mRNA_P-littoralis_Contig172.24.4 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig172.24.4
Unique NamemRNA_P-littoralis_Contig172.24.4
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig172.24.4 vs. uniprot
Match: D7G7H1_ECTSI (SWIM-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7H1_ECTSI)

HSP 1 Score: 160 bits (406), Expect = 1.610e-44
Identity = 119/213 (55.87%), Postives = 132/213 (61.97%), Query Frame = 1 
Query:  106 HVNRVACLDAFLEDFS------FDGSGDAFLHTLAKNAASPTATP-------TGSGNAAVGGVPLAEDG--GSDLRALTSGTSGXXXXXXXXXXXSG-------------GKVCPRGYYSRRLAGAAAAAARPLQAEVLKVLDFLFTSDRPLVEST--VLDKSRVVQLVARGSSRSMWLVQGSRGAPYLCLREYCSCRSFQELVRRGGEHPVL 654
            +VNRVACLDAFL+ FS       D S D    T   NA+S   TP       T SG    G + + E+G  G DLRA+TSG +G    XXXXXXX               G     G    R A A AAAA   QAE+LKVLDFLF SD PLVEST  VLDKSRVV++VAR + RS+WLVQGSRGAPYLCLREYCSCRSFQELVRRG  HPVL
Sbjct:   11 NVNRVACLDAFLQRFSGGAGSGSDSSDDFTPLTTGNNASSTPTTPRTSDRNGTPSGVRNDGALAVGEEGSDGGDLRAMTSGIAGGDRGXXXXXXXXXVDSXXXXXXXXXVGAAGSTGIARGRDATAVAAAA---QAEILKVLDFLFCSDCPLVESTIQVLDKSRVVKVVARNTGRSVWLVQGSRGAPYLCLREYCSCRSFQELVRRGAPHPVL 220
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig172.24.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G7H1_ECTSI1.610e-4455.87SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig172contigP-littoralis_Contig172:103929..109727 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size872
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-02_000250.1
Cds size798
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig172.24.4prot_P-littoralis_Contig172.24.4Pylaiella littoralis U1_48polypeptideP-littoralis_Contig172 104001..109725 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789832.553678-UTR-P-littoralis_Contig172:103928..1040001680789832.553678-UTR-P-littoralis_Contig172:103928..104000Pylaiella littoralis U1_48UTRP-littoralis_Contig172 103929..104000 +
1680789832.6108422-UTR-P-littoralis_Contig172:109725..1097271680789832.6108422-UTR-P-littoralis_Contig172:109725..109727Pylaiella littoralis U1_48UTRP-littoralis_Contig172 109726..109727 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789832.5630312-CDS-P-littoralis_Contig172:104000..1040721680789832.5630312-CDS-P-littoralis_Contig172:104000..104072Pylaiella littoralis U1_48CDSP-littoralis_Contig172 104001..104072 +
