mRNA_P-littoralis_Contig171.103.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig171.103.1
Unique NamemRNA_P-littoralis_Contig171.103.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig171.103.1 vs. uniprot
Match: A0A6H5KTQ0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTQ0_9PHAE)

HSP 1 Score: 224 bits (571), Expect = 4.760e-63
Identity = 131/209 (62.68%), Postives = 153/209 (73.21%), Query Frame = 2 
Query:  188 MRLSVFLILLPCVSAFVTPGPA------STFFKYGRSEVYASSSMISMGAQGQPNGEGAWSVATLWRDMVGTATETKQKVDSTAADVYAELRRKVEVKKQRQSLEGQLSSLIRIEGNNMSCKVGGCVRRLASELEALQDNAAAFGSEKTGLAGSWKLIYSSAVCDGKAKSSSNDVLKSIEEISYVSENYRISRS-ENDVLRVYRRVTAP 793
            M+LSVFL+LLP VSAFV+P P                    SS+  ++GA  Q NGEG WS+ATLWRD+VG A   K KVDSTAA+VY EL++KV VKK+RQSLEGQLSSLIRIEGN+MSCK   CVRRLA+ELE+LQDNAA FGS+K+GL GSWKLIYS A C+GK      D L +IE ISYVSENYR+S S E D LRVY+RV+ P
Sbjct:    1 MKLSVFLVLLPSVSAFVSPKPVVLNNHLQRXXXXXXXXXXXSSTPTAVGAWKQANGEGPWSIATLWRDVVGPAMN-KAKVDSTAAEVYHELKKKVLVKKERQSLEGQLSSLIRIEGNSMSCKKQDCVRRLATELESLQDNAAEFGSQKSGLTGSWKLIYSRAACEGKGGGRGGDRLPTIEVISYVSENYRLSHSGEEDDLRVYKRVSPP 208
[Close]
BLAST of mRNA_P-littoralis_Contig171.103.1 vs. uniprot
Match: D7G1W5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1W5_ECTSI)

HSP 1 Score: 107 bits (267), Expect = 2.870e-23
Identity = 57/84 (67.86%), Postives = 67/84 (79.76%), Query Frame = 2 
Query:  545 CVRRLASELEALQDNAAAFGSEKTGLAGSWKLIYSSAVCDGKAKSSSNDVLKSIEEISYVSENYRISRS-ENDVLRVYRRVTAP 793
            CVRRLA+ELE+LQDNAA FGS+K+GL GSWKLIYSSA C+G       D L +IE+ISYVSENYR+S S E D LRVY+RV+ P
Sbjct:   12 CVRRLATELESLQDNAAEFGSQKSGLTGSWKLIYSSAACEGNGGGRGGDRLTTIEDISYVSENYRLSHSGEQDDLRVYKRVSPP 95
[Close]
BLAST of mRNA_P-littoralis_Contig171.103.1 vs. uniprot
Match: D7G1W6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1W6_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 3.490e-12
Identity = 47/89 (52.81%), Postives = 57/89 (64.04%), Query Frame = 2 
Query:  188 MRLSVFLILLPCVSAFVTPGPASTFFKYGRSEVYA-SSSMISMGAQGQPNGEGAWSVATLWRDMVGTATETKQKVDSTAADVYAELRRK 451
            M+LSVFL+LLP VSAFV+P P        R +    SS+  ++GA  Q NGEG WSVATLWRD+VG+A   K KVDSTA       R+K
