mRNA_P-littoralis_Contig174.13.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig174.13.1
Unique NamemRNA_P-littoralis_Contig174.13.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig174.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig174contigP-littoralis_Contig174:65315..67468 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size182
Hectar predicted targeting categoryother localisation
Exons2
Cds size180
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789835.1340454-CDS-P-littoralis_Contig174:65314..653951680789835.1340454-CDS-P-littoralis_Contig174:65314..65395Pylaiella littoralis U1_48CDSP-littoralis_Contig174 65315..65395 +
1680789835.1466916-CDS-P-littoralis_Contig174:67369..674681680789835.1466916-CDS-P-littoralis_Contig174:67369..67468Pylaiella littoralis U1_48CDSP-littoralis_Contig174 67370..67468 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig174.13.1prot_P-littoralis_Contig174.13.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig174 65315..67468 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig174.13.1

>prot_P-littoralis_Contig174.13.1 ID=prot_P-littoralis_Contig174.13.1|Name=mRNA_P-littoralis_Contig174.13.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=60bp
AEAKPLGSPEHCTSGASSPRFSDGRFATWRRKMCETPPKPERLRLKTCRL
FRRDGCSPR*
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mRNA from alignment at P-littoralis_Contig174:65315..67468+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig174.13.1 ID=mRNA_P-littoralis_Contig174.13.1|Name=mRNA_P-littoralis_Contig174.13.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2154bp|location=Sequence derived from alignment at P-littoralis_Contig174:65315..67468+ (Pylaiella littoralis U1_48)
GCGGAGGCGAAACCTCTTGGGTCACCTGAGCATTGCACCAGTGGAGCCTC
GAGTCCAAGGTTCAGCGACGGAAGGTTCGCGGTGAGTGCAAAAATCGTAT
TTTCTAGGGTCTCACAAGCGGCCCCTTCTGACCCCGGCTTCCGACTACCC
TCTCTAGCACGACAGCGTGCTCCTTCCACAGCGGTGGCAAGTGTAGGCTC
GCCCATCCCAGCCGTTCGCCATACTCATGATCTACTCTCGGGAGCAATCC
GCGTGGGAAACGATCGTGTGTGGGCGAAGATATCAACACATACATGGGCA
CATGTCATATTCGGTTAGGGTTGCGCCGCACCAACAGGCGCACGCGGTGC
TGTTTTTTGGTTTTCGCTTGTATTTTTTTTCGAAAATATGTGCGACCTGG
AGGAAGGCCCTGATGGGTGAAATGCTACTATTAATGTACTATGGAGTATG
ACTACAAAAATAGCTATAAACTCGCTACAAGTTACGACATATAGTCATAC
TCCATAGGTGCCACTATGTCCCCTCTTGTGCCATCTTGTGCGTAAGAGTG
GGGGTAGTTGTGAGTGTAGGACCCCGTCGTGCATGCTGGGATTTTTCACT
TTAGGGCGGGCCTTCTATATTTTCTCGTGTATAGCACTGCTGCACTAGTC
TAGTCTTGCTGCGGCAGTTCAGCATCAGAAATTGCCCGTCCGTAGGTAGT
CGTGCCCTCAAAGTTTGCCAATTTTTTTCGTGGGTCCAAATCTCGCAGCA
GTACAGGACGTAAGGCGGTTTCTTGTAGGGCCGGATTTTTTTTTCATTTT
TTGATAGAATCCGAACGAACTTTTTCCGGCCAACGGTTGCCGATCCGCTG
TTCTTATAGGTAAATAGGTTTTCGGATTTTCGGTGATCCCTTTTTTTGAG
TATGTGGTTGAAGAGTCGGCTCCAGAGTGTATCTGCATCGAAGGACCGCA
GGATGGTGTTTTTTGCGCTGAAACCCGTTTGCATCCCCGCTCGTAACTTT
CGAACGAATGAAGACACAGCAATGACGAAGGCATCTTCCGTGAGCTGTGT
ATATGATCCCCCTCGTGTCGTGATCGCTTGGGTTAGGGTTACATCCGTAC
ATTCGCAACGTAGGTTTGCTCATGGCCAACTCATGCGAAACAAATTGAGA
AAGATGTATCAGCCGGACTGCTGTACAGCAGCATTATTATATACTGCTGT
ATGTATGGCAGTTGTACAGCAGTAGAGAAATGAGATGACAGCTCGGGTTC
TTTTTTACAACACAACAACATGCCACAGCCACGAGCGATGACCATTTTGC
GAACATGCCAGTGTAATCCTCACCCAAACGATTACCACACGAGGGGAGCC
ATACGCACAGCTCACGGGAGATGGGCTTGTCATCGCTGTGGCTTCATTCA
TTGGGGAGTTACGAGCGAAGATGCAACTTGTGGTCTCTCTCAGAGGAAGC
TTTGATACTCCTCCTCCTGCTGCTGCTGCTGTGCTGATGATGCTGCTGCT
ACATACGGTTGGTTTTGGTTGCTGATGAAAACGATGGAATGAACGATGAC
ACGGCAAACGCACGCAGAAAGACGGTGGACACATGTTATGTATGGACAGC
AGCAAGCAGTAGTAGCAGCAGCAGCAGGAGCAGCAGCTGCAACAACACAG
AAAGTAGTAGCAGAGCTCTCCTCCTCTGATGCTCTGTTGTGATTAATATC
GTTTGTTTTGTCCACACACAAAGAGAGAGATAACTTCACACATTTTTTTT
TATATATTTTCCGATCGTATTTTCCGAACCGATCCAGCGTTCGGAAAATG
TCCGATTTTCCGAACGTAATCCGATTAAAAGCTGTTCGGAAAATTTTGTT
CGGAAAATGTTGTTCGGAAAAGGTGTTTTCTGAGCCTATAAGAAGCCTTG
ACTCTAAAAAAATTCGGAATCTATCAAAAAATGAATAAAATATCCGGCCC
TACAAGAAACCGCCCAAGCCCTGAAAAGACTGGCGTGGTATTGCTTCATC
ACGAAGGTATACTCATTCATGCCTAAATATGTACGTCGAACGTTAGGTTG
TTCAGACATGGAGACGGAAGATGTGCGAGACGCCGCCGAAGCCGGAGCGG
CTGCGGTTGAAGACATGTCGCCTGTTCCGGCGAGACGGATGTTCGCCGAG
GTAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig174:65315..67468+

>mRNA_P-littoralis_Contig174.13.1 ID=mRNA_P-littoralis_Contig174.13.1|Name=mRNA_P-littoralis_Contig174.13.1|organism=Pylaiella littoralis U1_48|type=CDS|length=180bp|location=Sequence derived from alignment at P-littoralis_Contig174:65315..67468+ (Pylaiella littoralis U1_48)
GCGGAGGCGAAACCTCTTGGGTCACCTGAGCATTGCACCAGTGGAGCCTC
GAGTCCAAGGTTCAGCGACGGAAGGTTCGCGACATGGAGACGGAAGATGT
GCGAGACGCCGCCGAAGCCGGAGCGGCTGCGGTTGAAGACATGTCGCCTG
TTCCGGCGAGACGGATGTTCGCCGAGGTAA
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