mRNA_P-littoralis_Contig170.64.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig170.64.2
Unique NamemRNA_P-littoralis_Contig170.64.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig170.64.2 vs. uniprot
Match: A0A6H5JH19_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH19_9PHAE)

HSP 1 Score: 752 bits (1942), Expect = 1.700e-257
Identity = 477/757 (63.01%), Postives = 523/757 (69.09%), Query Frame = 2 
Query:   35 MEYERALFRVYDKSMEGFHSPGARSACNLLMKIFLVVSAGLFATLVLFHHQFVNNPGCLAPLLEAAALREGVLIPPDPSPSASAGGFTGTVTANNTLGEIDASPGGVIVP-PSGATGEHEDEED------------------------ENHPTKIQLPSGNWIPYDVMIGVSIGDGSVNPRGRHRWWGLRGAKNDGKRVDKGDGSGGRRKTAEDGEGVGGAEGXXXXXXXXXXXXXXXXXXXXXXX-------------------------------GSSAGAATE----TEGNSSAAG------------------AVNGTEFYADYTFAFEPLVLLLPGKIQESHDFQWVNFTIEPSVCLREAGFMSRLLAATVVGYDEIVANMFMVSVRSKGLLKNTQTGGEWIWSTDSKPSSSGFMRFMSAVSFKLQVVLRSLIAFVLMSTVTAMTVRTLLSSGVVIMFPMVMLMERMGLQGVDMHHVLALSYPWLGLPIEHLRNQNKPAGPFIMGHIMQVVVFYTVYNACLLAWSFWLYGKTMTSSLQMWLYGMVMLYEYFALIFVRARSSIVFFSRTAALSFVAFHVYFYHFQMGFYGLAAWCGFFGMFAVKLYVLQAIELPAYTSGEISQDAPRAHFVELPWPTWGAALPPMWSLFIPPNASTTGVYVDDVPRRPDSGPDGGGAGDGAQLDGSPGTVAAEAVGGSGRGXXXQGEREEHGIPPARGASERGGARARXXXRARVGGAPRTEQER-PLVGGDR 2068
            MEYERALFRVYDKSMEGFHS   RSACNLL K+FLV SAGLFA LVL HHQFVN PGCLAPLLE AA REGVLI P             ++TAN TLGEID  P GVIV  P+ A G                               + HP+KIQLPSGNW+PYDVM+GVSIG+G                                R+TA+       AEGXXXXXXXXXXXXXXXXXXXXXXX                               G    AA E    +EG   A+                   AVN TEF ADYTFAFEP+VLLLP KIQE H F+WVNFT+EPSVCLREAGF+SRLLAATV+GYDEI+ NMFM S+RSKGLLKNT+TGGEW+WS DS PSS G MR +SAV+FK QVV+RSL+AF+LMSTVTA+TVRTLLSSGVVI+FP+VML+ERMGLQGVDM  +LALSYPWLGLPIEHLRN+NKP GPFIMGH+MQ+VVFYTVYNACLLAWS+WLYGKTMT+SLQ+WLYGMVMLYEYFALIFVRARSSIVFFSRTAALSFVAFHVYFYHFQMGF+GLAAW  F GMF+VKLYVLQAIELPAYTSGE+SQDAPRAHFVELPWPTWGAALPPMWSLFIPPNAS+ GVY D VP RPD     GG                E+  G G     +GE +EH IP  RGA+  GGA   XXX     G  RTEQER PLVGGDR
Sbjct:    1 MEYERALFRVYDKSMEGFHSREVRSACNLLQKLFLVASAGLFAALVLLHHQFVNKPGCLAPLLEEAASREGVLILPT----------VRSITANTTLGEIDTDPEGVIVGGPNQAGGXXXXXXXXXXXXGGXXXXXXXXXXXXXXXXXDRHPSKIQLPSGNWMPYDVMVGVSIGNGGXXXXXXXXXXXXXXXXXXXXXXXXXXXX--SRRTAD-------AEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRGGGQDEAAVEGAEGSEGGGQASSNDTAVIGAGGGEIGMNVSAVNDTEFTADYTFAFEPIVLLLPDKIQEGHGFKWVNFTMEPSVCLREAGFVSRLLAATVIGYDEIMVNMFMYSMRSKGLLKNTKTGGEWMWSRDSDPSS-GLMRVLSAVAFKSQVVVRSLMAFLLMSTVTALTVRTLLSSGVVIIFPVVMLLERMGLQGVDMQQMLALSYPWLGLPIEHLRNRNKPVGPFIMGHVMQMVVFYTVYNACLLAWSYWLYGKTMTTSLQVWLYGMVMLYEYFALIFVRARSSIVFFSRTAALSFVAFHVYFYHFQMGFFGLAAWSSFLGMFSVKLYVLQAIELPAYTSGEVSQDAPRAHFVELPWPTWGAALPPMWSLFIPPNASSVGVYGDAVPDRPD-----GGXXXXXXXXXXXXXXXXESNDGEGS----RGEGQEHRIPRTRGAAVGGGAXXXXXXX--XXGLARTEQERRPLVGGDR 726