Sbjct:    1 MKLSVFLVLLPSVSAFVSPRPVVLNNHLQRQQQQQRSSTPTAVGAWKQANGEGPWSVATLWRDVVGSAMN-KAKVDSTARKPTTNSRKK 88
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig171.103.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KTQ0_9PHAE4.760e-6362.68Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7G1W5_ECTSI2.870e-2367.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G1W6_ECTSI3.490e-1252.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig171contigP-littoralis_Contig171:353025..363086 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size3322
Hectar predicted targeting categorychloroplast
Exons5
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_003880.1
Cds size816
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig171.103.1prot_P-littoralis_Contig171.103.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig171 353212..360315 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789830.5053475-UTR-P-littoralis_Contig171:353024..3532111680789830.5053475-UTR-P-littoralis_Contig171:353024..353211Pylaiella littoralis U1_48UTRP-littoralis_Contig171 353025..353211 +
1680789830.565165-UTR-P-littoralis_Contig171:360315..3614891680789830.565165-UTR-P-littoralis_Contig171:360315..361489Pylaiella littoralis U1_48UTRP-littoralis_Contig171 360316..361489 +
1680789830.574139-UTR-P-littoralis_Contig171:361941..3630861680789830.574139-UTR-P-littoralis_Contig171:361941..363086Pylaiella littoralis U1_48UTRP-littoralis_Contig171 361942..363086 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789830.518633-CDS-P-littoralis_Contig171:353211..3534421680789830.518633-CDS-P-littoralis_Contig171:353211..353442Pylaiella littoralis U1_48CDSP-littoralis_Contig171 353212..353442 +
1680789830.5335078-CDS-P-littoralis_Contig171:355051..3551681680789830.5335078-CDS-P-littoralis_Contig171:355051..355168Pylaiella littoralis U1_48CDSP-littoralis_Contig171 355052..355168 +
1680789830.5484536-CDS-P-littoralis_Contig171:359352..3594471680789830.5484536-CDS-P-littoralis_Contig171:359352..359447Pylaiella littoralis U1_48CDSP-littoralis_Contig171 359353..359447 +