1680789832.5714238-CDS-P-littoralis_Contig172:106619..1068661680789832.5714238-CDS-P-littoralis_Contig172:106619..106866Pylaiella littoralis U1_48CDSP-littoralis_Contig172 106620..106866 +
1680789832.5797799-CDS-P-littoralis_Contig172:107434..1075321680789832.5797799-CDS-P-littoralis_Contig172:107434..107532Pylaiella littoralis U1_48CDSP-littoralis_Contig172 107435..107532 +
1680789832.5885608-CDS-P-littoralis_Contig172:108380..1084991680789832.5885608-CDS-P-littoralis_Contig172:108380..108499Pylaiella littoralis U1_48CDSP-littoralis_Contig172 108381..108499 +
1680789832.602089-CDS-P-littoralis_Contig172:109463..1097251680789832.602089-CDS-P-littoralis_Contig172:109463..109725Pylaiella littoralis U1_48CDSP-littoralis_Contig172 109464..109725 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig172.24.4

>prot_P-littoralis_Contig172.24.4 ID=prot_P-littoralis_Contig172.24.4|Name=mRNA_P-littoralis_Contig172.24.4|organism=Pylaiella littoralis U1_48|type=polypeptide|length=266bp
MMELHLHGSGRHVNRVACLDAFLEDFSFDGSGDAFLHTLAKNAASPTATP
TGSGNAAVGGVPLAEDGGSDLRALTSGTSGGGGGGGGRDNRSGGKVCPRG
YYSRRLAGAAAAAARPLQAEVLKVLDFLFTSDRPLVESTVLDKSRVVQLV
ARGSSRSMWLVQGSRGAPYLCLREYCSCRSFQELVRRGGEHPVLVSWPPP
KYMVMPECFNRLLWVNVERNGSTCFVCRVQFNGLLLRFHQHLDTTGAHIV
GPLLFNWCIDKWTPD*
back to top

mRNA from alignment at P-littoralis_Contig172:103929..109727+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig172.24.4 ID=mRNA_P-littoralis_Contig172.24.4|Name=mRNA_P-littoralis_Contig172.24.4|organism=Pylaiella littoralis U1_48|type=mRNA|length=5799bp|location=Sequence derived from alignment at P-littoralis_Contig172:103929..109727+ (Pylaiella littoralis U1_48)
GAGCTCAGAGCAGAGGAGTAGCACGTCGCGATCGCAACCAACGGAGACAG
AGAGAAGATAGAAGCATTAGTGATGATGGAACTCCATCTGCATGGGTCGG
GGCGGCACGTGAACCGAGTGGCTTGTCTCGATGCCTTTCTGGAGGTGGGT
GTCGCACACGTGTTCGCAACCAACAAGTCCTTGGGTCTGATATGTTTTGC
AGTGCTTGAGGTTTCGGAAATACACGGAGCCCCCTGTGCCGATCGGTAGC
CTTGATCTGCTCCTGCCAGGGTATCTAGTGTATTAGTAACCGTGCACCTG
TCGACCCGCGATTTTTTCAACTTTGACCCGAGGTTCTCCTTCAATTTTAC
ACCTCTCGCATATCCCTAACCCTAACCCTAACCCGGACCCTGAGCCGACC
TGAGTCCGCAAGGAGCCTCGGCGCCGCTCCGCGGCGTGTTTGGTTGCAAA
