mRNA_P-littoralis_Contig170.67.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig170.67.2
Unique NamemRNA_P-littoralis_Contig170.67.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig170.67.2 vs. uniprot
Match: A0A6H5JB99_9PHAE (Complex1_LYR_dom domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB99_9PHAE)

HSP 1 Score: 184 bits (468), Expect = 8.080e-53
Identity = 128/205 (62.44%), Postives = 135/205 (65.85%), Query Frame = 1 
Query:    1 PGYGGRMLRDAKEAFREG-HCANRGAAVLPLRAASTMEGAVDAKGR--------------GADTERGGPSPAXXXXXXXXXXXSLSGGGKVGR-------ALGLKEFMHRTRVLDLYRSILKRARAIEDKDVATEARRQFKSSRDETDPLKVQMLVADATNHLEAMQGSTRGAGSTS----GSWLDIQDPEDKRGRMGEGFPWQR 537
            PG GGRMLRD+ EAFREG H  N    V P R+ASTM+    A G               G    R   S  XXXXXXXXXXX    G            ALGLKEFMHR RVL+LYR ILKRARA+EDKDVA EARRQFKS   ETDPLKVQM+VADATNHLEAMQGSTRGAGS       SWLDI DPEDKRGR+GEGFPWQR
Sbjct:   10 PGCGGRMLRDSTEAFREGSHTKNARPRVAPFRSASTMQQCAAACGTESTAAVWSCVDPWTGRPRPRSSSSXXXXXXXXXXXXXXXXXGSXXXXXXXXXXXALGLKEFMHRARVLELYRGILKRARALEDKDVADEARRQFKSCLGETDPLKVQMMVADATNHLEAMQGSTRGAGSGGRGGGDSWLDIHDPEDKRGRVGEGFPWQR 214
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BLAST of mRNA_P-littoralis_Contig170.67.2 vs. uniprot
Match: D8LRC8_ECTSI (Complex1_LYR_dom domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRC8_ECTSI)

HSP 1 Score: 151 bits (381), Expect = 1.700e-41
Identity = 78/97 (80.41%), Postives = 84/97 (86.60%), Query Frame = 1 
Query:  256 MHRTRVLDLYRSILKRARAIEDKDVATEARRQFKSSRDETDPLKVQMLVADATNHLEAMQGSTRGAGSTSG----SWLDIQDPEDKRGRMGEGFPWQ 534
            MHR RVL+LYR ILKRARA+EDKDVA EAR+QFKS   ETDPLKVQM+VADATNHLEAMQGSTRGAGS  G    SWLDI DPEDKRGR+G+GFPWQ
Sbjct:    1 MHRARVLELYRGILKRARALEDKDVADEARKQFKSCLGETDPLKVQMMVADATNHLEAMQGSTRGAGSGGGGGDHSWLDIHDPEDKRGRVGKGFPWQ 97
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BLAST of mRNA_P-littoralis_Contig170.67.2 vs. uniprot
Match: A0A835YQF9_9STRA (Complex1_LYR_dom domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQF9_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 8.540e-20
Identity = 49/113 (43.36%), Postives = 74/113 (65.49%), Query Frame = 1 
Query:  223 KVGRALGLKEFMHRTRVLDLYRSILKRARAIEDK----DVATEARRQFKSSRDETDPLKVQMLVADATNHLEAMQGSTRGAGSTS----GSWLDIQDPEDKRGRMGEGFPWQR 537
            K  +   LK+F+ + +VL  YR +LK ARA+ED+    +VA + R ++++   ETD LK++ML+A+A  H++ +QG+            GSWLD+ DPED+RGR+G GFPWQR
Sbjct:   24 KTSKVPSLKDFVRKRQVLHSYRQLLKCARAMEDRPSGQEVAAQVRERYRAYAHETDSLKLRMLLAEAAQHIDTLQGTVARTSPDMPPPPGSWLDVDDPEDRRGRVGVGFPWQR 136
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BLAST of mRNA_P-littoralis_Contig170.67.2 vs. uniprot
Match: A0A482SDI4_9ARCH (LYR motif-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SDI4_9ARCH)

