig174 107668..107759 +
1680789836.836214-CDS-P-littoralis_Contig174:108373..1084091680789836.836214-CDS-P-littoralis_Contig174:108373..108409Pylaiella littoralis U1_48CDSP-littoralis_Contig174 108374..108409 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789836.8486454-UTR-P-littoralis_Contig174:108409..1084881680789836.8486454-UTR-P-littoralis_Contig174:108409..108488Pylaiella littoralis U1_48UTRP-littoralis_Contig174 108410..108488 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig174.23.1prot_P-littoralis_Contig174.23.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig174 106558..108409 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig174.23.1

>prot_P-littoralis_Contig174.23.1 ID=prot_P-littoralis_Contig174.23.1|Name=mRNA_P-littoralis_Contig174.23.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=134bp
MLYKNSQDDHCDEYEFGIRTLPPPLEELLYGAGCHLFLEALRKAGILEGA
NCITIIAPNDDAFHAGFYPDCFFCDDSSWGLHILDGAYKIQEVVNFNGGR
VQPQSLNPKHALVFRVEIGGHMMACFRRNQAGT*
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mRNA from alignment at P-littoralis_Contig174:106558..108488+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig174.23.1 ID=mRNA_P-littoralis_Contig174.23.1|Name=mRNA_P-littoralis_Contig174.23.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1931bp|location=Sequence derived from alignment at P-littoralis_Contig174:106558..108488+ (Pylaiella littoralis U1_48)
ATGCTGTATAAAAATAGTCAGGATGATCATTGCGACGAGTACGAATTTGG
GATCCGAACTTTGCCCCCACCTTTGGAAGAGCTGCTGTACGGTGCGGGTT
GTCACCTGTTCCTCGAAGCGTTGCGGAAAGCGGGAATACTGGAGGGGGCG
AACTGTATTACAATCATCGCACCGAACGATGATGCTTTCCATGCAGGTTT
CTATCCAGACTGCTTCTTCTGCGATGTATTGCTCGTTTATACATCGTCGT
AGATCATCAGTTATAGCAGGTGATGATGCTGTCCTGTGAGATTGAAGCCA
AGGAGGAAGGGTTGACGGCGAGAAGCATATATGTGCTGAATGCAGAAGGT
GCACACGTAGTACCTGATATGTGTCCCTGTCGCGCCCGGAACGAGTGATG
TTGCTCAATACCTCTATCCTCACATCAACGTGTTTTACACACACAAAGGC
ATTTTGAGGTTTAGAAAGCGCACACCCAGACACAGCATCACATAGAACAT
CAACTCCTGCGATCGTGGTAGCCATGACCCTCTTTGCAACCGGATAATGT
TACAGCTCGTGTTGACATATCCGTTTTCCGCGGGCTTGTATCGCCACATA
CATTGTCTGTCTCGTTCATGGACAAATATCCCCTTTCACGCACACACAGC
GGACGCCTTTCTTTGAGGATTCTTCGTGGGGCCTTCATATCTTGGACGGT
GCCTACAAGATACAAGGTTAGTTGATAATATGCTACTCAGAGGGTCTGTT
GGAGGTATCACATTTCTAGCGCATATGGAGTAGATATATTGTATGTGCAT
CACTATGTACATCAGCGCTTGCATCCCACGCCTACTTCACACCATTCCCA
TCGCAGTGCTACTACTGACCGTACATCATGACAGAGTGGTACCAATTCAG
ACCTCTGCTCTATTTGTCTTTGTCGTACATAGGTCGAGTCGAAACAACCG
GTGGAGCTACGAGGAGGCTTCCGAGGGCTGTCGTTGCTGTTTTCATGACT
TTCGCACAGCTCAAAACAAACCCTGTACCTAATCATATTTCGCTTGTTCG
TTGATCCTGTCGTCGACCCGCATACTTGAGTCCGTCCTGCTGCTATCTCG
ATTAAAATAGAAGTGGTTAATTTCAACGGGGGCAGGGTACAGCCTCAGAG
CCTAAATCCGAAGCACGCCCTCGTTTTTCGCGTCGAGATCGGCGGCCACA
TGGTGCGTTCACATACTATAGACGTAGATTCACGGCTACAGCTGTGCTGT
CTATGTGCTCATCTGTCATGGAAGTACACGTGATGACCGTCTTTGGGCAC
TGGTCTTGATTGCACTGTAATTTAGTCAGCGCTGACTGTGAAGTCGGGTG
GTTACGCCATCATCTGAAGAGGTCAAAGCCAGAGGTTCGATTCCCGCTTG
TGGCACTTCCTTTTGAGGCTCCACCACGAATCCGCGGCGTTTGGTAAGGG
GTCCGGCCCCGGAGATCACTGTCATCGCCGTATCTGGGAGGCCAAGAGCT
CAAAGTCAACTATTTTAATAGATAAATGATCCACCTCACTACACAGTCAA
CGCTGACTGTGTAGTCGGGGGTTAGCCTTTGTCTAATAGATGGCGCCGTT
CTACATGCTGCTTCAGAGGATCACCACGCGCTTAGAAGCTGTAATAATAG
TACGAAGTACGAGTAACAATGCTCAGATTCAGAGAGTAAAGTACGAAATA
GTGCATGATGCTACGCTGTCTATGGACGATGTGTGCTTCTACGTTCGTTC
CTGCCAACTGTTTACTGACTGGGCTACCGGCTGCTTGCTGTCGTGTGCCG
TATCAATTAATTGCAGATGGCGTGTTTCCGGCGAAACCAAGCCGGCACGT
AGAACGCGCTTGGTGAAGACCGATCTCGTCGCTCGAAATGGGGTATTCGT
ACAGGTTATAGACCGAATCTTGTACGTGGAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig174:106558..108488+

>mRNA_P-littoralis_Contig174.23.1 ID=mRNA_P-littoralis_Contig174.23.1|Name=mRNA_P-littoralis_Contig174.23.1|organism=Pylaiella littoralis U1_48|type=CDS|length=402bp|location=Sequence derived from alignment at P-littoralis_Contig174:106558..108488+ (Pylaiella littoralis U1_48)
ATGCTGTATAAAAATAGTCAGGATGATCATTGCGACGAGTACGAATTTGG
GATCCGAACTTTGCCCCCACCTTTGGAAGAGCTGCTGTACGGTGCGGGTT
GTCACCTGTTCCTCGAAGCGTTGCGGAAAGCGGGAATACTGGAGGGGGCG
AACTGTATTACAATCATCGCACCGAACGATGATGCTTTCCATGCAGGTTT
CTATCCAGACTGCTTCTTCTGCGATGATTCTTCGTGGGGCCTTCATATCT
TGGACGGTGCCTACAAGATACAAGAAGTGGTTAATTTCAACGGGGGCAGG
GTACAGCCTCAGAGCCTAAATCCGAAGCACGCCCTCGTTTTTCGCGTCGA
GATCGGCGGCCACATGATGGCGTGTTTCCGGCGAAACCAAGCCGGCACGT
AG
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