[Close]
BLAST of mRNA_P-littoralis_Contig170.64.2 vs. uniprot
Match: D8LRD0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRD0_ECTSI)

HSP 1 Score: 349 bits (895), Expect = 6.390e-107
Identity = 225/364 (61.81%), Postives = 248/364 (68.13%), Query Frame = 2 
Query: 1001 QTGGEWIWSTDSKPSSSGFMRFMSAVSFKLQVVLRSLIAFVLMSTVTAMTVRTLLSSGVVIMFPMVMLMERMGLQGVDMHHVLALSYPWLGLPIEHLRNQNKPAGPFIMGHIMQVVVFYTVYNACLLAWSFWLYGKTMTSSLQMWLYGMVMLYEYFALIFVRARSSIVFFSRTAALSFVAFHVYFYH-------FQMGFYGLAAWCGFFGMFAVKLYVLQAIELPAYTSGEISQDAPRAHFVELPWPTWGAALPPMWSLFIPPNASTTGVYVDDVPRRPDSGPDGGGAGDGAQLDGSPGTVAAEAVGGSGRGXXXQGEREEHGIPPARGASERGGARARXXXRARVGGAPRTEQERPL-VGGDR 2068
            +TGGEW+WS D  PSS G MR +SAV+FK QV++RSL+AFVLMSTVTA+TVRTLLSSGVVIMFPMVML+ERMGLQGVDM  +LALSYPWLGLPIEHLRN+NKP GPFIMGHIMQ+VVFYTVYNACLLAWS+WLYGKTMT+SLQ    G       F       RSS      T++ S        +        FQ GF G        G F       +AIELPAYTSGE+SQDAPRAHFVELPWPTWGAALPPMWSLFIPPNAS+ GVY D VP RPD G D                   EA  G G     +GE +EH IP ARGA+ERGGARA XXX        RTEQER L VGGDR
Sbjct:   18 KTGGEWMWSRDPDPSS-GLMRVLSAVAFKSQVLVRSLVAFVLMSTVTALTVRTLLSSGVVIMFPMVMLLERMGLQGVDMQQMLALSYPWLGLPIEHLRNRNKPVGPFIMGHIMQMVVFYTVYNACLLAWSYWLYGKTMTTSLQGGSTGWGSSTNTF-------RSSFWGGGPTSSSSPGRPRCPSWRSPCTSTTFQRGFSGWGRGPPSPGWFPFSSTWWKAIELPAYTSGEVSQDAPRAHFVELPWPTWGAALPPMWSLFIPPNASSVGVYGDAVPDRPDGGGDAX-----XXXXXXXXXXXXEANDGEGS----RGEGQEHRIPRARGAAERGGARAXXXXXXXX--LARTEQERRLLVGGDR 362
[Close]
BLAST of mRNA_P-littoralis_Contig170.64.2 vs. uniprot
Match: D8LRC9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRC9_ECTSI)

HSP 1 Score: 276 bits (706), Expect = 9.010e-82
Identity = 172/330 (52.12%), Postives = 185/330 (56.06%), Query Frame = 2 
Query:   35 MEYERALFRVYDKSMEGFHSPGARSACNLLMKIFLVVSAGLFATLVLFHHQFVNNPGCLAPLLEAAALREGVLIPPDPSPSASAGGFTGTVTANNTLGEIDASPGGVIVPPSGATGEHEDEEDE-----------NHPTKIQLPSGNWIPYDVMIGVSIGDGSVNPRGRHRWWGLRGAKNDGKRVDKGDGSGGRRKTAEDGEGVGGAEGXXXXXXXXXXXXXXXXXXXXXXXGSSAGAATETEGNSSAAGAVNGTEFYADYTFAFEPLVLLLPGKIQESHDFQWVNFTIEPSVCLREAGFMSRLLAATVVGYDEIVANMFMVSVRSKGLL 991
            MEYERALFRVYDKSMEGFHS G RSACNLL K+ LV SAGLFA L L HHQFVN PGCLAPLLE AA REGVLI P             +VTAN TLGEID  P GVIV      G                    HP+KIQLPSGNW+PYDVM   + G                                    +AE GEG G A                             G   E   N SA   VN T F ADYTFAFEP+VLLLP KIQE H F+WVNFT+EPSVCLREAGF+SRLLAATV+GYDEI+ NMFM S+RSKGLL