HSP 1 Score: 69.7 bits (169), Expect = 5.400e-11
Identity = 37/111 (33.33%), Postives = 66/111 (59.46%), Query Frame = 1 
Query:  226 VGRALGLKEFMHRTRVLDLYRSILKRARAIED----KDVATEARRQFKSSRDETDPLKVQMLVADATNHLEAMQG-----STRGAGSTSGSWLDIQDPEDKRGRMGEGFPW 531
            +G  L L+ F+ R +VL LYR++++ A  + D    +D+ ++ R  F+ +    D L ++ L+ +  ++L+ +QG     S   +    GSW++ +DP DKRGR+GEG+PW
Sbjct:    6 LGETLPLRFFIRRKQVLSLYRNLIRNATRVHDESVQRDIISQIRTDFRRNAHVQDSLVIKSLIQEGNSNLKILQGMAYKDSKAHSIRAQGSWIEQEDPVDKRGRVGEGWPW 116
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BLAST of mRNA_P-littoralis_Contig170.67.2 vs. uniprot
Match: A0A7S4JFV4_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JFV4_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 1.250e-7
Identity = 54/159 (33.96%), Postives = 72/159 (45.28%), Query Frame = 1 
Query:   82 LPLRAASTMEGAVDAK-GRGADTERGGPSPAXXXXXXXXXXXSLSGGGKVGRALGLKEFMHRTRVLDLYRSILKRARAIEDK----DVATEARRQFKSSRDETDPLKVQMLVADA---TNHLEAMQGSTRG-AGSTSGSWLDIQDPEDKRGRMGEGFPW 531
            LPL   S    A  A+ G G  T  GG  P+           S     ++G    LKEF+H+T V+  YR  L+    I D+        E RR F+     TD + + M VAD     N + +M G     +   S SWL+I D EDKRGR+G  +PW
Sbjct:   11 LPLHGGSRAWFATIARQGGGPRTRSGGILPSKEANDRSGKIKS-----RLGNLPSLKEFVHKTAVVRQYRDFLRAVVMIPDETFRQSALDEVRRTFRQHSFMTDKIAIDMEVADGGRRLNQVRSMVGYVDPRSNDDSDSWLNIDDKEDKRGRVGVEWPW 164
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BLAST of mRNA_P-littoralis_Contig170.67.2 vs. uniprot
Match: A0A8C3AAP9_CYCLU (LYR motif-containing protein 2 n=2 Tax=Cyclopterus lumpus TaxID=8103 RepID=A0A8C3AAP9_CYCLU)

HSP 1 Score: 57.0 bits (136), Expect = 1.660e-6
Identity = 36/93 (38.71%), Postives = 56/93 (60.22%), Query Frame = 1 
Query:  211 SGGGKVG------RALGLKEFMHRTRVLDLYRSILKRARAIED----KDVATEARRQFKSSRDETDPLKVQMLVADATNHLEAMQGSTRGAGS 459
            +G GK+G       AL LK+F+ R RVL +YR++++  R + D    K ++  AR +FK ++  TD   ++M++  A NHLE +QGS   AGS
Sbjct:   27 AGAGKMGVSRLPSAALSLKQFLQRQRVLGIYRNMIRTIRKVPDEADRKYLSDWARDEFKRNKSATDQDAIRMMITQANNHLEELQGSLALAGS 119
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BLAST of mRNA_P-littoralis_Contig170.67.2 vs. uniprot
Match: UPI001C03B48E (LYR motif-containing protein 2 n=1 Tax=Melanotaenia boesemani TaxID=1250792 RepID=UPI001C03B48E)

