prot_P-littoralis_Contig173.49.2 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig173.49.2
Unique Nameprot_P-littoralis_Contig173.49.2
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length978
Homology
BLAST of mRNA_P-littoralis_Contig173.49.2 vs. uniprot
Match: D8LFW8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFW8_ECTSI)

HSP 1 Score: 577 bits (1487), Expect = 2.330e-188
Identity = 518/981 (52.80%), Postives = 604/981 (61.57%), Query Frame = 0
Query:   29 MWGSGSQSPLPFG-SQSDGGLFG--FSQESGDGAFGSVGGGFGXGSQSQTQATQSFELSQSQYGLSQA-SQL-SQPAVPECTECKSTEMHTTEDGDMVCSVCGTAFEGNVNEVVEMEEGMLVGITRRRVKRDKTPAGPKLDSKGRRVAFADTRHCLRAFQIILIEHVKAFCSAAALSEDATKEMRRVSSGLWFSYLERYTLPEACGHGGIRVREDFRSTQEREESKARLAQEESGRAGDRHDSDGXXXXXXXXXXXXXXXXXXXXRGVRSMGPVNVDEGELAAYGRRSKDWSRIVQAARSNPGYSLPPITMSLVPAMLCVCARWLRAPVLAVDVVRWITDGSLPYIGSIELLPQELKEGIGKARAFFSPSVVPLAVSVATLADRLSAVLGLEGCPDWDKWSFARPALLPPPGIAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAIGXXXXXXXXXRDNGQRRPSLVPSPSSGRRTSDSWTATQL----------------LRAKSPLGVAGLGGTAFGSKSRASSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGLPPFVPTHPDELRLLLRGRLPQYLSYVERWPGGEGRFGNWLGDADATPVALESVAKEVKAGTAPLASPKRKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLMGRVRVAQVAAGGS-FDGH-LAXXXXXXXXXXXXXXXXXXXXXXGGERGDRQSKAKVE---HRARARGRLALRRTKAFVGERLGPTVVYDPTDEIGRFHPQYELLVEACAFYLEVRPAVLHDKVRELDAILIEQAYRVLRREEAPTGYRVWEGVEKDERDRRRALARAEAEGRRIDGRRLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHN----KVHLFNERRRVFLRVPVSHS---LSPRGMLNAIDRRGVFGRESDPSIERRVMPVVLDHPRKDK 976
            MWGSGSQSPL F  SQ  GGL+G  +SQ SG G              SQ+Q TQ F+LSQS +G SQ+ SQ+ SQPA PECTEC STEM TT+DGDMVC+ CGTA+EGNVNEVVEME  ML+GI RRR+KRDKTP GP+LD+KGR V+FADTR+CLRAFQII + HVKAFCSAAALS DAT EMRRVSS +WFSYLER+TLPEACG+GGIRVR+DFR+  ++ E KAR A+E  G  G   D+ G                       R+MGPVNVDE E+ AY RR+ DW R V  AR+NPGYSL                                            LLP +L  G+GKAR FF+P+ +P +V VATLADRL+AVLGLEG PDW+ W++ RPALLP        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   XXXXXX         R       S+ RRTSDSW A QL                              + FG + R  S                                            PPFVPTH +ELRLLLRGRLP+YL +VERW GGEG+FG+WLG+A   PVALES+A+E++A     A    +         XXXXXXXXXXXXXXXXXXXXXX  MG VR AQVAA GS  +GH LA XXXXXXXXXXXXXXXXXXXXX      R  K K+    +R R + R+++R  + +   RLGPTVVYDP+D I RFHP+YELL+EA +FYL+VRP +LHDKV ELD+ILIEQA R LRR+EAPTG++VWEG+EKDER             R    +R +                   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      +  +  E RR  + V +S     +  RGM NAI R+GVFGRE+D SI+RRVMPV LD PR+ +
