mRNA_P-littoralis_Contig171.64.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig171.64.1
Unique NamemRNA_P-littoralis_Contig171.64.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig171.64.1 vs. uniprot
Match: A0A6H5J557_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J557_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 2.400e-18
Identity = 79/218 (36.24%), Postives = 114/218 (52.29%), Query Frame = 1 
Query:    7 SGDAQRARDVAK-FGDRPDDWINPFSLAFVLFGRPAGEQEDVDLKCKVSGGGKTGAAATAAVEPGGAGVGSAAKAHG------LGRHDLANLDGAGGGAGGQQSRAAVKKERHVANSEAKRAEESKATAKFRAEALKAMTAPAQSSESSKRLALSVETLTRTAVLRQRLAEEGAEERRWTFRKGAKESHIAHLEKMGKINTEQWDRAQEELLEILSNP 639
            +GDA+   D+ + +G +P+ W++P SL F +FGRPAG  EDVDLK K++ G  +G                            L    L  ++    GAGG+ SRA +K   H  N+E K+ + ++A A  +  AL+A++ P + S+SS  L  SV+ LTR  V ++ L +E AE  RW  R  A ES +A   KMGK +T +    QEELL    NP
Sbjct:  270 AGDAETEDDLTRLYGPKPEHWLHPASLVFAIFGRPAGTNEDVDLKLKMTSGRPSGTKXXXXXXXXXXXXXXXXXXXEDESKPCLSTKGLKLMN----GAGGKHSRAEMKTLAHEVNAENKKLKGAEADAVLKRRALEALSTPPEDSKSSLELVESVKALTRAVVSKELLDQEQAERARWNERVRAMESKLALWGKMGKGSTAEAQALQEELLHAYDNP 483
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig171.64.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5J557_9PHAE2.400e-1836.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig171contigP-littoralis_Contig171:183088..183826 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size740
Hectar predicted targeting categoryother localisation
Exons1
Cds size669
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789829.185187-UTR-P-littoralis_Contig171:183087..1831571680789829.185187-UTR-P-littoralis_Contig171:183087..183157Pylaiella littoralis U1_48UTRP-littoralis_Contig171 183088..183157 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789829.1970034-CDS-P-littoralis_Contig171:183157..1838261680789829.1970034-CDS-P-littoralis_Contig171:183157..183826Pylaiella littoralis U1_48CDSP-littoralis_Contig171 183158..183826 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig171.64.1prot_P-littoralis_Contig171.64.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig171 183158..183826 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig171.64.1

>prot_P-littoralis_Contig171.64.1 ID=prot_P-littoralis_Contig171.64.1|Name=mRNA_P-littoralis_Contig171.64.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=223bp
GASGDAQRARDVAKFGDRPDDWINPFSLAFVLFGRPAGEQEDVDLKCKVS
GGGKTGAAATAAVEPGGAGVGSAAKAHGLGRHDLANLDGAGGGAGGQQSR
AAVKKERHVANSEAKRAEESKATAKFRAEALKAMTAPAQSSESSKRLALS
VETLTRTAVLRQRLAEEGAEERRWTFRKGAKESHIAHLEKMGKINTEQWD
RAQEELLEILSNPPAQRRRQLR*
back to top

mRNA from alignment at P-littoralis_Contig171:183088..183826-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig171.64.1 ID=mRNA_P-littoralis_Contig171.64.1|Name=mRNA_P-littoralis_Contig171.64.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=739bp|location=Sequence derived from alignment at P-littoralis_Contig171:183088..183826- (Pylaiella littoralis U1_48)
GGGGCAAGTGGAGATGCTCAACGTGCACGTGACGTGGCTAAATTCGGCGA
CAGGCCCGACGACTGGATCAATCCCTTCAGCCTCGCCTTCGTGTTGTTCG
GGCGGCCCGCCGGCGAGCAAGAGGATGTGGACCTCAAATGCAAGGTGTCT
GGAGGCGGCAAGACAGGCGCGGCAGCAACTGCCGCGGTCGAACCGGGGGG
TGCGGGCGTTGGTTCTGCGGCGAAAGCCCATGGGCTGGGCAGGCACGACC
TGGCCAACCTGGATGGGGCCGGGGGCGGGGCCGGCGGTCAGCAAAGTCGC
GCGGCAGTTAAGAAGGAGAGGCATGTCGCGAACTCAGAGGCAAAGAGGGC
GGAAGAGAGTAAGGCCACCGCTAAGTTTAGGGCCGAGGCCTTGAAGGCCA
TGACTGCCCCCGCCCAATCTTCGGAGAGCTCGAAGAGACTGGCCCTTAGC
GTGGAAACGCTCACCAGGACTGCCGTGCTGAGGCAGCGTCTCGCTGAAGA
GGGGGCCGAGGAGAGACGCTGGACGTTCCGAAAGGGCGCGAAGGAATCCC
ATATTGCCCACCTCGAAAAAATGGGAAAAATAAATACAGAGCAGTGGGAT
CGAGCACAGGAAGAGCTGCTGGAGATATTGAGCAACCCCCCGGCGCAACG
ACGCAGACAGCTACGTTAGAGTTGTACCCTACCACTACCCTTCAGGGCTC
AGGTAGTGGTGCCGGAGCCGGTGCCGCAGTCGATGGCAG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig171:183088..183826-

>mRNA_P-littoralis_Contig171.64.1 ID=mRNA_P-littoralis_Contig171.64.1|Name=mRNA_P-littoralis_Contig171.64.1|organism=Pylaiella littoralis U1_48|type=CDS|length=669bp|location=Sequence derived from alignment at P-littoralis_Contig171:183088..183826- (Pylaiella littoralis U1_48)
GGGGCAAGTGGAGATGCTCAACGTGCACGTGACGTGGCTAAATTCGGCGA
CAGGCCCGACGACTGGATCAATCCCTTCAGCCTCGCCTTCGTGTTGTTCG
GGCGGCCCGCCGGCGAGCAAGAGGATGTGGACCTCAAATGCAAGGTGTCT
GGAGGCGGCAAGACAGGCGCGGCAGCAACTGCCGCGGTCGAACCGGGGGG
TGCGGGCGTTGGTTCTGCGGCGAAAGCCCATGGGCTGGGCAGGCACGACC
TGGCCAACCTGGATGGGGCCGGGGGCGGGGCCGGCGGTCAGCAAAGTCGC
GCGGCAGTTAAGAAGGAGAGGCATGTCGCGAACTCAGAGGCAAAGAGGGC
GGAAGAGAGTAAGGCCACCGCTAAGTTTAGGGCCGAGGCCTTGAAGGCCA
TGACTGCCCCCGCCCAATCTTCGGAGAGCTCGAAGAGACTGGCCCTTAGC
GTGGAAACGCTCACCAGGACTGCCGTGCTGAGGCAGCGTCTCGCTGAAGA
GGGGGCCGAGGAGAGACGCTGGACGTTCCGAAAGGGCGCGAAGGAATCCC
ATATTGCCCACCTCGAAAAAATGGGAAAAATAAATACAGAGCAGTGGGAT
CGAGCACAGGAAGAGCTGCTGGAGATATTGAGCAACCCCCCGGCGCAACG
ACGCAGACAGCTACGTTAG
back to top