mRNA_P-littoralis_Contig174.68.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig174.68.2
Unique NamemRNA_P-littoralis_Contig174.68.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig174.68.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig174contigP-littoralis_Contig174:268984..272137 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size545
Hectar predicted targeting categoryother localisation
Exons4
Cds size417
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig174.68.2prot_P-littoralis_Contig174.68.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig174 269037..271535 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789835.17925-UTR-P-littoralis_Contig174:268983..2690361680789835.17925-UTR-P-littoralis_Contig174:268983..269036Pylaiella littoralis U1_48UTRP-littoralis_Contig174 268984..269036 +
1680789835.22773-UTR-P-littoralis_Contig174:271535..2715511680789835.22773-UTR-P-littoralis_Contig174:271535..271551Pylaiella littoralis U1_48UTRP-littoralis_Contig174 271536..271551 +
1680789835.2376878-UTR-P-littoralis_Contig174:272078..2721371680789835.2376878-UTR-P-littoralis_Contig174:272078..272137Pylaiella littoralis U1_48UTRP-littoralis_Contig174 272079..272137 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789835.1886787-CDS-P-littoralis_Contig174:269036..2691261680789835.1886787-CDS-P-littoralis_Contig174:269036..269126Pylaiella littoralis U1_48CDSP-littoralis_Contig174 269037..269126 +
1680789835.2035496-CDS-P-littoralis_Contig174:270931..2711181680789835.2035496-CDS-P-littoralis_Contig174:270931..271118Pylaiella littoralis U1_48CDSP-littoralis_Contig174 270932..271118 +
1680789835.2169707-CDS-P-littoralis_Contig174:271395..2715351680789835.2169707-CDS-P-littoralis_Contig174:271395..271535Pylaiella littoralis U1_48CDSP-littoralis_Contig174 271396..271535 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig174.68.2

>prot_P-littoralis_Contig174.68.2 ID=prot_P-littoralis_Contig174.68.2|Name=mRNA_P-littoralis_Contig174.68.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=139bp
MKSILSVQNAWNKSLIHDVLVRMSAASSLSTCTQSSNHEEHAHAKLPFLR
GAVAEQCSQCRHEGEPSAGGPAEPSVVVCQHRGNDEPCPRPDDNKQHGRL
NQRQMEQVALPRQAQWTDRRGAAKDYPAVALGRGWRPT*
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mRNA from alignment at P-littoralis_Contig174:268984..272137+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig174.68.2 ID=mRNA_P-littoralis_Contig174.68.2|Name=mRNA_P-littoralis_Contig174.68.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=3154bp|location=Sequence derived from alignment at P-littoralis_Contig174:268984..272137+ (Pylaiella littoralis U1_48)
AGGCCGCTTTCCAAGAATCCTCTGTCTCAGGCGACAAGCCCGCTGAGGCT
TTCATGAAGAGCATTCTTTCCGTCCAGAACGCGTGGAATAAGAGCCTCAT
CCACGATGTATTGGTTCGGATGTCCGCAGCATCCAGTCTGAGCGTGAGTT
TTTTGTCTGAATGAGATTTGTTCTCTAGATATGACGAGTGCCTGCTACAG
CAGCATCACCATCTTCGTATATCAGACACATTGAGCTTTGAAGGTGTACA
TAACCCTTCTCCACGGCTTCGGTTGCATTATGTCTCTTTGTGTAAGTTGG
TGACAGCTGTCGATCTCCGTACGAGGCGCAGAAGTAATCAACTCGTAAAA
ATTGTCTTGTTCAGCAACACATGAATACCGGTAGTCAAAATCCCGCGTCG
AGGTATCGAGTTTTCATCTTTAATTCATGATTTGACGGCGCGTTTGCCAC
CTGTTTTACCTCGTAGCACTACGTAGCATCTCCACAAAGAGTCCAGAAAC
ACGAACATGAACACTTGATGCGTATGTCATTGGTAGCTGTTGTACTTGGA
AGTACATGCTTATGCTGTCATTTACTCCGTTCGTGACTTCTGTGACATCG
GCGCAAGAGGGCGCGCTGTGGTGTAGTGCAATACCCGTTTCCTACACAAC
CAAACCCGACATGCTTCCCCTTCTTGTCACTATACGGGTGTGTTGGTCAG