AACACGTTTGGTCGATTCCCCAGAGCAACTTTGATCTAAAGTTTGTTTTT
TTGGGGGGATATTTTCGGAGGTAGACACATGGTCATTGTTGAGGTCAAAA
AAATTCAACCTGGTAACTAATTGAGTTTAGACTCGTTTGGGTCGGTTTTA
GCCAACTTTCATAGGCCCATCGTCAGCGCCGTAGTGTTGATCCCCAATTT
CGCCAACGCTTGTTGGGTAGTGTCCACCAAGCTACACGCCCTTCCAGGTT
TCAGCCAGTCAATTCACCGTTTGGCAATCCTGGCGTGAAGTTTGCCTGCC
GAGACAAAAAAACGAGATCAATGGAGACAACTTTTTTGGAAGACAAGAGC
TTGCTTTCAGTTGCAATGGAGCAGCATTTCTACTGTTTGAAGCAAAACCA
TGGCATATGAACTACTGGGAAAGGTAGAATAAGGCCCTTCCGAGATCTCT
CCTATTGATTTCGTATCCAGCCGCGGTCTGTGCAAGGAGCAACAGCGGTG
ACAAAGGTCACGACCCCGGATGGCACTGGCAGCTCAAATTGAGGCTAATG
GAGGAGGGGCTCCGAGGATGTGTCGGTGCATCGTTGTATACCACTGACAA
ACTTTTGTCGCTATTAAAAAAGAAAAAATGCCAAATCATCACATGTGTAA
AGCCGGGGTCACACGGGGGAGGAAGGTCACACACGAGCTTTTTCATTTTA
ATTTTTAATTTTTATTGCCCATACCTTTCCTCCTGCGGTACATGCCTTCG
GTTTTTCATGCGAGTCTGGTTCAGCGATCCCTTCCGTTTGTGTACTCACG
AGTGAATCGCTTTCCATTGTAAAGTTGCAAGAAAACGCTCTCAGAGAGAA
TCGGACCTGCACCCTTACTGCTAGTAGGTTGACGTGGGAACCACTAGGCC
GCCGCGGCAACCGGCGTCGGTACACGCAGAATATTTGAGATTTCAAAACA
AAAAAGGCTCCGCCGCAGTTGGTTCTCTACAGTAAGAGAATGCGTTGTTC
AGTGTGTAAAACGTGTATGCTGCTGTAGTGCTGACCAGCTGCTGTACTGT
AGCGGCCATGATACACAGCGGGCCGCCGTGTGTGCCGTATTATAATCGCG
CAGCCGTGATTGACCAACATCGGACGGTGTTCTGCTACTTATTGGTGACC
CCACACTCTGCTGTGTGCGTGCAGTGCTGTTTGCGCGGGGGCTGACATGC
AGCCTGCATTTTTTGGGAAAAATCAAGGGTAAAAAAAATTCCGGTTATTC
CCGCCGTTTCCAGACAAAGAGTTCTGTGTCTCCGGTGGCAGTCATCTCCT
ACTGCAGTGTTGTATGTTTGTTTTTTACACAGGGGAATATGGAGTACACG
AAGGCGGGCACCGAGGCTGCCCTGTGCGAGGCCTATATCGTCCTACTATG
TTCTGAAAACTGCATCTTTCGTCGCACTGGCGGCACGATTCACGGGACCC
CATGGCAGGGGTAAAACACATGTCCTCTGTAGTCGTTTCCCCACTATTCA
CGCATCATCCCTCTCGAGACAGATAGGGGGGGGGGGGTCCCATTTGTCGC
TTACTTTTGCCATTTGACGACCACGCATTATCCTTTTCGACAGAGGACCG
GTTCCTCCTACAGGAGTACTCATGGAGCCATTACAGTCCAAAACCTGGGC
GCACTTTGGGGTCTCTCTCATGGTCTGCGTACACCAGCATAAATGAAGCA
TGTTCCAAACATTACACAGAAATCATGAAGCATAGAAAGACCACCCGCCT
GTGAAACGAGACGGGACTGACTCGGTGGGATGTGTTGAGCTCTTTGCAGA
GAGAGACGGTTTTCGTAGAGATATGTCGGCCGGGAATAAAATTACCTACA
GAGATACGCAGCAGTAGTGTGTAGTAGCTCCCCAGCACAGCTCTCCTAGT
TCAAGCATCGAATGAACTCGGGGCTTTTCTAGAATGCTTCCCTGTTCGTC
TCTCTGTGGCCATAGTTCATCCCATACGTTTCATTCTCGTGCTACTGCTC
TACTGCTGTTGTACGACATATTCTGATGTTTCCACGTCGGCCTCGTCGCA
TCCATCGGTATCCTTGCCTCCTCCACCCACCAGGGCACATATCATGGGTC
CTCCCTCAGGCAAGCAGCTCACACTTTTCTGCTGCAACTTTCGCTGCAAC
