mRNA_P-littoralis_Contig171.14.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig171.14.1
Unique NamemRNA_P-littoralis_Contig171.14.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig171.14.1 vs. uniprot
Match: A0A6H5KW14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW14_9PHAE)

HSP 1 Score: 201 bits (510), Expect = 1.230e-60
Identity = 96/114 (84.21%), Postives = 101/114 (88.60%), Query Frame = 1 
Query:    1 GTHYLCCIINLVDEELYRVFVEEREKSKTVALTYPATIHKISPARG-----VAGWLLSRVWSHSRRHNIPDQEWDFIVQHNHSPSSAGAIERDPILKDMVGEVDARNDPVNGAG 327
            G HYLCCIIN+VDEELYRVFV+EREKS TVALTYP  IHKIS ARG     +AGWLLS+ WS  RRHNIPDQEWDFIVQHNHSPSSAGAIERDPIL+DMVGEVDARNDPVNGAG
Sbjct:   95 GRHYLCCIINVVDEELYRVFVKEREKSNTVALTYPTEIHKISTARGKVLYYIAGWLLSKAWSRKRRHNIPDQEWDFIVQHNHSPSSAGAIERDPILQDMVGEVDARNDPVNGAG 208
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BLAST of mRNA_P-littoralis_Contig171.14.1 vs. uniprot
Match: A0A6H5K9K2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9K2_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 3.650e-37
Identity = 78/121 (64.46%), Postives = 81/121 (66.94%), Query Frame = 1 
Query:    1 GTHYLCCIINLVDE------------ELYRVFVEEREKSKTVALTYPATIHKISPARGVAGWLLSRVWSHSRRHNIPDQEWDFIVQHNHSPSSAGAIERDPILKDMVGEVDARNDPVNGAG 327
            GTHYL CIIN+VDE            ELYRVF+EEREKS TVALTY   IHKIS ARG                    +EWDFIVQHNHSPSSAGAIERDPILKDMVGEVDARNDP  GAG
Sbjct:  123 GTHYLRCIINVVDECYGEGVKPISGQELYRVFMEEREKSNTVALTYLTEIHKISTARG--------------------KEWDFIVQHNHSPSSAGAIERDPILKDMVGEVDARNDPAAGAG 223
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BLAST of mRNA_P-littoralis_Contig171.14.1 vs. uniprot
Match: A0A6H5K7M3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7M3_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 5.300e-12
Identity = 43/118 (36.44%), Postives = 60/118 (50.85%), Query Frame = 1 
Query:    1 GTHYLCCIINLVDEELYR----VFVEEREKSKTVALTYPATIHKISPARG-----VAGWLLSRVWSHSRRHNIPDQEWDFIVQHNHSPSSAGAIERDPILKDMVGEVDARNDPVNGAG 327
            G H LC +IN VDE   R    +   +   +  +  TYP T   +S  R      +AGW+LS++ +H RRHNI + EW +IV  +  PS   A E +  L+ +  EV  RNDP    G
Sbjct:  108 GKHELCGVINQVDEVNLRRLGGLAENKLRDANVITPTYPRTQVALSIPRRRLLYYIAGWVLSKIVTHVRRHNIQEIEWMWIVDRHKYPSKRAAEENEMELRGVTEEVQRRNDPTRPRG 225
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig171.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KW14_9PHAE1.230e-6084.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9K2_9PHAE3.650e-3764.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7M3_9PHAE5.300e-1236.44Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig171contigP-littoralis_Contig171:80456..81076 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size329
Hectar predicted targeting categoryother localisation
Exons3
Cds size327
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789828.0526042-CDS-P-littoralis_Contig171:80455..804971680789828.0526042-CDS-P-littoralis_Contig171:80455..80497Pylaiella littoralis U1_48CDSP-littoralis_Contig171 80456..80497 +
1680789828.0619142-CDS-P-littoralis_Contig171:80775..808711680789828.0619142-CDS-P-littoralis_Contig171:80775..80871Pylaiella littoralis U1_48CDSP-littoralis_Contig171 80776..80871 +
1680789828.072703-CDS-P-littoralis_Contig171:80886..810751680789828.072703-CDS-P-littoralis_Contig171:80886..81075Pylaiella littoralis U1_48CDSP-littoralis_Contig171 80887..81075 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig171.14.1prot_P-littoralis_Contig171.14.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig171 80456..81075 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig171.14.1