Sbjct:    1 MWGSGSQSPLGFSQSQGGGGLYGGAYSQASGFG--------------SQSQQTQPFDLSQSVFGASQSQSQVGSQPAAPECTECHSTEMFTTDDGDMVCATCGTAYEGNVNEVVEMENNMLIGINRRRIKRDKTPVGPRLDAKGRIVSFADTRYCLRAFQIIFLRHVKAFCSAAALSRDATAEMRRVSSDVWFSYLERFTLPEACGNGGIRVRDDFRTGLDKGEIKARFAKETGG-GGSGVDAGGVEGEGHDSGTGNEGGGGWR---ARAMGPVNVDEREMEAYFRRTGDWQRTVGTARANPGYSL--------------------------------------------LLPPDLNAGLGKARTFFAPNKIPSSVIVATLADRLAAVLGLEGRPDWESWTYTRPALLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNFGAGGMGTR-------SAARRTSDSWIAPQLRLXXXXXXXXXXXXXXXXXXXXXXXXXXSTSLFGLRGRRQSLPASLTGRGDTRGVREEVGLEQPPASGGDGGSGVFG--------PPFVPTHREELRLLLRGRLPEYLGHVERWLGGEGKFGDWLGNAHVLPVALESLAEEIEARRR--ADTHAEGVRGPAAAAXXXXXXXXXXXXXXXXXXXXXXXXMGCVRAAQVAASGSSLEGHHLAAXXXXXXXXXXXXXXXXXXXXXXXXXXKRTKKTKIRMPMNRERIKSRVSVRSARTYDPSRLGPTVVYDPSDRISRFHPRYELLIEAGSFYLQVRPDLLHDKVEELDSILIEQAKRSLRRQEAPTGFKVWEGLEKDERRXXXXXXXXXXXARERHAQRWMGNVSRKRRRQLVREMAKREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAAPRGGIGTEERRSIMGVSISERQDRIEERGMRNAISRKGVFGRETDWSIDRRVMPVRLDRPRRSE 902          
BLAST of mRNA_P-littoralis_Contig173.49.2 vs. uniprot
Match: A0A6H5JNI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNI1_9PHAE)

HSP 1 Score: 192 bits (488), Expect = 4.090e-53
Identity = 110/168 (65.48%), Postives = 128/168 (76.19%), Query Frame = 0
Query:   29 MWGSGSQSPLPFG-SQSDGGLFG--FSQESGDGAFGSVGGGFGXGSQSQTQATQSFELSQSQYGLSQA-SQL-SQPAVPECTECKSTEMHTTEDGDMVCSVCGTAFEGNVNEVVEMEEGMLVGITRRRVKRDKTPAGPKLDSKGRRVAFADTRHCLRAFQIILIEHVK 191
            MWGSGSQSPL F  SQ  GGL+G  +SQ SG G              SQ+Q TQ F+LSQS +G SQ+ SQ+ SQPA PECTEC STEM TT+DGDMVC+ CGTA+EGNVNEVVEME  ML+GI RRR++RDKTP GP+LD+KGR V+FADTR+CLRAFQII + HVK
Sbjct:    1 MWGSGSQSPLGFSQSQGGGGLYGGAYSQASGFG--------------SQSQQTQPFDLSQSVFGASQSQSQVGSQPAAPECTECHSTEMLTTDDGDMVCATCGTAYEGNVNEVVEMENNMLIGINRRRIRRDKTPVGPRLDAKGRIVSFADTRYCLRAFQIIFLRHVK 154          
BLAST of mRNA_P-littoralis_Contig173.49.2 vs. uniprot
Match: A0A6H5JTM5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTM5_9PHAE)

HSP 1 Score: 202 bits (513), Expect = 3.920e-52
Identity = 220/470 (46.81%), Postives = 260/470 (55.32%), Query Frame = 0
Query:  411 VLGLEGCPDWDKWSFARPALLPPPGIAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAIGXXXXXXXXXRDNGQRRPSLVPSPSSGRRTSDSWTATQLLRAKSPLGVAGLGGTAFGSKSRASSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGL--PPFVPTHPDELRLLLRGRLPQYLSYVERWPGGEGRFGNWLGDADATPVALESVAKEVKA------------GTAPLASPKRKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLMGRVRVAQVAAG-GSFDGHL----AXXXXXXXXXXXXXXXXXXXXXXGGERGDRQSKAKVEHRARARGRLALRRTKAFVGERLGPTVVYDPTDEIGRFHPQYELLVEACAFYLEVRPAVLHDK---------VRELDAILIEQAYRVLRREEAPTGYRVWEGVEKDERDRRRALARAEAEGR 852
