mRNA_P-littoralis_Contig174.16.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig174.16.1
Unique NamemRNA_P-littoralis_Contig174.16.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig174.16.1 vs. uniprot
Match: D7FVM7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVM7_ECTSI)

HSP 1 Score: 135 bits (340), Expect = 2.580e-35
Identity = 69/135 (51.11%), Postives = 88/135 (65.19%), Query Frame = 1
Query:    1 EWMWFVDRHKYSSAQDAIRCEGELTDVVREVDRRNEPKGGTGLLFPTKVFLEFVLTLESGYYHILSQPFLLGAYRGDFPEEILRVILESPAVQSSWAACWTARNGDGEAIAVDPKVSREVFEFVPRKYQNCRMED 405
            EW+ FVD +K +SA  A+  + EL  +V EV RR++   G GLLF TKVF EF   LE GY+HILS+PFLLGAY GD P E LRV+ E+ AV+ +WA C    +G       D KV+ EVF F+ +K+ NCRM D
Sbjct:  228 EWVSFVDLNKSASAGAAVEKDKELEHLVGEVKRRHDEINGAGLLFATKVFFEFTYALEIGYFHILSKPFLLGAYLGDLPGETLRVVREATAVRDAWAECCPPSSGSVN-FEWDSKVAHEVFLFIVQKWHNCRMGD 361          
BLAST of mRNA_P-littoralis_Contig174.16.1 vs. uniprot
Match: A0A6H5K7M3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7M3_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 8.540e-34
Identity = 63/116 (54.31%), Postives = 80/116 (68.97%), Query Frame = 1
Query:    1 EWMWFVDRHKYSSAQDAIRCEGELTDVVREVDRRNEPKGGTGLLFPTKVFLEFVLTLESGYYHILSQPFLLGAYRGDFPEEILRVILESPAVQSSWAACWTARNGDGEAIAVDPKV 348
            EWMW VDRHKY S + A   E EL  V  EV RRN+P    GL+F T +FL+ +LTLESGY+H+LSQP  LG+Y G+ PEEILR++ ESP VQ +W AC  AR  +G +   DP++
Sbjct:  237 EWMWIVDRHKYPSKRAAEGNEMELRGVTEEVQRRNDPTRPRGLVFVTSLFLKLLLTLESGYFHVLSQPAFLGSYLGNLPEEILRLVSESPTVQRAWDACCQAR--EGGSFHADPEM 350          
BLAST of mRNA_P-littoralis_Contig174.16.1 vs. uniprot
Match: A0A6H5KW14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW14_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 6.780e-31
Identity = 65/165 (39.39%), Postives = 97/165 (58.79%), Query Frame = 1
Query:    1 EWMWFVDRHKYSSAQDAIRCEGELTDVVREVDRRNEPKGGTGLLFPTKVFLEFVLTLESGYYHILSQPFLLGAYRGDFPEEILRVILESPAVQSSWAACWTARNGDGEAIAVDPKVSREVFEFVPRKYQNCRMEDWTRRVSRMTSMSKAQASVALRTELKVTSDK 495
            EW + V  +   S+  AI  +  L D+V EVD RN+P  G GLLFPT  + EFV  +E+G YH L  P+ LG Y GD   EILRV+ ES  V+ +WA C  +           P++  ++++FV +K+ N RM D+ RR+S+ +++  ++  +ALR  L+ TS K
Sbjct:  167 EWDFIVQHNHSPSSAGAIERDPILQDMVGEVDARNDPVNGAGLLFPTLAWYEFVFHVENGIYHFLRDPYFLGTYLGDLSAEILRVVTESSEVRRAWAKCCPSAVAP-PPFEAQPEILDDIYKFVLQKFHNVRMGDFARRLSQNSTLRLSKGELALRQNLRATSAK 330          
BLAST of mRNA_P-littoralis_Contig174.16.1 vs. uniprot
Match: D7G5R0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5R0_ECTSI)