Sbjct:    1 MEYERALFRVYDKSMEGFHSRGVRSACNLLQKLVLVASAGLFAALFLLHHQFVNKPGCLAPLLEEAASREGVLILPT----------VRSVTANTTLGEIDTDPEGVIVGGPNQAGXXXXXXXXXXXXXXXXXXXRHPSKIQLPSGNWVPYDVMDEAAAG------------------------------------SAEGGEGGGEASSNDTAVVD--------------------GXXGEIGVNVSA---VNDTGFTADYTFAFEPIVLLLPDKIQEGHGFKWVNFTMEPSVCLREAGFVSRLLAATVIGYDEIMVNMFMYSMRSKGLL 261
[Close]
BLAST of mRNA_P-littoralis_Contig170.64.2 vs. uniprot
Match: A0A7S4DCY7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DCY7_HETAK)

HSP 1 Score: 272 bits (695), Expect = 4.960e-77
Identity = 150/345 (43.48%), Postives = 214/345 (62.03%), Query Frame = 2 
Query:  764 TEFYADYTFAFEPLVLLLPGKIQESHDFQWVNFTIEPSVCLREAGFMSRLLAATVVGYDEIVANMFMVSVRSKGLLKNTQTGGEWIWSTDSKPSSSGFMRFMSAVSFKLQVVLRSLIAFVLMSTVTAMTVRTLLSSGVVIMFPMVMLMERMGLQGVDMHHVLALSYPWLGLPIEHLRNQNKPAGPFIMGHIMQVVVFYTVYNACLLAWSFWLYGKTMTSSLQMWLYGMVMLYEYFALIFVRARSSIVFFSRTAALSFVAFHVYFYHFQMGFYGLAAWCGFFGMFAVKLYVLQAIELPAYTSGEISQDAPRAHFVELPWPTWGAALPPMWSLFIPPNASTTGVYVD 1798
            TEF A Y F+    ++L+ G ++     + +N T+E + C     F   L+ AT  G+D  V NM M S+ S GLLKN  T  EW W     P + G+   +  ++ K   +L SL+AF LMS+VTA+ VR L+SSGVV MFP+   +ER GL+G +   +L LSYPWLG P+E L+ + KP GPF+ GH+++VVV+Y +Y A  +AW+ WLYGK+  + L++WL+G +ML+EY+ ++F+R+R   +FF R   L FV +H+YFY F  G++ L A   F  M    L+ LQ +E PA   GE+S  APRA + ELPWP   + L P W+LF+PP  +  GVY D
Sbjct:  146 TEFDAKYEFSVSFPLMLMDGDLRSKLGVRELNITLEHT-CFGATPFDRFLVLAT--GHDTPVINMLMFSLHSDGLLKNMFTKEEWSWGKGELPPAGGYSPLLR-LALKPLALLSSLLAFFLMSSVTALIVRVLISSGVVFMFPLFSALERAGLRGFN-QRLLRLSYPWLGAPMEELQRRGKPTGPFVAGHLLKVVVYYALYEAAQVAWAQWLYGKSTPAGLEVWLFGSMMLWEYYGMLFLRSRGGSLFFPRLCGLYFVGYHLYFYSFNYGYFDLLALAHFCLMLHAMLFTLQHLEAPALLRGEVSPAAPRAVYTELPWPAHPSELAPEWTLFVPPAEAVRGVYDD 485
[Close]
BLAST of mRNA_P-littoralis_Contig170.64.2 vs. uniprot
Match: A0A835YR56_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR56_9STRA)

HSP 1 Score: 242 bits (618), Expect = 2.740e-69
Identity = 125/238 (52.52%), Postives = 168/238 (70.59%), Query Frame = 2 
Query: 1103 RSLIAFVLMSTVTAMTVRTLLSSGVVIMFPMVMLMERMGLQGVDMHHVLALSYPWLGLPIEHLRNQNKPAGPFIMGHIMQVVVFYTVYNACLLAWSFWLYGKTMTSSLQMWLYGMVMLYEYFALIFVRARSSIVFFSRTAALSFVAFHVYFYHFQMGFYGLAAWCGFFGMFAVKLYVLQAIELPAYTSGEISQDAPRAHFVELPWPTWGAALPPMWSLFIPPNASTTGVYVDDVPRRP 1816
            R+L+ F ++S+VTA+ VR LLSSGV  MFP   L+ RMG   +D   VLA SYPW+G P++ LR QNKP GPFIM H++QVVV+YT+YNA  +AW+ WLY K+  + L+M L+GM++L+EY+ L+FVR+ + I FF R   L F A+H+YF+   MG++GLAA   F  +    LY +  +E+PA T GEIS + PRA FVELPWP+WGA+LPP W+LF+P N    GVY +  P RP