>prot_P-littoralis_Contig171.14.1 ID=prot_P-littoralis_Contig171.14.1|Name=mRNA_P-littoralis_Contig171.14.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=109bp
GTHYLCCIINLVDEELYRVFVEEREKSKTVALTYPATIHKISPARGVAGW
LLSRVWSHSRRHNIPDQEWDFIVQHNHSPSSAGAIERDPILKDMVGEVDA
RNDPVNGAG
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mRNA from alignment at P-littoralis_Contig171:80456..81076+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig171.14.1 ID=mRNA_P-littoralis_Contig171.14.1|Name=mRNA_P-littoralis_Contig171.14.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=621bp|location=Sequence derived from alignment at P-littoralis_Contig171:80456..81076+ (Pylaiella littoralis U1_48)
GGCACACACTACCTGTGCTGCATCATCAACCTAGTGGATGAGGTACGCAC
GCTAGGCGGCACTCACCGAGTACAACTTACATGATTGTTGGTGTTTCGTC
TGCTTTGTTACGGATCAGGAAAAAAAATTTGTGTCCATAGTAATTTGTTC
ATATTGAATGACGGGGCGGGTTATTTATACGAGTGCGTCAACTATCTTAC
AAGCTCGTAGACCTCCTTAGTTCGCTCTAGTTCGCCTTAGGTTCTTCGAT
TTATATAGACTTTTGTTAGTTCCTCGTTCAATTGATATTCTTCAACTCGT
ATCCCCTCTGTGCACAACAGGAGCTATACCGCGTGTTCGTGGAAGAGAgG
GAGAAATCGAAAACGGTGGCTCTTACCTATCCTGCGACAATCCACAAGAT
CTCGCCGGCGCGTGGGAGGATCCTGTATTACGTTGCGGGGTGGTTGCTTA
GCAGGGTGTGGTCGCATAGCAGAAGACACAACATACCCGACCAGGAGTGG
GACTTCATTGTGCAGCACAATCATTCCCCCTCCAGTGCGGGCGCCATTGA
GAGAGATCCAATCCTAAAAGATATGGTTGGGGAGGTCGACGCGAGGAATG
ACCCCGTTAACGGTGCGGGTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig171:80456..81076+

>mRNA_P-littoralis_Contig171.14.1 ID=mRNA_P-littoralis_Contig171.14.1|Name=mRNA_P-littoralis_Contig171.14.1|organism=Pylaiella littoralis U1_48|type=CDS|length=327bp|location=Sequence derived from alignment at P-littoralis_Contig171:80456..81076+ (Pylaiella littoralis U1_48)
GGCACACACTACCTGTGCTGCATCATCAACCTAGTGGATGAGGAGCTATA
CCGCGTGTTCGTGGAAGAGAgGGAGAAATCGAAAACGGTGGCTCTTACCT
ATCCTGCGACAATCCACAAGATCTCGCCGGCGCGTGGGGTTGCGGGGTGG
TTGCTTAGCAGGGTGTGGTCGCATAGCAGAAGACACAACATACCCGACCA
GGAGTGGGACTTCATTGTGCAGCACAATCATTCCCCCTCCAGTGCGGGCG
CCATTGAGAGAGATCCAATCCTAAAAGATATGGTTGGGGAGGTCGACGCG
AGGAATGACCCCGTTAACGGTGCGGGT
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