mRNA_P-littoralis_Contig171.116.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig171.116.2
Unique NamemRNA_P-littoralis_Contig171.116.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig171.116.2 vs. uniprot
Match: D7G1W0_ECTSI (tRNA_int_end_N2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1W0_ECTSI)

HSP 1 Score: 332 bits (850), Expect = 4.600e-103
Identity = 249/575 (43.30%), Postives = 291/575 (50.61%), Query Frame = 1 
Query:  166 ANPAAAAAASWAEGLGGGTGDDPGLPGRQTCWAVWHEDLAVFEVLQPRGDSLRSLGTTWRGRTMLHAEEGLWLVERGMLAVHPFPTNPIRPH---GTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVSMXXXXXXXXXXXXXXXXXXXXXXXXXVMGRGGVAGDTSSSAQKMDRPPLRAAGRANLSKINLLSEDISGKIPAGKPEQVFDRRESG-----------RMTPREQQHGLQQKPDCERGRPGASESAREQGAGRPLSVSVGALRETTLSRAGVPWECYRAYAELKRRSYVVRRQPADTIGYDDSAPRAAPLSCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXPCSPSS-LPVTFYVYNNRPGSPSSFRKRDPGPPDALLAVCRFEDPMPEHRSLVALAQHHADVSEKMLQRRLPERRRAGERSEGGHVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----RGGCLFLTQPRQHGNQPQARNVFRQQDVDREAEGREGLQADKRGSTRV--GLLLAGTAGVPPPPRLPPGWVKLAVVSGEAGVQLFDVGLHDAGEAVE 1824
            A+ A++AA  WAEGLGGG GDDPG PGRQTCWAVWHE+LAVFEVLQPRGDSLRS+GTTWR R MLHAEEGLWLVERGMLAVHPF   P + H   GT +                                ++                             G+ G+  D  SSA K  RP      RA LS I+      SG I  G+ +   D   SG           R  P   + G +Q+  C+R RPG     R       LSVSV  L E  L+RAGVPWECYR YAELKRRSYVVRRQP DT+G+DD+APRAAPLS                                SPSS LPVTF+VY+N  G  SSFRKRDPGPPDAL+ VCRF DPMP+HRSLVAL + HA++  KM   +   RRR  E S  G VS                                     + G L L + RQ   + QAR +  Q+      +G +G +   R +T    G  LA + GV    +L    +KLAVVSGEA VQLFDVGLHDA EA E
Sbjct:   10 ASAASSAATEWAEGLGGGQGDDPGRPGRQTCWAVWHEELAVFEVLQPRGDSLRSMGTTWRSRLMLHAEEGLWLVERGMLAVHPFSPAPKKNHDPTGTASPAAPSSGIGRKNDAREMHDETGISSSTPEIAQEMRNIEHEEKENEGG----------------GQEGLTDDVDSSAGKNARP---IPPRAELSPID------SGVILTGESQHSLDPVASGETARTGQGGGCRKVPTAAKEG-RQRAGCKRSRPGQGRGERVVRPAAALSVSVSTLYEMVLARAGVPWECYRTYAELKRRSYVVRRQPEDTVGHDDTAPRAAPLS---------WFQGTGATKTSNNKLITAANHTSSPSSSLPVTFHVYSNPSGCSSSFRKRDPGPPDALVVVCRFGDPMPDHRSLVALVELHANMQMKMSMSQ-QWRRRGREDSTAGVVSDLGPDEAAPDRGSGSPEVPTSGLESERVTSGGGRESGQKGSL-LDEDRQ---KRQARTLPDQK------KGLDGGRTRGRLTTEGSGGRTLAFSKGVE---KLSTPGIKLAVVSGEAQVQLFDVGLHDALEAAE 535