Sbjct:   15 RALLTFAVLSSVTALVVRMLLSSGVAAMFPFFALLRRMGFTDLD-DRVLAASYPWIGRPMQALRRQNKPTGPFIMAHLVQVVVYYTLYNAVQVAWTMWLYDKS--AQLEMSLFGMMLLWEYYCLVFVRSAAGIAFFPRVTMLYFTAYHMYFFMNPMGYFGLAALSTFLLVLHAMLYTVTDLEVPALTRGEISAEHPRACFVELPWPSWGASLPPTWTLFLPTNTRVRGVYENIRPSRP 249
[Close]
BLAST of mRNA_P-littoralis_Contig170.64.2 vs. uniprot
Match: A0A7S3Y6C3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6C3_HETAK)

HSP 1 Score: 233 bits (595), Expect = 1.840e-65
Identity = 121/265 (45.66%), Postives = 172/265 (64.91%), Query Frame = 2 
Query: 1004 TGGEWIWSTDSKPSSSGFMRFMSAVSFKLQVVLRSLIAFVLMSTVTAMTVRTLLSSGVVIMFPMVMLMERMGLQGVDMHHVLALSYPWLGLPIEHLRNQNKPAGPFIMGHIMQVVVFYTVYNACLLAWSFWLYGKTMTSSLQMWLYGMVMLYEYFALIFVRARSSIVFFSRTAALSFVAFHVYFYHFQMGFYGLAAWCGFFGMFAVKLYVLQAIELPAYTSGEISQDAPRAHFVELPWPTWGAALPPMWSLFIPPNASTTGVYVD 1798
            T  EW W     P + G+   +  ++ K   +L SL+AF LMS+VTA+ VR L+SSGVV MFP+   +ER GL+G +   +L LSYPWLG P+E L+ + KP GPF+ GH+++VVV+Y +Y A  +AW+ WLYGK+  + L++WL+G +ML+EY+ ++F+R+R   +FF R   L FV +H+YFY F  G++ L A   F  M    L+ LQ +E PA   GE+S  APRA + ELPWP   + L P W+LF+PP  +  GVY D
Sbjct:   35 TKEEWSWGKGELPPAGGYSPLLR-LALKPLALLSSLLAFFLMSSVTALIVRVLISSGVVFMFPLFSALERAGLRGFN-QRLLRLSYPWLGAPMEELQRRGKPTGPFVAGHLLKVVVYYALYEAAQVAWAQWLYGKSTPAGLEVWLFGSMMLWEYYGMLFLRSRGGSLFFPRLCGLYFVGYHLYFYSFNYGYFDLLALAHFCLMLHAMLFTLQHLEAPALLRGEVSPAAPRAVYTELPWPAHPSELAPEWTLFVPPAEAVRGVYDD 297
[Close]
BLAST of mRNA_P-littoralis_Contig170.64.2 vs. uniprot
Match: A0A7S2AJJ9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AJJ9_9STRA)

HSP 1 Score: 233 bits (595), Expect = 2.340e-65
Identity = 125/293 (42.66%), Postives = 181/293 (61.77%), Query Frame = 2 
Query:  932 GYDEIVANMFMVSVRSKGLLKNTQTGGEWIWSTDSKP----SSSGFMRFMSAVSFKLQVVLRSLIAFVLMSTVTAMTVRTLLSSGVVIMFPMVMLMERMGLQGVDMHHVLALSYPWLGLPIEHLRNQNKPAGPFIMGHIMQVVVFYTVYNACLLAWSFWLYGKTMTSSLQMWLYGMVMLYEYFALIFVRARSSIVFFSRTAALSFVAFHVYFYHFQMGFYGLAAWCGFFGMFAVKLYVLQAIELPAYTSGEISQDAPRAHFVELPWPTWGAALPPMWSLFIPPNASTTGVYVD 1798
            G+D I+    M SV   G++    T   W W+  +      +  G + ++ A   K  VVLRSL+AF   STVTA+ VR L+SSGVVIMFP++  +  +G   +DM  +L +SYPWLGLP+E LR QNKP  P I+ H+++VVV Y++Y AC LAW  WLY K + S L++W+YG+VM++EY+++I++R+ ++I F  R   + F+AFH Y Y    GFY +A    F  M    ++ L  +E+PA +  E+S D PRA +  LPW  W A LPP W+LF+P N+    +Y D
Sbjct:    2 GWDTIIITQIMTSVADSGMVARLATKEAWSWTESTLALGYQNKRGVLEYLKA---KAIVVLRSLLAFFFTSTVTALIVRMLISSGVVIMFPLLTGLRYLGCSAIDMQ-ILNMSYPWLGLPVERLRAQNKPVTPLIVAHMVRVVVLYSMYEACQLAWGIWLYDKPLPSGLELWIYGIVMIWEYYSMIYLRSAAAIYFLPRFTLVYFIAFHFYLYGTAYGFYPVALLTMFLAMCHSLVFCLTRLEVPASSRLEVSFDQPRALYTALPWTAWSAMLPPSWTLFLPLNSRAQNIYDD 290
[Close]
BLAST of mRNA_P-littoralis_Contig170.64.2 vs. uniprot