TTCCGCTGCGACTTTGTGAGCTCTCTGTCTCCTCTGACCTGCCTCTGAAC
TGCCACACCCAAAAACTGACTGCTGTATACGACTACTGCAGGATTTCTCC
TTTGACGGCTCCGGGGACGCTTTTCTCCACACGCTTGCAAAGAACGCCGC
TTCGCCGACAGCAACTCCAACTGGCAGCGGCAATGCCGCTGTTGGCGGGG
TGCCCCTGGCAGAGGACGGCGGTAGCGACCTTCGAGCGTTGACCAGCGGC
ACCTCTGGTGGTGGTGGTGGTGGCGGCGGCAGAGACAACAGAAGTGGCGG
TAAGGTTTGTCCGAGAGGATACTACTCCCGCCGCTTGGGTGCTTGAGGGT
CGGAACGCAACGGTAGCAGTTGACCTCTCAGGATTTTTCTTTTCGATACT
CGTATGTATGGTTCGGTGAAATGCACGGCCGCGTTGTAAAAGTCGCTTTT
TACTACGTGCCCTGTGGAAAGGCATTTCCTTCTTTTTAGAGATCACGACC
ACTATTTCCTGTGACGAATGTCAAGCCGTTGATTGAATGACAATCTATTT
TCCTATGATGCGGCAATCTACTATCATATCATGCAACAATCTACTATCCT
ATCATCATGCGACAATCTACTATCCTGTCATGCGATAATCCACGGTCCTT
CATGCGACAATCCACTATCCTATCATGTTACAATCTATCCTATCATCAGA
TATATGAAATCATGTTGCTACTTGTATCTCTCCTGATAACTCTCGCCCCC
AGGGGCGCAGGAGGAAGAGCAGCAGCACCAGCACCAGCATCAGCACCAGC
ACTGACGGTAGCTTCAGACCCAATTCGTACCCCGAACCCTATTTCCTCGC
CGACTCCGTTGTCGTCGCTTTCTATCGGCGATTCTCGGTATCTCGGACAT
GCACAGCAGGAGCAGCAGCAGCAGCAGCACGACCATTGCAGGCGGAAGTT
CTGAAAGTGCTGGACTTCTTGTTCACCTCAGACCGACCGCTTGTAGAGAG
CACCGTCCAGGCAAGAAAGCTTTGGATATTCGGAGGCGTTTTTTAGTACG
AGAGACGGTTTGTAGGAATTCCTTCAAGAGGCGTTTCTCCCGGAAATAAC
GAAATGACGAAATCGAGCCGCGGTCCACCACGGCAGCTTTGCATATTCGG
AGGCGTTTGTAGTACGAGAGACGGTTTGTAGGAACCTCAAGAGGCGTTTC
TCCCGGAATTACCGAAATCGAGCCGCGGCAGCTTTGCATATTCGGAGGCG
TTTGTAGTACGAGAGACGGTTTGTAGGAAGTTCAAGAGGTGTTTGTCCCG
CAAATAAAACGAGGCGTTTTCAAGGTACAACGAGGTGTTTTTTATGAACG
AGGAGGTTTTTCTCGGAGTCGAAGACGGATATCATAGGCTGCAGCTATTG
ACGCTGTATGAACAATGAAGACTTGGAAAATTTGGTGTTGTGTTTTTTTA
CTCTTGTGCATAGACTTTGGAACTTCGAGCCGTCATTTGGGCATTTCGGT
TTCCTTGAAAAGTTCATTTGCGTGTGGCTCTTCCAAAAAAGCGCTTTTGG
ACATCGGCATGTTTCGTTGCTGCTTTGTCCTTTGGCTTTGCGACCAAGTG
ATTCATTTTTCCTGCGAGACGAGAAAACTACAGCAACCACGGTGAACTCA
GCGCACGATAGGCCTTTGCTGCGTGGGATTATTTTTAGTTCCCCCTTGTA
GATGCACCTTCCTTTTCGTCACACTAAAAATCCAGTACAATACTTGACAG
TTTTTATTTCCTCCGTAATTCAACAAAAATTCTACGGAGCAAAGGCCTAG
CGCACGGGCTCACCGATAGGGCCGTCCTCGTTGGCGATGTTTCTTGCTGC
AGGTGCTCGACAAGTCTCGTGTCGTGCAGCTGGTCGCGAGAGGATCGAGC
AGGAGCATGTGGCTCGTGCAGGGAAGCCGAGGGGCCCCGTACCTGTGCCT
CCGGGAGTACTGCTCTTGCAGGTACAGCAGTGCATGGATGAGCATACTAA
CCGCTGTATTGTGCTTGCGGATTTGTCCTGAAAAACTTCACCACGCTTTT
GCTGTCTGTGGCACACAGAAAAACAAAAACAAAAAATGCTCTGTCGTCCT
TGCGTTGGGCTTTTTTTATTATTACGCGCGTCCGCTCTTCAATGGTTGAT
GAATTGGATCCTCGGCGGTTGGAACGGGCGCGTGCATTGCTTGCTCAGCC