1680789830.5569513-CDS-P-littoralis_Contig171:359942..3603151680789830.5569513-CDS-P-littoralis_Contig171:359942..360315Pylaiella littoralis U1_48CDSP-littoralis_Contig171 359943..360315 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig171.103.1

>prot_P-littoralis_Contig171.103.1 ID=prot_P-littoralis_Contig171.103.1|Name=mRNA_P-littoralis_Contig171.103.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=272bp
MRLSVFLILLPCVSAFVTPGPASTFFKYGRSEVYASSSMISMGAQGQPNG
EGAWSVATLWRDMVGTATETKQKVDSTAADVYAELRRKVEVKKQRQSLEG
QLSSLIRIEGNNMSCKVGGCVRRLASELEALQDNAAAFGSEKTGLAGSWK
LIYSSAVCDGKAKSSSNDVLKSIEEISYVSENYRISRSENDVLRVYRRVT
APRKSTAAAAAVAPVGAGARAAPGDDTSAAMDAEGPFEGKNVAGRTSATA
AGRRLIKQPLRKRLFFGFLRR*
back to top

mRNA from alignment at P-littoralis_Contig171:353025..363086+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig171.103.1 ID=mRNA_P-littoralis_Contig171.103.1|Name=mRNA_P-littoralis_Contig171.103.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=10062bp|location=Sequence derived from alignment at P-littoralis_Contig171:353025..363086+ (Pylaiella littoralis U1_48)
GAATTGCAAAAATGCAAAAATGTACACGTCACCCAAAAATAGGGACCCGC
TCTTCTGACGACCGCCCCGTCGTGCCCTCCGTGCAACCATCTGCCTCAAC
AAACCAGATCGAAGAGGCCGCCGTCTTTCGTCGATCATCGCCGATACTCT
TCGTATCCCTGCACCCATCACCCCCAGAGCACAAACCATGAGGCTGTCCG
TGTTTTTGATTCTTCTCCCTTGCGTATCGGCGTTCGTGACGCCAGGGCCG
GCCTCAACCTTCTTTAAGTACGGCCGTTCTGAAGTGTATGCATCATCGTC
GATGATCAGCATGGGGGCGCAGGGGCAGCCCAACGGGGAGGGCGCGTGGT
CCGTTGCGACCTTGTGGCGCGACATGGTGGGAACTGCCACCGAGACGAAG
CAAAAGGTGGACTCTACGGTGAGCTGGGGGAAAGGTTCATGGGGGATGTA
GAGGGAGTAAGAGGGAGGAACGGGACGGTGATTCGGTTGGAGTTTGGTAT
TGGCCTGGGTTTTTGAAATGCAAAACGAGTACAGCAGTAGTGACGAGTCT
TGAGCCTTGAGTCTGCTTCTGGGAAAAGATCACGGACGCGATTGTTCGTT
TATGGCGCGATGCGTCGCAGCGGCGAGGTACTAGCCTCGGAAAAGGGTTT
ACCACGGCCGTGCTTACGTCTCGTGTGTACTTACGTCGCGATTCTTTCTT
CCGCCGCCCCTGGCTGGGGTTTTAAAAACACAGATCGAGAGCCATCCCTC
TATCTAAACTATCACATCACACCACTCCAGTTCCGAACAGCAGTACAGCA
TGTAAGTGTACAGAGTTACAAAATTGTATCATATATAACGGAGTACTTGA
GTACCTATCAAGCGAGATTGTTCTGCGTTTTTGTGTTGCCTGCCCCCCCC
CTCCGTTACTTGTTCCATGAATGGAATCTGCCACCTTGACAGACATGGTA
CATTTTGTTCACTCCACCATCTCTCTAAACGCTCATGGGGTGCACAACTT