Match: A0A7S0XCD7_9STRA (Hypothetical protein (Fragment) n=2 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XCD7_9STRA)

HSP 1 Score: 205 bits (521), Expect = 2.410e-53
Identity = 116/338 (34.32%), Postives = 200/338 (59.17%), Query Frame = 2 
Query:  782 YTFAFEPLVLLLPGKIQESHDFQWVNFTIEPSVCLREAGFMSRLLAATVVGYDEIVANMFMVSVRSKGLLKNTQTGGEWIWS-TDSKPSSSGFMRFMSAVSFKLQVVLRSLIAFVLMSTVTAMTVRTLLSSGVVIMFPMVMLMERMGLQGVDMHHVLALSYPWLGLPIEHLRNQNKPAGPFIMGHIMQVVVFYTVYNACLLAWSFWLYGKTMTSSLQMWLYGMVMLYEYFALIFVRARSSIVFFSRTAALSFVAFHVYFYHFQMGFYGLAAWCGFFGMFAVKLYVLQAIELPAYTSGEISQDAPRAHFVELPWPTWGAALPPMWSLFIPPNASTTGVY 1792
            Y FA+   VL L  +I+++HDF+  N T+  S C  +   MS +    + G D I+ N    +  +   +  T  G    W+  D+K  +S ++     ++F+L V+  S  +F ++ST++A+ VR L+SSGVV++FP+  +++R    G+    +++LSYPW+G+PIE LR++N+   PFI+ HI ++VV+Y +Y A  LA+S W Y  +     ++W++ ++ML EY+++I++R+R SI+ F R    +++ +H+Y Y    GF+ LA    F  M    ++ ++  ELPAY+SG +S DAPR     +PWP W  A+ P ++LF P +  +  +Y
Sbjct:   44 YEFAYSITVLSLNEEIRKTHDFEVFNITLSGSECFGDIITMSLI---PLGGIDTIIRNFIQSTYSNHDGVIITSAGDYMTWNKNDNKTINSKYIS--KYITFRLMVLFVSFFSFFMLSTISALLVRILISSGVVLLFPLFWIVQRFTSHGISWR-IISLSYPWIGIPIEVLRSRNQSIEPFIIAHICRIVVYYVLYEAAQLAFSVWFYNDSRPGQKELWIFAIMMLLEYYSMIYLRSRGSIILFPRVILSTYMIYHIYVYLHPNGFHLLALLVMFMFMAWNMIFCVRKFELPAYSSGHVSIDAPRVLHNRVPWPMWSIAIAPDFTLFWPLDHQSMTIY 375
[Close]
BLAST of mRNA_P-littoralis_Contig170.64.2 vs. uniprot
Match: A0A7S2SN08_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2SN08_9STRA)

HSP 1 Score: 199 bits (507), Expect = 8.400e-51
Identity = 120/355 (33.80%), Postives = 187/355 (52.68%), Query Frame = 2 
Query:  749 GAVNGTEFYADYTFAFEPLVLLLPGKIQESHDFQWVNFTIEPSVCLREAGFMSRL---LAATVVGYDEIVANMFMVSVRSKGLLKNTQTGGEWIWSTDSKPSSS-GFMRFMSAVSFKLQVVLRSLIAFVLMSTVTAMTVRTLLSSGVVIMFPMVMLMERMGLQGVDMHHVLALSYPWLGLPIEHLRNQNKPAGPFIMGHIMQVVVFYTVYNACLLAWSFWLYGKTMTSSLQMWLYGMVMLYEYFALIFVRARSSIVFFSRTAALSFVAFHVYFYHFQMGFYGLAAWCGFFGMFAVKLYVLQAIELPAYTSGEISQDAPRAHFVELPWPTWGAALPPMWSLFIPPNASTTGVYVDD 1801
            G+ +   F  DY F+    V  +   + + +     N ++        + ++      L     G D IV N  M + +  G LKN  T  + IWS D +      +  F  AV  KL     S+++F L+S +TA+ VR L++SGV I FP+  L +R+GL       +L+LSYPWLG  IE L   N+ + P +  H+  V+++YT+Y AC + WSFWLY K+M +     ++G+VM+ EYF++IF R+  +I FF R     ++AFH+YFY    GF  +A    +       +Y L+  E+ A+  G +S + PR+ + E+P P W   LPP+WS+F P N S   +Y D+
Sbjct:  141 GSASEKNFAVDYEFSCSSSVARMNSSLYKVYGISTYNVSLHADCLAPSSPYIRSFWVNLIRVAFGVDAIVVNQAMYAFQCDGYLKNLAT--KEIWSWDKRDFDYLNYGLFRKAVR-KLAAFFMSILSFALVSQITALLVRVLVTSGVAITFPLFNLFQRLGLNQ-HRRQLLSLSYPWLGAQIELLHTSNQSSNPLVSAHLFNVLLYYTMYEACQIVWSFWLYNKSMPAGQMQQIFGLVMICEYFSMIFARSLLTIQFFPRVMMFYYIAFHLYFYLVPYGFTSMATITWYAACLHAMVYCLRYHEVKAFQRGRVSFEQPRSLYSEIPQPQWNMLLPPLWSMFYPLNRSQRSIYDDE 491