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig171.116.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G1W0_ECTSI4.600e-10343.30tRNA_int_end_N2 domain-containing protein n=2 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig171contigP-littoralis_Contig171:414317..417914 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1836
Hectar predicted targeting categoryother localisation
Exons6
Cds size1731
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig171.116.2prot_P-littoralis_Contig171.116.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig171 414317..417809 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789830.9813411-CDS-P-littoralis_Contig171:414316..4147331680789830.9813411-CDS-P-littoralis_Contig171:414316..414733Pylaiella littoralis U1_48CDSP-littoralis_Contig171 414317..414733 -
1680789830.994872-CDS-P-littoralis_Contig171:415063..4153851680789830.994872-CDS-P-littoralis_Contig171:415063..415385Pylaiella littoralis U1_48CDSP-littoralis_Contig171 415064..415385 -
1680789831.0038307-CDS-P-littoralis_Contig171:415496..4155741680789831.0038307-CDS-P-littoralis_Contig171:415496..415574Pylaiella littoralis U1_48CDSP-littoralis_Contig171 415497..415574 -
1680789831.0121615-CDS-P-littoralis_Contig171:415786..4163261680789831.0121615-CDS-P-littoralis_Contig171:415786..416326Pylaiella littoralis U1_48CDSP-littoralis_Contig171 415787..416326 -
1680789831.0256648-CDS-P-littoralis_Contig171:416422..4165711680789831.0256648-CDS-P-littoralis_Contig171:416422..416571Pylaiella littoralis U1_48CDSP-littoralis_Contig171 416423..416571 -
1680789831.0365238-CDS-P-littoralis_Contig171:417584..4178091680789831.0365238-CDS-P-littoralis_Contig171:417584..417809Pylaiella littoralis U1_48CDSP-littoralis_Contig171 417585..417809 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789831.0460322-UTR-P-littoralis_Contig171:417809..4179141680789831.0460322-UTR-P-littoralis_Contig171:417809..417914Pylaiella littoralis U1_48UTRP-littoralis_Contig171 417810..417914 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig171.116.2

>prot_P-littoralis_Contig171.116.2 ID=prot_P-littoralis_Contig171.116.2|Name=mRNA_P-littoralis_Contig171.116.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=577bp
MYSRADDVSSHHDTAGVMSVANPAAAAAASWAEGLGGGTGDDPGLPGRQT