CACAGCAATGGTCCAGGTCTCCTTCTTTATCCGTGTACTCGTTTTTGTTT
TCCTTCTAGTTTCGGCGCACTGCTGTGCCAAAAATTTGGGAACATATTTT
ACGTCTGGTCTCTGATGCGTATTGTTCTCCAGACATGTCGCATCCAGTAT
CAATCACTTGACGTGGCGATCATAATCGTTTGTGATAGGACAAGTCATGG
GTAGGACAGCCCTAGACCACGTACTGGTATCATTATCGTGCTTCGTAGCT
CAAGTTCTGCCACAGCTGCAGCAGAGCGGGGCAGTTCACTGAAGAACAGC
ATTACAACCTATGCATATTCATGCATATTCATGTGATCCGATATAGGGGC
AACACCGCGGAGAAAGGACGCAACCAGTTGCCCGGAAAAAGACATGTTCA
CTCCTCTTCCCCTTGCACTTGTACGGAGTACACACCAGATTTCCACAACG
ACAGCTTTTCAAGCTCGCCCTCTCTCTCTCCCTCTCTCTCTCTCTCTCGT
TCAGAATCTAGGCACCTCATATCGTATGATACTCTTATCATGTCATATCA
TATGTACGGTATCATTCGGATGTGTATCTCCATAAACTCAACAATGTGAC
GCCGACAACCCGGAAATAATTCCTCGCACGGTCGCCCCGGTGGTTCAGTT
GGTAATCCACGTAATCTTCTGACATCACGAGTGAGTTCGGATCCCAGTGC
AGTTACACGGTCTGGGTTTTCTGCTCACAATGCGCGTGAAAGTGGAAAGC
GATTAATTCGTGAGTAAACCAAATTCGATCGTGTCATCGACGAGGGAAAG
GGATCGCTGACCACTTTCTCTCGGATAAAAGATCAACCAAAACAAGGCAA
GCACCGCAGAGGGAAATGGAGAAAAAAAATAGAGAAACTCCTGTGCCGAC
TTCCCCCTGTGTAACCCCAGTTGGAGCGTCGACCCTCCCGAGAGGTGTAG
AGTGGCGTCCAATGAAAGGGATGACAACACACACTTGTACTTACGAAATT
CGATGGTATGTGTAAAATGCACGACAGGCTGCTGATGTGTACGCGGAGCT
TCGAAGAAAGGTGGAGGTGAAGAAGCAGAGGCAGTCGCTTGAAGGGCAGC
TCTCCTCCCTCATCCGCATCGAGGGGAACAACATGTCGTGCAAGGTAAGC
TGCTACTGCGGCTGCTGCTGCAGCTGGGTTTTCTTCCATTTGGCCGACGA
CGTTGAAAAAACGAAAAATGCAGTGTTGAAATTGAAAGAGCCAGACTGAA
ATCATGTCCGTGTGACCTAAGCTGACGATGTATCAAACCAGGCACAGCCA
GGAAGGCATACAGCAGTATTAAACGATGTCCATACCGCACGCATCATTCC
AAATATACTTATATTTTCTGCGGGGCCGTTTACCGTATTGTGTAATGACC
GTGCTGTTGTTATCCTACCAGTACTTCGTACGTACTTCAAATTTGTTATA
CAGCAATATTCTCACAAGCCCTGATACTGCTGTGTAGCTCAGGGTACCTG
TACAGCACTGGACACGTTATATTATATGATATGATGTGAGATACTTCTGC
ACAGCCTTATGGTTTTTTTTTGTACTCGTAGACCGGTTCTTGGTTATCGT
CGAAGACAGCGAGAAGCGCGCCGTAAAAATTAAATTTAGAAGCTGAACTT
GACTCAAAGTACCAAATCAACTCTGAAGGATGCGAGACGAGGAGATACGA
CCTTCTGTACTCGTATCCGCGCCGTATGATTTGATGATGCATTGCATGTG
AAATTTATATTTATCTAGCCAGCAGGTGGTTCAAGCAGCAGACAAACCAT
GCCACCATGCCGATAAACGAGTTGGTCCGGCTGCGATATATTCTGTTCTC
TATTCTCTTATATGGGCAGCATGTCTTTCTTTCTCCACCTGTTTCATAAG
GAACAGGGAAGTGGTCGTTACGAATCACGAAAGTTATACTGAAGTACGTC
GTATCACATAATCAGCTCAGTATAATTCGGGAGCCATCTGCTGTTGTCGG
AATTCGTTTCGTGTTTTGTGCGTGCCTGTGAGGTTCACGTCAGGTGTGTT