AGACGGCCAGATTACCCCGCCGGCTGAAGAGAGTCCGACCCATGAACAGG
CCGCAAAAACAAAAATGGGTCCGGGAATAAATGAACCACTGCGGTAGACG
AGCGCGGACAGCAATGAAGGGAAAAAACAAAGCGTAAAGAAACAACGCCT
TCTCCGGGGGGCTGAGATCGTCGAAGAACGCACCTCTTGCCTTCTTCAGT
CTCCGCAGCTGGCGATAAAACAGCAACAAGTGGGGGTGCTCTAGAATTTC
CGCATGCGAATCTACCCTTTGCTATGTTATAGGTACTGCCGTCGTGCGCC
TGCTCGATCGTGCAGTGCTGCTTGCTGCTCGAACCCCACGCGGCGGCCGG
TAGTCCGTGCGTGGACCAATTTGCAAAAATGATGTCATATATTCATGGCA
GGATGCGATGGGCTCTTCCCAACTGCTAACTGGTACATGACTACCCCATC
ATCGAATAGAATAATTGAAAATCTGTCGCCTGTTAGCGCCCTCAACCGCT
CTTCGTTCTTGTTCGCCGGCTGGGTTTGTTGATGGAGCCGACGCTTTATT
TGCCCGATTGCGAACTTTTCGCTTGTGTGTTTCTGTTTTTTTTTCAGCTT
TGGCTTATCTGGGGGAGGACTTAACGAACGAACCGTGGAATGAAATGTTC
GACAACATATTATAATAGATATTTCAACTGCTGCTGTTGCTGCTGTTGCT
GCTGCTGCTGCCGTCTGAACGGCCGGCTGAACTAGGAGCTTTCAAGAACT
CGTGCGGAGGGGTGGGGAGCATCCCGTGCTCGTGAGTTGGCCGCCCCCAA
AATACATGGTTATGCCCGAGTGCTTCAATCGTCTCTTGTGGGTGAACGTT
GAGCGTAACGGATCAACTTGCTTTGTCTGCCGAGTTCAGTTTAATGGGTT
GCTCTTGAGATTCCATCAGCACCTTGATACCACAGGAGCACACATCGTCG
GACCACTCCTGTTCAACTGGTGCATCGATAAGTGGACACCAGACTAGTA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig172:103929..109727+

>mRNA_P-littoralis_Contig172.24.4 ID=mRNA_P-littoralis_Contig172.24.4|Name=mRNA_P-littoralis_Contig172.24.4|organism=Pylaiella littoralis U1_48|type=CDS|length=798bp|location=Sequence derived from alignment at P-littoralis_Contig172:103929..109727+ (Pylaiella littoralis U1_48)
ATGATGGAACTCCATCTGCATGGGTCGGGGCGGCACGTGAACCGAGTGGC
TTGTCTCGATGCCTTTCTGGAGGATTTCTCCTTTGACGGCTCCGGGGACG
CTTTTCTCCACACGCTTGCAAAGAACGCCGCTTCGCCGACAGCAACTCCA
ACTGGCAGCGGCAATGCCGCTGTTGGCGGGGTGCCCCTGGCAGAGGACGG
CGGTAGCGACCTTCGAGCGTTGACCAGCGGCACCTCTGGTGGTGGTGGTG
GTGGCGGCGGCAGAGACAACAGAAGTGGCGGTAAGGTTTGTCCGAGAGGA
TACTACTCCCGCCGCTTGGCAGGAGCAGCAGCAGCAGCAGCACGACCATT
GCAGGCGGAAGTTCTGAAAGTGCTGGACTTCTTGTTCACCTCAGACCGAC
CGCTTGTAGAGAGCACCGTGCTCGACAAGTCTCGTGTCGTGCAGCTGGTC
GCGAGAGGATCGAGCAGGAGCATGTGGCTCGTGCAGGGAAGCCGAGGGGC
CCCGTACCTGTGCCTCCGGGAGTACTGCTCTTGCAGGAGCTTTCAAGAAC
TCGTGCGGAGGGGTGGGGAGCATCCCGTGCTCGTGAGTTGGCCGCCCCCA
AAATACATGGTTATGCCCGAGTGCTTCAATCGTCTCTTGTGGGTGAACGT
TGAGCGTAACGGATCAACTTGCTTTGTCTGCCGAGTTCAGTTTAATGGGT
TGCTCTTGAGATTCCATCAGCACCTTGATACCACAGGAGCACACATCGTC
GGACCACTCCTGTTCAACTGGTGCATCGATAAGTGGACACCAGACTAG
back to top