CWAVWHEDLAVFEVLQPRGDSLRSLGTTWRGRTMLHAEEGLWLVERGMLA
VHPFPTNPIRPHGTTTTTGVSAAPASGKGKGKDEKETETIVHEHDNGDDV
SMTSSSTAEGMRKQEEEEEEEEEEEEEVMGRGGVAGDTSSSAQKMDRPPL
RAAGRANLSKINLLSEDISGKIPAGKPEQVFDRRESGRMTPREQQHGLQQ
KPDCERGRPGASESAREQGAGRPLSVSVGALRETTLSRAGVPWECYRAYA
ELKRRSYVVRRQPADTIGYDDSAPRAAPLSCTCTNANKNATTATSSSSSS
SSSSSSSSSSPCSPSSLPVTFYVYNNRPGSPSSFRKRDPGPPDALLAVCR
FEDPMPEHRSLVALAQHHADVSEKMLQRRLPERRRAGERSEGGHVSSRQE
EDDGGGRRGGRLDDDVLPPGLARGGGGGRGGCLFLTQPRQHGNQPQARNV
FRQQDVDREAEGREGLQADKRGSTRVGLLLAGTAGVPPPPRLPPGWVKLA
VVSGEAGVQLFDVGLHDAGEAVEGCT*
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mRNA from alignment at P-littoralis_Contig171:414317..417914-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig171.116.2 ID=mRNA_P-littoralis_Contig171.116.2|Name=mRNA_P-littoralis_Contig171.116.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=3598bp|location=Sequence derived from alignment at P-littoralis_Contig171:414317..417914- (Pylaiella littoralis U1_48)
GGGCGGTACTGCTGTAGAGCTCCCAGTACCACCATTTCCGATGTAAGGGA
TACATGGGTTTGACAAGGACCGTATGATATCGGTGTTTGGTGTGTATGAC
ATTCCATGTACAGTAGAGCTGACGACGTTTCATCACATCATGATACGGCC
GGTGTGATGAGCGTTGCAAATCCCGCCGCCGCCGCTGCGGCTAGCTGGGC
CGAGGGCCTTGGTGGTGGGACGGGAGATGATCCCGGACTTCCCGGAAGGC
AGACGTGCTGGGCAGTTTGGCACGAAGACCTGGCAGTATTTGAGGTCTTG
CAGCCGCGAGGCGATTCCCTGAGATCGTTGGTGAGTGACTATGAATGCTT
CGAAGCATGTAGGTAGGGTAGCATAGATCCAAGGTGAACGTGGCGCACAC
TAATCTGACAGTCCCGTGCGCACAATAATGTGTGTTGTGTGCTGCTTCCA
AAGAGAGGACATGGGAGGGGTCACGGTCACTTGTCAACGAAGAAGTATTG
GAAGAAGTGAGGCTGTCATCCGTAGATGTGCGGCAGATATGCAATACATG
CAGCCAGTAGCAAAAACTGACTGAGCTGAAACATTTGGAAATATGAATAT
GTCCAGCCTGGCAATAGTTCGCGCAACAGGCAGCTCTTGAGTTGGCATAT
AGTGGTCTGTGACTTCCTGGCGTCACTCACCGCTGTATACGAAGCACTTC
GAAGTACTTTTTATTTTTATCAAACCATCCCACGGATCCCAGCTGGGATA
TTTCTCACCCGAAACCTGTGGACAAAGCGATTATTTCCCAAGAAGTAAAG
CAGTATACAAATTCGACTCGAAACGTCGCGAGGGAAAAGGGATGGTCGAA
ATGGTCAAACCCTTGTCGCGATGTGAAAGATTTGGAGACAGGAACCGCAG
AAAGAAGGCGGAGGAAATAAAAAGTAAACACTCCTGTGTTGGCCTTCCTC
CCGTGTGATCCCGACTAGTACGCCCAATTAACTCAAACCGAAAGGAATCG
TAGGTGTAGACTGGCGTTCAGAATAAATGGGATGAAAATGCACACACGCA
CACACACACACAAACCGCCCACCGTGTCTTGTCTCGTCTCTCTCCAGCGA
CTCTGACACACACAATATTCACCGTACGTAAAACTATACGTGTACCGCTG
TAATAGAAGCCAGCCTGGGTTCTCGCGTCCTGGGTTTCTTCTGTATGGTA
CGGTATTGTCGGCCACTTCTGTGCTAGACATGTTCAACATTCTCTGCAGC
AGAAACTGCTGTAACTTTATGCCTTTGTTCGTGATTCGGTGGCGTCTGCG