[Close]
BLAST of mRNA_P-littoralis_Contig170.64.2 vs. uniprot
Match: B8BR68_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BR68_THAPS)

HSP 1 Score: 197 bits (502), Expect = 3.200e-48
Identity = 124/364 (34.07%), Postives = 194/364 (53.30%), Query Frame = 2 
Query:  782 YTFAFEPLVLLLPGKIQESHDFQWVNFTIEPSVCLREA---GFMSRL-----LAATVVGYDEIVANMFMVSVRS------KGLLKNTQTGGEWIWSTDSKPSSSGFMRFMSAVSFKLQVVLRSLIAFVLMSTVTAMTVRTLLSSGVVIMFPMVMLMERMGLQGVDMHHVLALSYPWLGLPIEHLRNQN-KPAGPFIMGHIMQVVVFYTVYNACLLAWSFWLYGKTMTSSLQMWLYGMVMLYEYFALIFVRARSSIVFFSRTAALSFVAFHVYFYHFQMGFYGLAAWCGFFGMFAVKLYVLQAIELPAYTSGEISQDAPRAHFVELPWPTWGAALPPMWSLFIPPNASTTGVY-----VDDVPRR 1813
            Y +A +  +L L  K    H+   VN T+    CL      G +S L       + + G D I+ N  M  VRS       G +++ +T   W W  +   +      F+  V  K+ V+L SL+AF L+++VT++ VR L SSGVV+MFP+       G+ G D   +LALSYPW+G     + N+   P    +  H+ ++V++Y +Y AC  AWS  LY K++  +L +W+YG  M++EYF+++FVR+  S+ FF R   + F  +HVYFY    G++ +A    F  M    LY + A+ELP    G IS + PR  + +L WP W + +P  W++F+PPN+  T ++      +DVP +
Sbjct:  599 YRYAIDDALLYLDEKSAYLHNITIVNVTVTER-CLSSGSDDGNLSMLETIGEFLSQIYGMDSIIINQLMYGVRSPDGSFQSGHVQSMETKERWGWRKEQLDAYENGS-FVELVLKKIGVLLMSLLAFFLITSVTSLIVRVLTSSGVVLMFPLFTCFRSFGMPGAD-ERILALSYPWIGSARRAVANEQIHPQTHLVWAHVAKIVLYYVMYEACQAAWSVVLYAKSIPEALPVWIYGFAMIWEYFSMVFVRSAMSVHFFPRITLIYFALYHVYFYSVPYGYFDVALIPLFLFMTHAMLYTMLALELPNSARGTISVECPREVYNKLSWPEWSSQVPAEWTMFLPPNSRQTPIHDRVESSNDVPTQ 959
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig170.64.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JH19_9PHAE1.700e-25763.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRD0_ECTSI6.390e-10761.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LRC9_ECTSI9.010e-8252.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S4DCY7_HETAK4.960e-7743.48Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A835YR56_9STRA2.740e-6952.52Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A7S3Y6C3_HETAK1.840e-6545.66Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2AJJ9_9STRA2.340e-6542.66Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S0XCD7_9STRA2.410e-5334.32Hypothetical protein (Fragment) n=2 Tax=Chromulina... [more]
A0A7S2SN08_9STRA8.400e-5133.80Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
B8BR68_THAPS3.200e-4834.07Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig170contigP-littoralis_Contig170:289719..299615 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog35128.Thaps20868
Model size3208