            V   +G PDW+ W++ RPALLPPPG+A +                       XXXXXXXXX   XXX         G R        S+ RRTSDSW A QL R +S  G +              +                                          G+  PPFVP H +ELRLLLR RLP+YL YVE W GGEG+FG+WLG+A   PVALES+A+E++A            G A  A      XXXXXXXXXXXXXXXXXXXXXXXXXXXX  VLMG VR AQVAA   S +GH     A     XXXXXXXXXXXXXXXXX              +R R + R+++R  + +   RLGPTVVYDP+D I RFHP+YELL+EA +FYL+VRP + HD+         V ELDAILIEQA R LRR+EAPTG++VWEG+EKD+R RRRA AR E E R
Sbjct:    5 VAAAKGRPDWESWTYTRPALLPPPGVATSCPAAAAEGKRGGEPSSVAVMADHXXXXXXXXXXXXXXXNYGAGG--TGMR--------SAARRTSDSWIAPQL-RLRSRGGNSPDAAAPXXXXXXXXTSLVGLRGRRQSLPAGLTGRGDRRGAREEEGLEPPASGGDGGSGVFGPPFVPMHREELRLLLRWRLPEYLGYVEGWLGGEGKFGDWLGNAHVLPVALESLAEEIEARRRADTCAEGVRGPA-AAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVVLMGCVRAAQVAASCSSLEGHHPAAGACADDRXXXXXXXXXXXXXXXXXXXXXXXXXXXXMPMNRERIKSRVSVRSARTYDPSRLGPTVVYDPSDRISRFHPRYELLIEAGSFYLQVRPDLRHDEXXXXXXXXXVEELDAILIEQAKRSLRRQEAPTGFKVWEGLEKDDRRRRRARARKELEAR 462          
BLAST of mRNA_P-littoralis_Contig173.49.2 vs. uniprot
Match: UPI0001CBB4DA (TATA box-binding protein-associated factor RNA polymerase I subunit B-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0001CBB4DA)

HSP 1 Score: 62.0 bits (149), Expect = 5.140e-6
Identity = 31/87 (35.63%), Postives = 51/87 (58.62%), Query Frame = 0
Query:  332 ITMSLVPAMLCVCARWLRAPVLAVDVVRWITDGSLPYIGSIELLPQELKEGIGKARAFFSPSVVPLAVSVATLADRLSAVLGLEGCP 418
            ++M L    + +   WLR PVL  D++RWI  G LPYIG+ ++LP+ +K      + F S  V+P ++++     RLS+ LG++  P
Sbjct:  250 MSMDLTVCFIYLALLWLREPVLLCDLLRWIRQGHLPYIGANKILPKHMKFSFFDNKTFCS-QVIPSSMTIRYKVGRLSSFLGIDTFP 335          
BLAST of mRNA_P-littoralis_Contig173.49.2 vs. uniprot
Match: A0A4P9Y551_9FUNG (Uncharacterized protein n=1 Tax=Piptocephalis cylindrospora TaxID=1907219 RepID=A0A4P9Y551_9FUNG)

HSP 1 Score: 58.5 bits (140), Expect = 5.840e-5
Identity = 24/44 (54.55%), Postives = 32/44 (72.73%), Query Frame = 0
Query:  340 MLCVCARWLRAPVLAVDVVRWITDGSLPYIGSIELLPQELKEGI 383
            +L +  RWLR PVLAVD++RW T+GSLPY+ +   LP  L EG+
Sbjct:  294 VLLLACRWLRCPVLAVDILRWATEGSLPYLDAYTYLPSSLMEGM 337          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig173.49.2 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LFW8_ECTSI2.330e-18852.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JNI1_9PHAE4.090e-5365.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTM5_9PHAE3.920e-5246.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI0001CBB4DA5.140e-635.63TATA box-binding protein-associated factor RNA pol... [more]