GAGTACATGTTACCCACCACAACACGAATGATGTCACCTGTATGATGTGG
TCCGCAAAAACAATGTCGCAAACACTCTCAACAGCAGTGATTTACCTGCT
CTGAAAAAAGGGGGTTTTGCTCCGAGGCCGACTTTGGCAGCAGCAGCAGG
TCATATTTCGATTACATTTTGGAAACACTACTGACGCACAAAGCAGCTGC
TGCTGTGCTGTCGTCTTTTCTCTGAAAGCAGTAGTCCGAGCACACCCGTC
CCTTCACCTCGCGTTTGCTGACGCCTTCAGAATACAAGGGCCTACAGCAG
TAATATTTACGTTTCTCCCGAGTATATTTCTTCGTCTGCCCAACCCACAA
ACGGGACTGCGTGGGATTAAATGACGTGCGATACCCCTTTTGCCTTAGTA
TTTTGACATGGAAGGGCTATCGTTTTCCTTGAAAGGGCACTAGTGGTTCG
GAATTGAGAAGCAGTGTGCGTTGGAGGGCCGCTTCTCAAATACTTTCTAC
GATTTAAGTGCGTCGAGCCGTGTGCGTTTTGCTGTTTGGTGGCGTGGTAC
CGTTGCTGCAGTGCTTCAAAACAACTGGTGTTTCAGAAAGCACAACGAAC
ACAAAACGCCTCTCATCATTTTTCACAAAAAGGGACATAAAAAATAACGC
GCCTCCGACGACATACCGCACCGGTAGTCATGCGCACAGAACACGGACTG
CGGCAAACACAGCAGCAATGAGTAGGTGCTGTTTTCCTCATCAGTTCAAG
CCCTTGGTCGTAACGATCTGTGCTGAACTGGTGCCAAAGTATTTCAAAAT
GTGGACAATGGGACAGACACACACAGACATACAGACAGGTATAAAACCTC
GAAAATGATAGAAAGGCACCCCTGTCTCAGTTTATTTTTTATTTTTTATT
CGCACATACACTCACACATACCAGGTACACATTATGACCAAGCGGTATGA
AATCGAAGCGGTTCGACACCGAAGTTACACTTCGCTGCGCTCGTCCACTG
CTTCTCAGTACAAGTGGATCGGGGTTGAGAAGCAGTGTGCGTTGGAGGGC
CGCTTCTCAAATAACCGCGTTAAGCCGTGTGCTTTGCTGTTTGGTGCAGC
GCTGCTGCTGCAGCAGAACAGCTGTGGTGTTGTTCCGCCAGTACCACGAA
CACAAAACGCCTTTCATCATTTTTCATACAAAAAAGGGACACCGGTTATT
GCGCGCCTCCGACAATATAGCTGTGCGTATCGGACACGGGCTGCGGTGAA
CCCAGCAGCAATGGATAGATTACATTTAGTCCATCAGCTGAAGCTCTTGG
TCGTGACTACCTGTGCTGAACTGGTGCCATAGTGTTGCAAAATGTGGACA
CTATCTCGGACAGACAGACATACACAGACCACCATCAACCTCGAAAATTG
GATAAAGGCACCTCTAATTTTTTTTGTTATTATTCGCACAATACACTCAC
ACCTACTACACATCACGACCAAGTCGGTATAAAAACGAAGCAGTTCAACA
CCGAAGTTACACTTCGCTGCGCTCGTGGACTGCTTCTGAATATTAATGGT
TCAGTCAGCCTGTGGCGGCGGCAAACGGGATTCGATACTTTCAAGGACTC
ATGTACCGAAACGACGAAACTGCTTCAATTCGATCTATCATAAAGATCCA
ACACCTATCATACAGCAGTATTCATAGCCGATTTATGTAGTCATCCTTTT
GTTCCGATGGCGGTGTGTACGTACCGATTCGTGATGTCTCGCCCTACCGC
CTATCCTACTATCGGTACAACAGTACCTGTGTTGAAATCACCAATGGCAC
CGATAGCCTATGGCGCAGGTCTATTTATTGTACGGCGGTGTAATCTCGGA
TTTTTCTCACCGAAGTCCTCGAGAGTGGGAAACGACTACAATTTGTCGCA
GGAAGCGAACACATTAACACTTCACATGTGACGAGGGTAAGAGACGATTG
AACCCTTCTTCCGATGAAAATCTGTCTTGAGGCAAAAGAGTCAAGCACCG
CAGAGGTGGGTGAAAAAAAAAATGGTGTGACCTTCCTTACGTGCGACCCC