HSP 1 Score: 52.8 bits (125), Expect = 2.420e-5
Identity = 28/71 (39.44%), Postives = 46/71 (64.79%), Query Frame = 1 
Query:  235 ALGLKEFMHRTRVLDLYRSILKRARAIED----KDVATEARRQFKSSRDETDPLKVQMLVADATNHLEAMQ 435
            AL LK+F+HR RVL +YR++L+  R + D    K +   AR +F+ ++D T+   ++M++  A NHLE +Q
Sbjct:   10 ALSLKQFLHRQRVLGIYRTMLRTIRQVPDEADRKYLKDWAREEFRRNKDATNQDAIRMMITQARNHLETLQ 80
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig170.67.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5JB99_9PHAE8.080e-5362.44Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
D8LRC8_ECTSI1.700e-4180.41Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
A0A835YQF9_9STRA8.540e-2043.36Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
A0A482SDI4_9ARCH5.400e-1133.33LYR motif-containing protein n=1 Tax=archaeon TaxI... [more]
A0A7S4JFV4_9STRA1.250e-733.96Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A8C3AAP9_CYCLU1.660e-638.71LYR motif-containing protein 2 n=2 Tax=Cyclopterus... [more]
UPI001C03B48E2.420e-539.44LYR motif-containing protein 2 n=1 Tax=Melanotaeni... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig170contigP-littoralis_Contig170:303709..305820 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog215358.XP_010735612.1
Preferred nameLYRM2
PFAMsComplex1_LYR
Model size1244
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons2
Evalue4.68e-06
EggNOG OGs2E10R@1|root,2S8DG@2759|Eukaryota,3A72Y@33154|Opisthokonta,3BT70@33208|Metazoa,3DAVG@33213|Bilateria,48F6E@7711|Chordata,49CCT@7742|Vertebrata,4A4BY@7898|Actinopterygii
Ec32 ortholog descriptionComplex 1 LYR protein
Ec32 orthologEc-06_003010.1
DescriptionBelongs to the complex I LYR family
Cds size522
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789826.0834289-UTR-P-littoralis_Contig170:303708..3037261680789826.0834289-UTR-P-littoralis_Contig170:303708..303726Pylaiella littoralis U1_48UTRP-littoralis_Contig170 303709..303726 +
1680789826.1248634-UTR-P-littoralis_Contig170:305116..3058201680789826.1248634-UTR-P-littoralis_Contig170:305116..305820Pylaiella littoralis U1_48UTRP-littoralis_Contig170 305117..305820 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789826.1009333-CDS-P-littoralis_Contig170:303726..3040081680789826.1009333-CDS-P-littoralis_Contig170:303726..304008Pylaiella littoralis U1_48CDSP-littoralis_Contig170 303727..304008 +
1680789826.1148114-CDS-P-littoralis_Contig170:304876..3051161680789826.1148114-CDS-P-littoralis_Contig170:304876..305116Pylaiella littoralis U1_48CDSP-littoralis_Contig170 304877..305116 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig170.67.2prot_P-littoralis_Contig170.67.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig170 303727..305116 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig170.67.2