A0A4P9Y551_9FUNG5.840e-554.55Uncharacterized protein n=1 Tax=Piptocephalis cyli... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..55
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 887..911
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 491..511
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 708..739
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 238..295
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 14..50
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 562..587
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 238..266
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 451..511
NoneNo IPR availablePANTHERPTHR31576:SF2TATA BOX-BINDING PROTEIN-ASSOCIATED FACTOR RNA POLYMERASE I SUBUNIT Bcoord: 102..408
IPR033599RNA polymerase I transcription initiation factor TAF1B/Rrn7PANTHERPTHR31576TATA BOX-BINDING PROTEIN-ASSOCIATED FACTOR RNA POLYMERASE I SUBUNIT Bcoord: 102..408

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig173contigP-littoralis_Contig173:160576..176849 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig173.49.2mRNA_P-littoralis_Contig173.49.2Pylaiella littoralis U1_48mRNAP-littoralis_Contig173 160576..176849 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig173.49.2 ID=prot_P-littoralis_Contig173.49.2|Name=mRNA_P-littoralis_Contig173.49.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=978bp
GVDQLPSATDCGCGPDVETSSNGQPNNKMWGSGSQSPLPFGSQSDGGLFG
FSQESGDGAFGSVGGGFGFGSQSQTQATQSFELSQSQYGLSQASQLSQPA
VPECTECKSTEMHTTEDGDMVCSVCGTAFEGNVNEVVEMEEGMLVGITRR
RVKRDKTPAGPKLDSKGRRVAFADTRHCLRAFQIILIEHVKAFCSAAALS
EDATKEMRRVSSGLWFSYLERYTLPEACGHGGIRVREDFRSTQEREESKA
RLAQEESGRAGDRHDSDGGGAAGGGDGGGGGGGGGGGGRGVRSMGPVNVD
EGELAAYGRRSKDWSRIVQAARSNPGYSLPPITMSLVPAMLCVCARWLRA
PVLAVDVVRWITDGSLPYIGSIELLPQELKEGIGKARAFFSPSVVPLAVS
VATLADRLSAVLGLEGCPDWDKWSFARPALLPPPGIAAAAAAAAAPAAEA
SAVDKAGDEGSDDVNDDVDDEAIGGGGGVGGGGRDNGQRRPSLVPSPSSG
RRTSDSWTATQLLRAKSPLGVAGLGGTAFGSKSRASSGAAVAAAAAAGSL
VAGGRSGGGGGGGGGTLNGGGGGGGGGGPGLPPFVPTHPDELRLLLRGRL
PQYLSYVERWPGGEGRFGNWLGDADATPVALESVAKEVKAGTAPLASPKR
KRRSTLVAAAVPRVAAVVVVVGMGGGAVEDEEVLMGRVRVAQVAAGGSFD
GHLAAAAAAADDDDDDDDGDYSGGGSGGERGDRQSKAKVEHRARARGRLA
LRRTKAFVGERLGPTVVYDPTDEIGRFHPQYELLVEACAFYLEVRPAVLH
DKVRELDAILIEQAYRVLRREEAPTGYRVWEGVEKDERDRRRALARAEAE
GRRIDGRRLLWWRKEEEEEEEEEGRRTREGTQRWRKGEEEEEEEEEEEED
TRRGGRRRWGGGGGHNKVHLFNERRRVFLRVPVSHSLSPRGMLNAIDRRG
VFGRESDPSIERRVMPVVLDHPRKDKT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR033599TAF1B/Rrn7