GGCTGGCGCACCCACTTGATACCGAAAGTTGTTCAAAATAATTAGGACGA
AACACACACACACACACACACACACACACACACACACACACACACACACA
CACACACACACACACACACACACACACACACACACACACACACACACACA
CACACACACTGGGTGCAAGTTCAGGTCTACCCCATCCTGGACGATGCCGT
TGTAAATACAGAAGAACTTGTACCTGGCATAATACGTCGGGTAACGAAAG
TTCAGGAAATGGGTACCTATGGGAGCCCATCTATGGACAAGATGATTTAA
CATGATGTACGAAGTATTTTTTTAGTTGATGGCCCATAGTAGCTCATCGG
CGGAAAGTGTGGGTTGGAGACAGGTACCGGGCTAACCCTCGGTTGGCAAA
ATGGGCCACAACAGGCTAGCATATTCGCACGACCTGAAACGTTTAGAGGG
CGGCCTTTCGCCAGGTATGACCCGGCACCAGCAGGCTCTTGTTGTGAGAG
GAGTTACATGCGTGTCCCTTGTATCGATCAGTGCCTATTGGTTCCAACAA
AAGGCAAGTCTACGACCGATAAATCCCCGTTGGTGTCGGCAGCAGGTAGC
CCGTGCTGGTTTTTGATCATAATCGGAACGCAAATGTGATACGTCTATGT
TCCTGTTGGGCCCCGAATAACAAAGGCGTTGCGGCGCTGTGCAATCGATC
CTTGTTTACGATACTTGCATGTTCTGTGTGATACATGTCTGTCGTTGTCG
ATCATCGGAGACACTTGACCCCTTCGATGTGGTACCATACGTTATCATGT
TTCAAGAAATATCGATGGAACCCCTTAAAATGTGCTATGCACACCACCAG
CGCATGCAGTTCACCAGCTCACACAGCATGCACCGTACGTATGCAGCATG
ACACACATTACCACGTAACGGATGACACGCAACAGGTACCGATCGCACCG
CACGGGACCCGATCGATCAATCGGTAATTTTTATCCGACCTTGAATTAAG
AAATAACAACTGACTTTGTACGATCTAGATGGCATTCCCAAACCCATCGA
TGGCACGATCTAGATGGCATTCCCAAGCCTATCGTCGGCACCCCGGGATA
CGCCCTTCACTTTTGGGGTATCGCTTCGTATACATGACTTCCCACGTTGT
CGTGAAATTTGAACAATATAGTCTTGTACCCGATTTTAACGAAAAGATTC
TCACTAAACGTGCCTTCTCTGTCCACAGGTTGGGGGGTGCGTGCGACGCT
TGGCGTCGGAACTGGAGGCCCTTCAAGACAACGCTGCGGCTTTCGGATCT
GAGAAGACGGGCCTAGCAGGAAGGTATGAACGTGTCCGTACATACGTACC
ATGGTACAAAACAGCACACACTTGACGGATATTTTAGAAGACGGGCCTCG
TAGGAAGGTATGAAGGTGTACCTCCGTAAAATACAGCACACACTTGACAA
ATGTGTTACCTGGTATCGAGATCGGTCGGTGGGTGCGCTTTGCTACATTG
CCGTCTAGACGTCAGCAGTTCATGTTCTTCATTCGTAGATATTATGTTGC
GGTGCATAGACCACGGCGTCATGAAGCCGCTCAGATCAACAGCAGTAGTT
GTGCACCACGACAGCAAGTGCTCACTCATGTATCCGTATCCCCCCGCCCC
CCCTGTCCGCTGCCTTGGGTTTGCGTTTGCGTTTGCGTTTGCGTTTGTGT
TTGTTTCCCCACTTTCGCTTGGCCCCACCTCCACCCTTGAAACGGAACAT
CATCGAACTAAATGTGGACGATTTGACAAAAAACAAAAAAAACGAAACGG
AACGAAACGAAACGGCAGCTGGAAGCTCATCTACTCGAGCGCGGTCTGCG
ACGGCAAGGCCAAGTCGTCCTCCAACGACGTCTTGAAATCCATCGAAGAG
ATCTCGTACGTGTCCGAAAACTACCGCATCTCCCGCTCCGAGAACGACGT
CCTGCGCGTGTACCGGCGGGTCACCGCACCACGCAAATCAACGGCGGCGG
CGGCAGCAGTGGCGCCGGTGGGAGCGGGCGCGCGAGCGGCGCCAGGCGAT
