mRNA_P-littoralis_Contig171.31.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig171.31.1
Unique NamemRNA_P-littoralis_Contig171.31.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig171.31.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig171contigP-littoralis_Contig171:98057..98651 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size595
Hectar predicted targeting categoryother localisation
Exons1
Cds size405
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789827.588312-UTR-P-littoralis_Contig171:98056..981061680789827.588312-UTR-P-littoralis_Contig171:98056..98106Pylaiella littoralis U1_48UTRP-littoralis_Contig171 98057..98106 +
1680789827.6103761-UTR-P-littoralis_Contig171:98511..986511680789827.6103761-UTR-P-littoralis_Contig171:98511..98651Pylaiella littoralis U1_48UTRP-littoralis_Contig171 98512..98651 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789827.6010725-CDS-P-littoralis_Contig171:98106..985111680789827.6010725-CDS-P-littoralis_Contig171:98106..98511Pylaiella littoralis U1_48CDSP-littoralis_Contig171 98107..98511 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig171.31.1prot_P-littoralis_Contig171.31.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig171 98107..98511 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig171.31.1

>prot_P-littoralis_Contig171.31.1 ID=prot_P-littoralis_Contig171.31.1|Name=mRNA_P-littoralis_Contig171.31.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=135bp
MCDVGSENRCHNRELDGNEWTDNGMLDGRVKEYQSRAWNGKQVGRWWYGK
RVGREQLMLTWDGKSGNIIQLGKGRDGKDGNEISRGFPVPAPSRPLFPMP
TFTAKSHEINAVQPADEMMSTVCPCVCVKHRTAA*
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mRNA from alignment at P-littoralis_Contig171:98057..98651+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig171.31.1 ID=mRNA_P-littoralis_Contig171.31.1|Name=mRNA_P-littoralis_Contig171.31.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=595bp|location=Sequence derived from alignment at P-littoralis_Contig171:98057..98651+ (Pylaiella littoralis U1_48)
CAACATAGAAATAGGAAGATGATGGGAGAAACCAGGGAGAAACAAGCGAA
ATGTGCGATGTGGGATCGGAGAACAGATGCCACAATCGGGAATTGGATGG
TAACGAGTGGACAGATAATGGCATGTTGGACGGACGGGTGAAAGAGTACC
AAAGTCGGGCATGGAATGGGAAGCAAGTGGGCAGATGGTGGTACGGGAAG
AGAGTTGGACGGGAGCAGTTGATGTTGACGTGGGACGGAAAAAGTGGGAA
CATAATTCAGCTCGGGAAAGGTCGGGACGGGAAGGATGGGAATGAAATAT
CACGCGGTTTTCCCGTTCCCGCACCGTCCCGACCACTATTTCCCATGCCA
ACCTTTACCGCGAAAAGCCATGAAATAAATGCGGTACAGCCTGCTGACGA
AATGATGTCAACCGTCTGTCCGTGTGTGTGTGTCAAACATCGAACAGCCG
CATAAGGAGATGCAATTTCGCAGCATATAACAAAAATGAATCACCCATGA
AAAAAAAAAAATCACCTGCGGTTTCTTATAAGAAGCGGTGCTTCCAAATA
TCCTGTTGGAATTGTACTTACAGAATATGTCGAATTCTGATGAGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig171:98057..98651+

>mRNA_P-littoralis_Contig171.31.1 ID=mRNA_P-littoralis_Contig171.31.1|Name=mRNA_P-littoralis_Contig171.31.1|organism=Pylaiella littoralis U1_48|type=CDS|length=405bp|location=Sequence derived from alignment at P-littoralis_Contig171:98057..98651+ (Pylaiella littoralis U1_48)
ATGTGCGATGTGGGATCGGAGAACAGATGCCACAATCGGGAATTGGATGG
TAACGAGTGGACAGATAATGGCATGTTGGACGGACGGGTGAAAGAGTACC
AAAGTCGGGCATGGAATGGGAAGCAAGTGGGCAGATGGTGGTACGGGAAG
AGAGTTGGACGGGAGCAGTTGATGTTGACGTGGGACGGAAAAAGTGGGAA
CATAATTCAGCTCGGGAAAGGTCGGGACGGGAAGGATGGGAATGAAATAT
CACGCGGTTTTCCCGTTCCCGCACCGTCCCGACCACTATTTCCCATGCCA
ACCTTTACCGCGAAAAGCCATGAAATAAATGCGGTACAGCCTGCTGACGA
AATGATGTCAACCGTCTGTCCGTGTGTGTGTGTCAAACATCGAACAGCCG
CATAA
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