TTGACTGGCTTTGCCTTACTTTGGCCGGTGGCGGCGACACCAGGGAACGA
CTTGGCGTGGCCGAACGATGCTCCACGCAGAAGAGGGTCTGTGGTTGGTC
GAGCGGGGCATGCTAGCCGTCCACCCTTTCCCCACCAACCCCATACGTCC
ACACGGCACTACCACTACCACCGGCGTGTCTGCAGCGCCGGCGTCTGAAC
CAACTCCCGGTGGGGCCCCGGGGGGCGAACGTGTCAAGGCGAGCACAGGC
AACTCGAGGTCGGGGCAGGGCAAACTCGACGTAGAAAGGTCGGGAAAGGG
GAAGGGAAAGGACGAGAAGGAGACGGAAACGATAGTCCACGAACATGATA
ATGGTGACGATGTCAGTATGACGAGCAGCTCAACGGCCGAGGGGATGAGA
AAGCAAGAGGAGGAGGAGGAGGAGGAAGAAGAAGAGGAGGAGGAGGTGAT
GGGGCGGGGGGGGGTTGCTGGCGACACCAGTTCGTCTGCACAGAAGATGG
ATCGACCTCCACTAAGGGCAGCAGGCAGGGCAAATCTGTCCAAGATTAAT
TTGTTGTCGGAAGACATCTCCGGGAAGATACCGGCGGGAAAGCCTGAACA
AGTTTTTGATCGGAGAGAATCTGGAAGGATGACGCCGCGGGAACAACAGC
ATGGCCTCCAACAAAAGCCGGATTGTGAGCGGGGCCGACCAGGGGCGAGT
GAAAGCGCGAGGGAGCAGGGGGCTGGTCGTCCCTTGTCAGTGTCGGTCGG
CGCTCTTCGCGAGACAACCTTGTCGCGGGCTGGTGTGCCGTGGGAATGCT
ATCGCGCCTACGCGGAACTAAAACGAAGGTAGGCCTACGTACAATTCTTA
GCCGTTTGGTGGTGGCGGTGGTCGTGGTCGTGGCGGAGTTGTCGTGGTGG
TGGTGGCGGTGGTGGTAGGGCAATGATATATTTTCGCCTGTGTTTCTTTT
GGTTCTCTGCCACTGGCTATCGCTGAGCTCTAACGCAACCACGGCCACCC
AACCCCTCCTGCACCACTTGTCCCTTGCGGCTTGGAACAGGTCGTACGTG
GTCAGGCGGCAACCGGCGGACACGATCGGATACGATGACAGCGCTCCTCG
TGCCGCGCCCCTGTCTTGGTTCGGACGCTCCCCCGCAACTGCGCGCAGCT
GTACCAACGCCGTCAGCAACATCATGACCAACACCAACACCAACAACGCC
ACCAGAGCCGGCGCCGGCAAGGACAGCAGCACTTGCACCAACGCGAACAA
AAATGCCACCACCGCCACCTCCTCGTCCTCGTCCTCGTCCTCGTCCTCCT
CCTCCTCCTCCTCCTCCCCCTGCTCTCCCTCGTCCTTGCCGGTAACCTTT
TACGTTTACAACAACCGACCGGGCTCGCCGTCCTCGTTCCGCAAGCGCGA
CCCCGGCCCCCCCGATGCCCTTCTCGCGGTGTGCCGATTTGAAGACCCCA
TGCCGGAGCACCGCTCTCTCGTTGCCCTCGCTCAGCACCACGCCGACGTG
AGCGAGAAGATGCTGCAGCGACGACTACCGGAGCGAAGAAGGGCGGGAGA
GGTGCCGCCGCCTGGCTGGGGCAGTTGGTGCGAAAAGAGGACGGGTGGAT
CAGAGAAGAATCTGTTGCTTGATGTCCGGGAAGGGCAACCGCGCCGGAAA
AAAGATGTGGTTAACCAAGGAGAAGAAGAAGAAGAAGAAGAAGAAGGAGA
AGGAGAACAACAACAACAACAACAACAACAACAACAACAACAACAACAAC
AACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAA
CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACA
ACAACAACAACAACGACTACAGAGCTGGAAGAGAAGCGAGGGTGGACACG
TGTCGAGTCGACAAGAAGAGGACGACGGTGGAGGACGGAGGGGGGGCAGG
CTCGACGATGACGTGTTACCGCCTGGCCTAGCTCGGGGTGGTGGCGGCGG
TCGGGGCGGGTGCTTGTTTTTGACTCAACCACGACAACACGGCAATCAAC
CGCAGGCCAGGAATGTTTTCCGTCAACAAGACGTCGACCGCGAGGCTGAG
GGAAGGGAAGGACTCCAAGCGGACAAGAGGGGCAGTACTAGAGTGGGGCT
CTTGTTAGCAGGGACAGCAGGGGTGCCGCCGCCGCCACGGCTGCCGCCGG