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categorysignal anchor
Exons9
Evalue3e-50
EggNOG OGsKOG2092@1|root,KOG2092@2759|Eukaryota,2XG4I@2836|Bacillariophyta
Descriptionpositive regulation of ERAD pathway
Cds size2160
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig170.64.2prot_P-littoralis_Contig170.64.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig170 290733..299581 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789825.7714553-UTR-P-littoralis_Contig170:289718..2907321680789825.7714553-UTR-P-littoralis_Contig170:289718..290732Pylaiella littoralis U1_48UTRP-littoralis_Contig170 289719..290732 -
1680789825.872867-UTR-P-littoralis_Contig170:299581..2996151680789825.872867-UTR-P-littoralis_Contig170:299581..299615Pylaiella littoralis U1_48UTRP-littoralis_Contig170 299582..299615 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789825.7838397-CDS-P-littoralis_Contig170:290732..2912111680789825.7838397-CDS-P-littoralis_Contig170:290732..291211Pylaiella littoralis U1_48CDSP-littoralis_Contig170 290733..291211 -
1680789825.7929761-CDS-P-littoralis_Contig170:291746..2920321680789825.7929761-CDS-P-littoralis_Contig170:291746..292032Pylaiella littoralis U1_48CDSP-littoralis_Contig170 291747..292032 -
1680789825.8018541-CDS-P-littoralis_Contig170:292447..2925341680789825.8018541-CDS-P-littoralis_Contig170:292447..292534Pylaiella littoralis U1_48CDSP-littoralis_Contig170 292448..292534 -
1680789825.8126519-CDS-P-littoralis_Contig170:293642..2937441680789825.8126519-CDS-P-littoralis_Contig170:293642..293744Pylaiella littoralis U1_48CDSP-littoralis_Contig170 293643..293744 -
1680789825.8209388-CDS-P-littoralis_Contig170:294156..2943931680789825.8209388-CDS-P-littoralis_Contig170:294156..294393Pylaiella littoralis U1_48CDSP-littoralis_Contig170 294157..294393 -
1680789825.8297021-CDS-P-littoralis_Contig170:295159..2953091680789825.8297021-CDS-P-littoralis_Contig170:295159..295309Pylaiella littoralis U1_48CDSP-littoralis_Contig170 295160..295309 -
1680789825.8451126-CDS-P-littoralis_Contig170:295922..2960071680789825.8451126-CDS-P-littoralis_Contig170:295922..296007Pylaiella littoralis U1_48CDSP-littoralis_Contig170 295923..296007 -
1680789825.8539064-CDS-P-littoralis_Contig170:296935..2975001680789825.8539064-CDS-P-littoralis_Contig170:296935..297500Pylaiella littoralis U1_48CDSP-littoralis_Contig170 296936..297500 -
1680789825.8635042-CDS-P-littoralis_Contig170:299412..2995811680789825.8635042-CDS-P-littoralis_Contig170:299412..299581Pylaiella littoralis U1_48CDSP-littoralis_Contig170 299413..299581 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig170.64.2