>prot_P-littoralis_Contig170.67.2 ID=prot_P-littoralis_Contig170.67.2|Name=mRNA_P-littoralis_Contig170.67.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=174bp
MLRDAKEAFREGHCANRGAAVLPLRAASTMEGAVDAKGRGADTERGGPSP
ARTRSSSSTSTSSLSGGGKVGRALGLKEFMHRTRVLDLYRSILKRARAIE
DKDVATEARRQFKSSRDETDPLKVQMLVADATNHLEAMQGSTRGAGSTSG
SWLDIQDPEDKRGRMGEGFPWQR*
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mRNA from alignment at P-littoralis_Contig170:303709..305820+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig170.67.2 ID=mRNA_P-littoralis_Contig170.67.2|Name=mRNA_P-littoralis_Contig170.67.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=2112bp|location=Sequence derived from alignment at P-littoralis_Contig170:303709..305820+ (Pylaiella littoralis U1_48)
CCAGGTTATGGCGGCCGGATGCTGCGCGACGCCAAGGAAGCATTCCGAGA
AGGGCATTGTGCGAACAGAGGAGCAGCAGTTTTACCCTTGCGCGCGGCCT
CGACGATGGAGGGGGCGGTCGACGCTAAAGGGCGAGGAGCAGATACGGAG
AGAGGTGGCCCTTCACCTGCCCGCACGCGGAGCAGCAGTAGCACCAGCAC
CAGCAGTTTAAGTGGCGGCGGGAAAGTGGGTAGGGCCCTCGGGCTGAAGG
AGTTCATGCACCGCACCCGAGTGTTGGATCTATACCGCAGTATCTTGAAG
GTGGGGAGAGAATGCGAAAACCTGGTGCTAGACCTTATGTGTGTGCCCGC
TGCCCTTTGTTCCGGGTGTGGGATGTAGTCAAATATGTCGGGTGCCTTGA
CATTCGGCGAAGGGTGGTTGAATATATGGCAAGCACTCGAGCGCACATCC
CACCAGAGTTTTCAGCAGCTGCCATTTGGTATGATACGTTTGTCTTCTTG
TTGGCCTGAAGTGGTGGTTTTTATGTCAACGGCAATCCGGTGCTCCTGGA
TCATGAGTCGCTTTGAAACTTCTGTAACTAAAGGTACACCATGCATGCTG
TCTACCCCTGCTGCGATCGACGAGAGGTGATCCACTCAAGTTGTGGTTCA
GATGGGAGTCGGCTTGGCCAGCAGCCTTTTTGGAAATACAGAGGTACCCG
TAAGCCACCCCTCCTCCCCATTCCTCGACAAATGCCCGCGGCGAGTCTAG
AGAATGGGTGTGCTTTTTGTCTTAGCTGTCTTCCGCCCCGCCTGAAGTCT
GAGCTGGGCTTGAACTTGGCACTCGGCGCTCGTCTCTGTTGGTATGTGCA
CGCGCGTTCCCCGGCGAAAGGTGTGCCCGCACCAGAGTGAAGCCTAGATG
AAGATGAAATGCACGATTGGGTCGACCCTTGTGCTACGAATTTGCCCAGT
CTTTGTTTTATAATCTGCGCTTTTTGTCTGGCCTACTCTCTCCAAACCCC
TCCAATTCACCGCCCGGTAAAATCGAGTGCATGCGGTATTCGTGACAGGC
CACTCCTGCACTGCGCCCCCCTGCTGACAGCCGTTCGTGTGTATATCGTT
TGAACCGGCTCATTTTCGTTTCGTGTGGGATGCGTCTACGTTGACGACGA
CGGTTGTGTGAAGCACAGCGGGCTCGAGCCATCGAGGACAAAGACGTAGC
TACCGAGGCAAGAAGACAGTTCAAGTCTTCCCGCGATGAGACAGACCCTC
TAAAGGTCCAGATGCTCGTTGCCGACGCCACGAACCACCTCGAAGCCATG
CAGGGCTCCACGAGGGGGGCGGGGTCTACTAGCGGATCATGGCTAGACAT
TCAGGACCCGGAGGACAAGAGAGGGAGAATGGGAGAGGGGTTTCCTTGGC
AACGGTAGTTGTATGCTCGAGGGGGGCGGGGCTACCGGGTACGCCTTGAT
CGAGGGAAGCTGTATGCACCCCTGGTCACGTCATTTTCAGGGCGAACGTT
GTTTAGCAGGAGGACAGGGTTCATTCTACGACACACAGAGTAAACGCAGC
ACAGCTTCTGACGCACAGCAAAAGCTGGATGTTTTTTTGGTGCTTTACAC
TCCGTCCTTATTATGAATTACCATGCTGCACTTGCTGATTGCGCTCGACC
GATGGGCGTCTAGCTACGCGGTGGGTGGCACGCAGTTTCCTGACTGTTCA
AAACGCCTTTCGGCGAAATTTCAATTCGAGACGATGGAAGTTCCTTCAAG
CATGCACTTTTCGAAAACAGTCTACTTTTCTGACGCAGAAAATGCCCCGG
ATGGATACCTTCCAGCAGAGGTATTCAGAGCCTTTTAAGACTGTGTCGAA
AGCTGGTTGCTACATCCGGTAGTAGGTTGGTGAATCTAGATTTTCATCTC
ACTTGCAAATGTTCACTCAGCAAATCACGATGATTGCACCCCCCCCCTCT
GAGCGCTCACTCGTTCTGTGGTCCTACTGCTTCGGGCTGACCGTATTCCC
GTAGTCTACGCGAGGTTGGTTTCGGCGGTGGTTTCAAAGTCGCGAAGGAA
AATATCTCTCCGGGGTCATATCGACGGTAGGGAGATCTATGTAAAAATCA
GCGTGTACCCAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig170:303709..305820+

>mRNA_P-littoralis_Contig170.67.2 ID=mRNA_P-littoralis_Contig170.67.2|Name=mRNA_P-littoralis_Contig170.67.2|organism=Pylaiella littoralis U1_48|type=CDS|length=522bp|location=Sequence derived from alignment at P-littoralis_Contig170:303709..305820+ (Pylaiella littoralis U1_48)
ATGCTGCGCGACGCCAAGGAAGCATTCCGAGAAGGGCATTGTGCGAACAG
AGGAGCAGCAGTTTTACCCTTGCGCGCGGCCTCGACGATGGAGGGGGCGG
TCGACGCTAAAGGGCGAGGAGCAGATACGGAGAGAGGTGGCCCTTCACCT
GCCCGCACGCGGAGCAGCAGTAGCACCAGCACCAGCAGTTTAAGTGGCGG
CGGGAAAGTGGGTAGGGCCCTCGGGCTGAAGGAGTTCATGCACCGCACCC
GAGTGTTGGATCTATACCGCAGTATCTTGAAGCGGGCTCGAGCCATCGAG
GACAAAGACGTAGCTACCGAGGCAAGAAGACAGTTCAAGTCTTCCCGCGA
TGAGACAGACCCTCTAAAGGTCCAGATGCTCGTTGCCGACGCCACGAACC
ACCTCGAAGCCATGCAGGGCTCCACGAGGGGGGCGGGGTCTACTAGCGGA
TCATGGCTAGACATTCAGGACCCGGAGGACAAGAGAGGGAGAATGGGAGA
GGGGTTTCCTTGGCAACGGTAG
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