GGTGGGTAAAGTTAGCAGTTGTGTCGGGGGAGGCCGGGGTGCAGCTGTTC
GACGTTGGCCTGCATGATGCTGGCGAAGCCGTAGAAGGCTGTACGTAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig171:414317..417914-

>mRNA_P-littoralis_Contig171.116.2 ID=mRNA_P-littoralis_Contig171.116.2|Name=mRNA_P-littoralis_Contig171.116.2|organism=Pylaiella littoralis U1_48|type=CDS|length=1731bp|location=Sequence derived from alignment at P-littoralis_Contig171:414317..417914- (Pylaiella littoralis U1_48)
ATGTACAGTAGAGCTGACGACGTTTCATCACATCATGATACGGCCGGTGT
GATGAGCGTTGCAAATCCCGCCGCCGCCGCTGCGGCTAGCTGGGCCGAGG
GCCTTGGTGGTGGGACGGGAGATGATCCCGGACTTCCCGGAAGGCAGACG
TGCTGGGCAGTTTGGCACGAAGACCTGGCAGTATTTGAGGTCTTGCAGCC
GCGAGGCGATTCCCTGAGATCGTTGGGAACGACTTGGCGTGGCCGAACGA
TGCTCCACGCAGAAGAGGGTCTGTGGTTGGTCGAGCGGGGCATGCTAGCC
GTCCACCCTTTCCCCACCAACCCCATACGTCCACACGGCACTACCACTAC
CACCGGCGTGTCTGCAGCGCCGGCGTCGGGAAAGGGGAAGGGAAAGGACG
AGAAGGAGACGGAAACGATAGTCCACGAACATGATAATGGTGACGATGTC
AGTATGACGAGCAGCTCAACGGCCGAGGGGATGAGAAAGCAAGAGGAGGA
GGAGGAGGAGGAAGAAGAAGAGGAGGAGGAGGTGATGGGGCGGGGGGGGG
TTGCTGGCGACACCAGTTCGTCTGCACAGAAGATGGATCGACCTCCACTA
AGGGCAGCAGGCAGGGCAAATCTGTCCAAGATTAATTTGTTGTCGGAAGA
CATCTCCGGGAAGATACCGGCGGGAAAGCCTGAACAAGTTTTTGATCGGA
GAGAATCTGGAAGGATGACGCCGCGGGAACAACAGCATGGCCTCCAACAA
AAGCCGGATTGTGAGCGGGGCCGACCAGGGGCGAGTGAAAGCGCGAGGGA
GCAGGGGGCTGGTCGTCCCTTGTCAGTGTCGGTCGGCGCTCTTCGCGAGA
CAACCTTGTCGCGGGCTGGTGTGCCGTGGGAATGCTATCGCGCCTACGCG
GAACTAAAACGAAGGTCGTACGTGGTCAGGCGGCAACCGGCGGACACGAT
CGGATACGATGACAGCGCTCCTCGTGCCGCGCCCCTGTCTTGCACTTGCA
CCAACGCGAACAAAAATGCCACCACCGCCACCTCCTCGTCCTCGTCCTCG
TCCTCGTCCTCCTCCTCCTCCTCCTCCTCCCCCTGCTCTCCCTCGTCCTT
GCCGGTAACCTTTTACGTTTACAACAACCGACCGGGCTCGCCGTCCTCGT
TCCGCAAGCGCGACCCCGGCCCCCCCGATGCCCTTCTCGCGGTGTGCCGA
TTTGAAGACCCCATGCCGGAGCACCGCTCTCTCGTTGCCCTCGCTCAGCA
CCACGCCGACGTGAGCGAGAAGATGCTGCAGCGACGACTACCGGAGCGAA
GAAGGGCGGGAGAGAGAAGCGAGGGTGGACACGTGTCGAGTCGACAAGAA
GAGGACGACGGTGGAGGACGGAGGGGGGGCAGGCTCGACGATGACGTGTT
ACCGCCTGGCCTAGCTCGGGGTGGTGGCGGCGGTCGGGGCGGGTGCTTGT
TTTTGACTCAACCACGACAACACGGCAATCAACCGCAGGCCAGGAATGTT
TTCCGTCAACAAGACGTCGACCGCGAGGCTGAGGGAAGGGAAGGACTCCA
AGCGGACAAGAGGGGCAGTACTAGAGTGGGGCTCTTGTTAGCAGGGACAG
CAGGGGTGCCGCCGCCGCCACGGCTGCCGCCGGGGTGGGTAAAGTTAGCA
GTTGTGTCGGGGGAGGCCGGGGTGCAGCTGTTCGACGTTGGCCTGCATGA
TGCTGGCGAAGCCGTAGAAGGCTGTACGTAA
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