GACACGTCGGCGGCCATGGATGCTGAGGGACCATTCGAGGGGAAGAACGT
GGCGGGGCGGACTTCGGCTACGGCCGCGGGACGGCGGCTGATCAAACAAC
CTCTGCGCAAGCGCTTGTTCTTCGGGTTTCTTCGGCGGTAGGGTGGGTTT
TGACTCGTGCGCGAGCGGAGAGCTTTCATGTACATCACGTGCGAGTGAGT
GAGTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTTATCTCAACAACGA
TGCGCGTGCTTCGCCTTGTCTTTGTCTTGCACTGCCTTGGTCCGTTTTTT
TGTATACTGGGAGTTTTGGAGGGTTTTGGAGAGTTTTGGGTGTGTAGAGC
GCGATGACGATGGGACAGAATCGATTAAGCTGGGAAGGCCTGTGTTATGT
TGGCTGTTATAGAGATGGCGGTTGTTTGGTAAGTTGTGCCGGCACGAACC
GAAGCGAACAGCAGAATAATCACGATATATGATACGCCCTTTTCTTTTTT
TTGCGTGGTTGAGGTTGACTGCTGTGACACAACGGCATTTACGTGCCGTG
GGTACTGAAGGATGAAGCGGCCGCGAAATATTTTGGATGCCCCGTGGGAT
TTCGCGTTGTATGTTTGTCTTGTCCGTGGAGTGGGCCGAGATAATTAACA
CGTGTCTTGCTGTGGGTGGGAGAGCGTCGTCGAGTCTAGTGCTGTTGTCA
CCAGACAAGACGCTTGTTGTGCGTGTTTGGGTTGCTTTTTTTGGCGACGA
GCTCACGGTGATCTCGTCAGGTTCCCACGCACAGGTGCATCGTGGTGTCG
GTTCAGTTTTCGAGGCGGTTTCGTTTTATGACTGCAAGAACGATACCTGG
AACGAAGGGAAGTGATACTTACAGATGGTGTGATTTACCTTTCATCCTTG
GGGGGTACCGTTGCGTGATGACGAGCACGGGGGAATAAAATAAACCTTGG
CAGGAGGCGCCAGGCGACGACGATAGCGATTGCGATTGCCAAAGATGATA
ATTCGTTTACTCATAGCCGTGGTGCGGATTACGATACGTGCATAGAGGTG
AGGAGAGGGGGCGCGTCAAGTTTCAGGGTCGTTTGTCGTTATACAGTCAC
GCGAGACTTGCAGACAGGGTAGTAGCTGTTGATAAGGTGAGAGTCGGAGG
GCGGCGTAAGGTAATGAATGCTTCTCTGGCGAACGATCCCCTCTGTTCTC
TCCCAGATTCAGGCCGGTTTTGCGAATCAAGTTATAAACCGCATCAGCCT
GTATGATTTGTACATATTAAAAGATCACATGTGGCACGCACGGGCGGAGG
AACGGCACCGCACTTGTTGGGTCTGGCAAAGAAACTCTTATCTGACCGTC
AACACGCGCCATTTGGGGTCGTGGTGGTGGTGGTGGTGGTGGGTTTCACA
GCACCGTTGTATCGCCGGTGCTTTTGGATGCATCGTGGGGCGTTGTTTGC
GAGAACGCCCCAGTCATTGCGATTTTTTTTTTTGCTTGCTTGAATCTATA
TTTGTTTGCAGATTGTCGCCTCTGTTGTTTGATAACGCTATCCTTCGAGA
CAAGTTGAATGTATTGGGGGGGGGAGGGGGGAGGCTGCTGAAGTTGTCGG
GGGCACTCCGTGTCGACGGTTTTACTTGAAAGGCACCGTAGCTTGAGATA
TACCGTTAACAACCACCGCGCAGGAGGAGTCGATATAATGTGGGTGAACT
CGCCGATGGCTAGAGACAAGTTTCGTTTCTTTCGCCCGTGATGTTTATTG
CTGTTGACTGCGAAGAGTTTGTTTGCAATCTCGTGGTGTTGCCAGGTCCC
AACCTCGAGGGCGAAAGCTAGGCTACGGATATCACACGTCTAAAGCTTCG
TTGGCGCGGGCACTTTCTTTTTCTTCTTTCATGTATTGGGATTCGATGCA
CGTTGTGAAATCAAACACGAGGAAACTTTTGCGGCGTTTGCATGCGCTGT
ACTGCGGAAATTTTTGGAGGTAGAGAGAACACGTTTTTTTGTTCTGTGCT
CGGCCGCTGTTTGGCTCCGCTTCACCGCATGTATTGGTCGCAGACCTCTT