HSP 1 Score: 107 bits (266), Expect = 4.990e-25
Identity = 55/121 (45.45%), Postives = 73/121 (60.33%), Query Frame = 1
Query:    1 EWMWFVDRHKYSSAQDAIRCEGELTDVVREVDRRNEPKGGTGLLFPTKVFLEFVLTLESGYYHILSQPFLLGAYRGDFPEEILRVILESPAVQSSWAACWTARNGDGEAIAVDPKVSREVF 363
            EW+ FVD +K +S   A+  + EL  +V EV RRN+   G GLLF TK F EF    E GY+HILS+PFLLGAY    P ++LRV+ E+  ++ +WA C    +G       D KV+ EVF
Sbjct:  170 EWVSFVDLNKSASEGAAVEKDKELEHLVGEVKRRNDEINGAGLLFATKAFFEFTYASEIGYFHILSKPFLLGAYLVGLPGDMLRVVSEATEIRDAWAECCPPSSGSVN-FEWDSKVAHEVF 289          
BLAST of mRNA_P-littoralis_Contig174.16.1 vs. uniprot
Match: A0A6H5K9K2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9K2_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 3.130e-9
Identity = 42/132 (31.82%), Postives = 62/132 (46.97%), Query Frame = 1
Query:    1 EWMWFVDRHKYSSAQDAIRCEGELTDVVREVDRRNEPKGGTGLLFPTKVFLEFVLTLESGYYHILSQPFLLGAYRGDFPEEILRVILESPAVQSSWAACWTARNGDGEAIAVDPKVSREVFEFVPRKYQNCR 396
            EW + V  +   S+  AI  +  L D+V EVD RN+P  G GLLFPT  +              LS+         D P EILRVI ES  V+ +W  C  +           P++  ++++FV +K+ + R
Sbjct:  182 EWDFIVQHNHSPSSAGAIERDPILKDMVGEVDARNDPAAGAGLLFPTLAWY-------------LSR---------DLPAEILRVITESSEVRRAWGKCCPSAVAH-PPFEAQPEILDDIYKFVLQKFHSFR 290          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig174.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FVM7_ECTSI2.580e-3551.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K7M3_9PHAE8.540e-3454.31Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KW14_9PHAE6.780e-3139.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5R0_ECTSI4.990e-2545.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K9K2_9PHAE3.130e-931.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig174contigP-littoralis_Contig174:69350..69853 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size505
Hectar predicted targeting categoryother localisation
Exons1
Cds size498
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789836.4297795-UTR-P-littoralis_Contig174:69349..693551680789836.4297795-UTR-P-littoralis_Contig174:69349..69355Pylaiella littoralis U1_48UTRP-littoralis_Contig174 69350..69355 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789836.440244-CDS-P-littoralis_Contig174:69355..698531680789836.440244-CDS-P-littoralis_Contig174:69355..69853Pylaiella littoralis U1_48CDSP-littoralis_Contig174 69356..69853 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig174.16.1prot_P-littoralis_Contig174.16.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig174 69356..69853 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig174.16.1

>prot_P-littoralis_Contig174.16.1 ID=prot_P-littoralis_Contig174.16.1|Name=mRNA_P-littoralis_Contig174.16.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=166bp
MWFVDRHKYSSAQDAIRCEGELTDVVREVDRRNEPKGGTGLLFPTKVFLE
FVLTLESGYYHILSQPFLLGAYRGDFPEEILRVILESPAVQSSWAACWTA
RNGDGEAIAVDPKVSREVFEFVPRKYQNCRMEDWTRRVSRMTSMSKAQAS
VALRTELKVTSDKAGG
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mRNA from alignment at P-littoralis_Contig174:69350..69853+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig174.16.1 ID=mRNA_P-littoralis_Contig174.16.1|Name=mRNA_P-littoralis_Contig174.16.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=504bp|location=Sequence derived from alignment at P-littoralis_Contig174:69350..69853+ (Pylaiella littoralis U1_48)
GAATGGATGTGGTTCGTGGATCGCCACAAGTACTCGTCCGCGCAGGACGC CATACGGTGCGAGGGAGAACTGACCGATGTCGTGCGTGAGGTAGATCGGA GGAACGAACCAAAGGGGGGTACGGGACTGTTGTTTCCCACTAAAGTGTTC CTCGAATTCGTTTTGACGCTCGAGTCTGGGTACTACCACATCCTGTCACA GCCATTTCTTTTGGGCGCGTATCGCGGCGACTTTCCGGAGGAGATTTTGC GGGTGATACTAGAATCACCTGCAGTTCAAAGTAGTTGGGCAGCTTGCTGG ACGGCTCGTAACGGGGACGGAGAAGCCATCGCTGTTGATCCCAAAGTGTC ACGTGAAGTGTTCGAATTCGTGCCTCGTAAATACCAGAATTGCCGTATGG AAGACTGGACCCGGCGTGTTAGTCGTATGACCTCCATGAGCAAAGCGCAG GCATCGGTTGCGCTGCGCACGGAACTTAAGGTTACGAGTGACAAGGCGGG CGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig174:69350..69853+

>mRNA_P-littoralis_Contig174.16.1 ID=mRNA_P-littoralis_Contig174.16.1|Name=mRNA_P-littoralis_Contig174.16.1|organism=Pylaiella littoralis U1_48|type=CDS|length=498bp|location=Sequence derived from alignment at P-littoralis_Contig174:69350..69853+ (Pylaiella littoralis U1_48)
ATGTGGTTCGTGGATCGCCACAAGTACTCGTCCGCGCAGGACGCCATACG
GTGCGAGGGAGAACTGACCGATGTCGTGCGTGAGGTAGATCGGAGGAACG
AACCAAAGGGGGGTACGGGACTGTTGTTTCCCACTAAAGTGTTCCTCGAA
TTCGTTTTGACGCTCGAGTCTGGGTACTACCACATCCTGTCACAGCCATT
TCTTTTGGGCGCGTATCGCGGCGACTTTCCGGAGGAGATTTTGCGGGTGA
TACTAGAATCACCTGCAGTTCAAAGTAGTTGGGCAGCTTGCTGGACGGCT
CGTAACGGGGACGGAGAAGCCATCGCTGTTGATCCCAAAGTGTCACGTGA
AGTGTTCGAATTCGTGCCTCGTAAATACCAGAATTGCCGTATGGAAGACT
GGACCCGGCGTGTTAGTCGTATGACCTCCATGAGCAAAGCGCAGGCATCG
GTTGCGCTGCGCACGGAACTTAAGGTTACGAGTGACAAGGCGGGCGGG
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