prot_P-littoralis_Contig171.116.2 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-littoralis_Contig171.116.2
Unique Name	prot_P-littoralis_Contig171.116.2
Type	polypeptide
Organism	Pylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length	577

Homology

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BLAST of mRNA_P-littoralis_Contig171.116.2 vs. uniprot
Match: D7G1W0_ECTSI (tRNA_int_end_N2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1W0_ECTSI)

HSP 1 Score: 332 bits (850), Expect = 1.660e-103
Identity = 249/575 (43.30%), Postives = 291/575 (50.61%), Query Frame = 0

Query:   21 ANPAAAAAASWAEGLGGGTGDDPGLPGRQTCWAVWHEDLAVFEVLQPRGDSLRSLGTTWRGRTMLHAEEGLWLVERGMLAVHPFPTNPIRPH---GTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVSMXXXXXXXXXXXXXXXXXXXXXXXXXVMGRGGVAGDTSSSAQKMDRPPLRAAGRANLSKINLLSEDISGKIPAGKPEQVFDRRESG-----------RMTPREQQHGLQQKPDCERGRPGASESAREQGAGRPLSVSVGALRETTLSRAGVPWECYRAYAELKRRSYVVRRQPADTIGYDDSAPRAAPLSCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXPCSPSS-LPVTFYVYNNRPGSPSSFRKRDPGPPDALLAVCRFEDPMPEHRSLVALAQHHADVSEKMLQRRLPERRRAGERSEGGHVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----RGGCLFLTQPRQHGNQPQARNVFRQQDVDREAEGREGLQADKRGSTRV--GLLLAGTAGVPPPPRLPPGWVKLAVVSGEAGVQLFDVGLHDAGEAVE 573
            A+ A++AA  WAEGLGGG GDDPG PGRQTCWAVWHE+LAVFEVLQPRGDSLRS+GTTWR R MLHAEEGLWLVERGMLAVHPF   P + H   GT +                                ++                             G+ G+  D  SSA K  RP      RA LS I+      SG I  G+ +   D   SG           R  P   + G +Q+  C+R RPG     R       LSVSV  L E  L+RAGVPWECYR YAELKRRSYVVRRQP DT+G+DD+APRAAPLS                                SPSS LPVTF+VY+N  G  SSFRKRDPGPPDAL+ VCRF DPMP+HRSLVAL + HA++  KM   +   RRR  E S  G VS                                     + G L L + RQ   + QAR +  Q+      +G +G +   R +T    G  LA + GV    +L    +KLAVVSGEA VQLFDVGLHDA EA E
Sbjct:   10 ASAASSAATEWAEGLGGGQGDDPGRPGRQTCWAVWHEELAVFEVLQPRGDSLRSMGTTWRSRLMLHAEEGLWLVERGMLAVHPFSPAPKKNHDPTGTASPAAPSSGIGRKNDAREMHDETGISSSTPEIAQEMRNIEHEEKENEGG----------------GQEGLTDDVDSSAGKNARP---IPPRAELSPID------SGVILTGESQHSLDPVASGETARTGQGGGCRKVPTAAKEG-RQRAGCKRSRPGQGRGERVVRPAAALSVSVSTLYEMVLARAGVPWECYRTYAELKRRSYVVRRQPEDTVGHDDTAPRAAPLS---------WFQGTGATKTSNNKLITAANHTSSPSSSLPVTFHVYSNPSGCSSSFRKRDPGPPDALVVVCRFGDPMPDHRSLVALVELHANMQMKMSMSQ-QWRRRGREDSTAGVVSDLGPDEAAPDRGSGSPEVPTSGLESERVTSGGGRESGQKGSL-LDEDRQ---KRQARTLPDQK------KGLDGGRTRGRLTTEGSGGRTLAFSKGVE---KLSTPGIKLAVVSGEAQVQLFDVGLHDALEAAE 535

The following BLAST results are available for this feature:

BLAST of mRNA_P-littoralis_Contig171.116.2 vs. uniprot

BLAST of mRNA_P-littoralis_Contig171.116.2 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D7G1W0_ECTSI	1.660e-103	43.30	tRNA_int_end_N2 domain-containing protein n=2 Tax=...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 155..181
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 227..241
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 128..149
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 110..203
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 219..283
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 423..464
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 248..262
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 164..178
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 423..483
IPR024336	tRNA-splicing endonuclease, subunit Sen54, N-terminal	PFAM	PF12928	tRNA_int_end_N2	coord: 48..101 e-value: 5.9E-8 score: 32.7
IPR024337	tRNA-splicing endonuclease, subunit Sen54	PANTHER	PTHR21027	TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN54	coord: 351..421 coord: 51..353

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-littoralis_Contig171	contig	P-littoralis_Contig171:414317..417809 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Pylaiella littoralis U1_48 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-littoralis_Contig171.116.2	mRNA_P-littoralis_Contig171.116.2	Pylaiella littoralis U1_48	mRNA	P-littoralis_Contig171 414317..417914 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-littoralis_Contig171.116.2 ID=prot_P-littoralis_Contig171.116.2|Name=mRNA_P-littoralis_Contig171.116.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=577bp
MYSRADDVSSHHDTAGVMSVANPAAAAAASWAEGLGGGTGDDPGLPGRQT
CWAVWHEDLAVFEVLQPRGDSLRSLGTTWRGRTMLHAEEGLWLVERGMLA
VHPFPTNPIRPHGTTTTTGVSAAPASGKGKGKDEKETETIVHEHDNGDDV
SMTSSSTAEGMRKQEEEEEEEEEEEEEVMGRGGVAGDTSSSAQKMDRPPL
RAAGRANLSKINLLSEDISGKIPAGKPEQVFDRRESGRMTPREQQHGLQQ
KPDCERGRPGASESAREQGAGRPLSVSVGALRETTLSRAGVPWECYRAYA
ELKRRSYVVRRQPADTIGYDDSAPRAAPLSCTCTNANKNATTATSSSSSS
SSSSSSSSSSPCSPSSLPVTFYVYNNRPGSPSSFRKRDPGPPDALLAVCR
FEDPMPEHRSLVALAQHHADVSEKMLQRRLPERRRAGERSEGGHVSSRQE
EDDGGGRRGGRLDDDVLPPGLARGGGGGRGGCLFLTQPRQHGNQPQARNV
FRQQDVDREAEGREGLQADKRGSTRVGLLLAGTAGVPPPPRLPPGWVKLA
VVSGEAGVQLFDVGLHDAGEAVEGCT*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR024336	tRNA_splic_suSen54_N
IPR024337	tRNA_splic_suSen54