TCTAGATAAGCTTTGTTAGAAGTTGGCGTTTATTAGGAAATAAGCAAATG
GGGGGGTAAAGGGGGGGATGCGCGAGGAATCGAGCGAAAATCGCTATTTT
TTTCGCGGCACACCGCCGTGCGTTCAATGTGCAATACGCTCATCATGTAT
GTTTTACCGAGGGGTATTTTTTTGAAGGGTATGATGGGGGTTGGGGGGGA
TAGATCCGTGGTTGTTCTTCGTGGGCGGTTTTTATTCCCCCCGAATGACG
CGTTGGGAGATTCCAAGGCATTTCTTGTATAGCAACGCATATTGTAGGTA
TTGGTCGATTGTTGGTTTTTCGGTAGTCATGTTGAACACTGATGTCATGT
ATGTATTACGCCATTTGTATCGTGGGATCTTTCTCGATTTGTTTCCTCTG
TTGTAGGGCCGTCCCAGGTACGGATGTTTGTTTCGTTATATTTTTGAGAT
GGCTAGAACGAAAGAGATGAATAACATGTGTGTTTGAAATCATGCGCACC
CAACACCCCGAAAAAATAAGGTATTTTTTTATGCTTGAAATAAGCGATGG
CTCGCCCACGTTTTGAAAGTCAGTTCTGAATCTTTCGCGCTTCGGCTGCT
GTTGCGAACGTTCTCACTAAAATTTCGGAGAATTCGACCAGTCAGTTTTT
CGAGAGCTTTATTTTTTGGGAGCACGCCTGTAGTTTTTATTTTTTTGTGG
AAGCACGCCTTCCCGACGCTCGCGCCTCTCCGTCTTCCCACATCTCTTGC
GGAAAAATGGAAATAGGATCGGGATGGAGTCGAGCTTGGGGCAGGCCCCA
GTCTATCGGTTCAAAAGCCCTTTGTCGAACAAAACTGTTAAAATAAATAA
AAACGAGTCTAC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig171:353025..363086+

>mRNA_P-littoralis_Contig171.103.1 ID=mRNA_P-littoralis_Contig171.103.1|Name=mRNA_P-littoralis_Contig171.103.1|organism=Pylaiella littoralis U1_48|type=CDS|length=816bp|location=Sequence derived from alignment at P-littoralis_Contig171:353025..363086+ (Pylaiella littoralis U1_48)
ATGAGGCTGTCCGTGTTTTTGATTCTTCTCCCTTGCGTATCGGCGTTCGT
GACGCCAGGGCCGGCCTCAACCTTCTTTAAGTACGGCCGTTCTGAAGTGT
ATGCATCATCGTCGATGATCAGCATGGGGGCGCAGGGGCAGCCCAACGGG
GAGGGCGCGTGGTCCGTTGCGACCTTGTGGCGCGACATGGTGGGAACTGC
CACCGAGACGAAGCAAAAGGTGGACTCTACGGCTGCTGATGTGTACGCGG
AGCTTCGAAGAAAGGTGGAGGTGAAGAAGCAGAGGCAGTCGCTTGAAGGG
CAGCTCTCCTCCCTCATCCGCATCGAGGGGAACAACATGTCGTGCAAGGT
TGGGGGGTGCGTGCGACGCTTGGCGTCGGAACTGGAGGCCCTTCAAGACA
ACGCTGCGGCTTTCGGATCTGAGAAGACGGGCCTAGCAGGAAGCTGGAAG
CTCATCTACTCGAGCGCGGTCTGCGACGGCAAGGCCAAGTCGTCCTCCAA
CGACGTCTTGAAATCCATCGAAGAGATCTCGTACGTGTCCGAAAACTACC
GCATCTCCCGCTCCGAGAACGACGTCCTGCGCGTGTACCGGCGGGTCACC
GCACCACGCAAATCAACGGCGGCGGCGGCAGCAGTGGCGCCGGTGGGAGC
GGGCGCGCGAGCGGCGCCAGGCGATGACACGTCGGCGGCCATGGATGCTG
AGGGACCATTCGAGGGGAAGAACGTGGCGGGGCGGACTTCGGCTACGGCC
GCGGGACGGCGGCTGATCAAACAACCTCTGCGCAAGCGCTTGTTCTTCGG
GTTTCTTCGGCGGTAG
back to top