TTGTTGCCTTTTTATACTACATGGTTCAGTACAAGTATATTTCTTTCGGT
TAGTTGGTATCAAAGCAGATGCACCCCTTCCCCCCCTCCTTCCCTGAAAT
ACGAGATGTATTGCCGGTGGTGTTTTTTTGGTGGACGTGTCCGATGAAAA
AAGAATAGGTCGTCCGAGCCAGACGTCCATTTGTACTTTCGCCAGATAGT
TTCCAACACGAACCACCGGCAGGAAATCGCTAAGGCCAATACCCACACCC
ACCAACGTTGCGCGAAAAACGTATTGTACTCTACGATAGGTACACGATCG
TGTTTGGTGTCCCATGGACTTGGGTACGGCTTGGCGCTGTCTTCTGTTGT
GCTACAAACCTAGCCGTTCAGGCTCTCGGGGTTTCACATTGGGGGGGGGT
ACCCCTATTCCCCCTGTACGCCGCCGCGTCCCACTGCTGATGACCCCCCC
GGGGTTCGCCCTGCTCAACTACCGTACACGACGCAGATTGTAGACTCGGA
AGCGTTGCAGACCCCAAAAAAACCGAGGACGTCCGGAGGTTTTGTGTCTG
CGAAGAGCGCGGCGTTCCACAAAACGCTGTTCTTCGTCGAGAGGTTCCAC
CTGTGCAATCACAGGACATGTGTCCAACATCCTGACGTGTTGGTGAATGC
TTTGCTGTTCCCGGACATGCTGTTGAAGCCCCGGTGGCTCCGACCTTTTT
GGCGTAAGACCCTCCCCGCTGCATTTCAGACACCCGTGGTGGTCGTCTTC
CCCAAAAAGCTCCGATCGCCCCCCAAAATGCCTTGAAGAATATTACGTCT
GACGGCTCGGATACCTGCTGGACTCAACTTGAGTTACAACCAATACATCG
CGCCATTAACTACGGCGTCGAAGTTTTTTGTGGTGCGATACTCCCGTGCG
CACCTTGCACTCGGTCGATTGTTTTCAAATTTGGCATTGTGAATTTCACC
ATAGCGAGAACAGAAGTGATGGTCACGTAAATGCCCTCGATGTTTAGGGG
ACACTCGTTTACATGTATGGTGTTATCCCGTCGTTACAGTCGGCAGGGAG
ATTGTCGCCGTTGCTGGAAAGTAAATGCCGATAGCAGGAAATTTCCTGCT
GTATTTCACACATGAACCAAGTTTGACCTTTTTCTGCTCGTACTGGAGTT
AGTGTCAGCAGAGTGTTTGGCTGCAATCGAATTGTAATTTTCCCCACCCG
CCCCACGTATTGTTGCAAACCGTTTCCCCTGTATCCTATTCATGGCAGAC
ATGCACGCAAAGTTCGAACCATGAAGAGCACGCTCATGCGAAACTTCCGT
TTCTACGTGGCGCGGTGGCTGAGCAATGTTCTCAATGCCGTCACGAGGGC
GAACCCAGCGCAGGAGGGCCAGCCGAACCCAGCGTTGTCGTCTGCCAACA
TCGTGGAAACGATGAGCCATGCCCTCGACCAGACGGTACGTGCTTGTTTA
CCATTTAGCTGTGTCTGCGGGTCGACTGGCAGCGTACCCTTTTCGGGTGT
TACTGGTCGTTGGACGGCAACATCACCAGTGTACTCCTGGTGTAATTCTC
TTCAACTGCTAGAATTAAGCCCAGATGCACGCCTAAGTTGAAACGTTGAC
CGGTCAATACAACGTCCTGCCGCATGCCATCAACCTCACGGGCTACTGTT
GCTTTGTATTGTCGCTGCCGCCCCCCCTGCGTCGTCTGGCGTCACTTTTT
TTACGTATGCAGACAACAAGCAACATGGTCGCCTTAACCAACGACAAATG
GAGCAAGTCGCTCTCCCCCGCCAAGCACAGTGGACCGATCGGCGGGGGGC
AGCCAAAGATTACCCTGCAGTTGCATTAGGTCGTGGGTGGCGCCCCACAT
GAAATGCTCTATTTCCAGGTGAGTACTTAATCGGTGTGAGTGTGGTCCAT
GTACTTACACCGATGATAACGGTGCTCCCCCCCTCCCCCCTCCATTGATA
CCAAGCTTCGGCGAAAGGTCGGGACGGAAAAACGTGGTCGGCACGGCGCG
GGTTCCCGTACCGTATTTTATCCTCATAATAAAACTACATTTCTGGTTGT
TTTATGATCCCACATCAACCGTTCCGCCGCTAAAAACAAGACTCTCGTCC
CACCATCAGCCAAATCGCTTCCAGCGTAATGAGATTTGGCACACCTCCGC
CTATTCCCGTCAAATATAGCCCATCTATTGTCGTGTTTTGTGTTCAAAAC
GTAATATTTTTTCGGGCCTCTTGCATGATAATTTTTTGAACAAACCTTTT
TGGAGCGCTTTCTTCACACCAAAAAAAATGCCCGGAATCACTCGCAATTC
GTTCACGCTTTTCTACGTCCAGATCTGTTCAGTCATACCCTACTCTCCCT
TCTTCTCCCACTCCATTCCTCGCTCTACTGTGCCCATCCTTCAAGGTCAT
CCGGATGACACTTAAGACCATCCTGGAGGAGCTGTCTGCGCTCTTACTCA
AGGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig174:268984..272137+

>mRNA_P-littoralis_Contig174.68.2 ID=mRNA_P-littoralis_Contig174.68.2|Name=mRNA_P-littoralis_Contig174.68.2|organism=Pylaiella littoralis U1_48|type=CDS|length=417bp|location=Sequence derived from alignment at P-littoralis_Contig174:268984..272137+ (Pylaiella littoralis U1_48)
ATGAAGAGCATTCTTTCCGTCCAGAACGCGTGGAATAAGAGCCTCATCCA
CGATGTATTGGTTCGGATGTCCGCAGCATCCAGTCTGAGCACATGCACGC
AAAGTTCGAACCATGAAGAGCACGCTCATGCGAAACTTCCGTTTCTACGT
GGCGCGGTGGCTGAGCAATGTTCTCAATGCCGTCACGAGGGCGAACCCAG
CGCAGGAGGGCCAGCCGAACCCAGCGTTGTCGTCTGCCAACATCGTGGAA
ACGATGAGCCATGCCCTCGACCAGACGACAACAAGCAACATGGTCGCCTT
AACCAACGACAAATGGAGCAAGTCGCTCTCCCCCGCCAAGCACAGTGGAC
CGATCGGCGGGGGGCAGCCAAAGATTACCCTGCAGTTGCATTAGGTCGTG
GGTGGCGCCCCACATGA
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