>prot_P-littoralis_Contig170.64.2 ID=prot_P-littoralis_Contig170.64.2|Name=mRNA_P-littoralis_Contig170.64.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=720bp
MEYERALFRVYDKSMEGFHSPGARSACNLLMKIFLVVSAGLFATLVLFHH
QFVNNPGCLAPLLEAAALREGVLIPPDPSPSASAGGFTGTVTANNTLGEI
DASPGGVIVPPSGATGEHEDEEDENHPTKIQLPSGNWIPYDVMIGVSIGD
GSVNPRGRHRWWGLRGAKNDGKRVDKGDGSGGRRKTAEDGEGVGGAEGGV
RGVAAGEAAEESESGEESESEGSSAGAATETEGNSSAAGAVNGTEFYADY
TFAFEPLVLLLPGKIQESHDFQWVNFTIEPSVCLREAGFMSRLLAATVVG
YDEIVANMFMVSVRSKGLLKNTQTGGEWIWSTDSKPSSSGFMRFMSAVSF
KLQVVLRSLIAFVLMSTVTAMTVRTLLSSGVVIMFPMVMLMERMGLQGVD
MHHVLALSYPWLGLPIEHLRNQNKPAGPFIMGHIMQVVVFYTVYNACLLA
WSFWLYGKTMTSSLQMWLYGMVMLYEYFALIFVRARSSIVFFSRTAALSF
VAFHVYFYHFQMGFYGLAAWCGFFGMFAVKLYVLQAIELPAYTSGEISQD
APRAHFVELPWPTWGAALPPMWSLFIPPNASTTGVYVDDVPRRPDSGPDG
GGAGDGAQLDGSPGTVAAEAVGGSGRGGGGQGEREEHGIPPARGASERGG
ARARGRGRARVGGAPRTEQERPLVGGDRHGEGGGEGQDIEMTMASRRRRD
SGGGGGGGGRRGVVGMEEG*
back to top

mRNA from alignment at P-littoralis_Contig170:289719..299615-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig170.64.2 ID=mRNA_P-littoralis_Contig170.64.2|Name=mRNA_P-littoralis_Contig170.64.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=9897bp|location=Sequence derived from alignment at P-littoralis_Contig170:289719..299615- (Pylaiella littoralis U1_48)
ACCCGCTGCTTCCTCGGTGACGGGCAGTGAGACCATGGAGTATGAGAGGG
CGCTCTTCCGCGTGTACGACAAGTCGATGGAGGGCTTCCATTCTCCCGGA
GCGAGGAGCGCATGTAATCTCTTGATGAAGATTTTTCTCGTCGTCTCTGC
CGGTCTCTTTGCTACCCTCGTTCTCTTTCACCATCAGTTCGTCAACAATC
CAGGTATGTTAGGCCTTTAGTGCTTATCAAATCATACGATATGAAAAAAC
GAAAAAAGCGAGAGAGAGCACAGCAGTAGGGGGGAGACAGAGAGACAGAG
TTGCGCTGGCGGTATCTCAATGGTTCCGTCGTGCCCAGTGTGCGACATCC
TCTCGATGATAGGGAGTGGGGATTCTTGTCTGCTGAGATGTACGGATTTT
GGTGAATGTGAACAGCATTGATCGGTACGCCAACGAACCGCTCTCATATC
CCTACCCGCTGCTGCTCGGGTTTATAAGAGCGCCGGCAGAGCGGTGTGTG
CGTTGTTGCGGCGAAACTCCTGACCGTAACCGTTGCCTCGTTTGTACAAG
CACTTGCGCTTGTACTTCTCATAAGACAGACAAAAGGCGTGATGCACCGT
GTGTAGTACGAAGCCAACGCTCTCGACCCTCATTTCCTTGAGGGTAGGGT
AGAAACCATACGTTTCTTTACTCAGGGGCAGCAATCGCGTGCTTAACTTC
GCACCATACATGTTGATTGTTCTTGATTCTCACATTAGCTCACTACCGCC
GCAGTCTAGCCCGTGGTCACAAACCAGGCACATATCGTGCTAGGAGGAAA
AAATAAAATAAAGTATACTCCGTATGGACTATGATCACCCACAGTCGAAT
CAGATATGGTACCGTTGGGGTACCATCTGTGGTGGCCAGAATACCAAACA
AATACAGAAAAAAATAACAGGCTCGAAAGAAAAACAAAAATTGGAAACAG
TCCGACAAACAAAAAATAACCAAGACAAACGTCAACCATAACCATATACT
TCGAAGTACTTCGTACATCGAACCAGGGCCCAGGGCCATGACAGACCAAG
GCAAACGCAAACCAGGGCGATGGTCCAGTAACTACATGATCAACAGACGA
AAGACAAATACATGCAATCCTGTAACTGCTACAGCATAACAGCAGCAGTG
TAATCCCGTTTCCCCTTGAGGCTGGGGTAAAAACTTTGAATAACTTTGAA
TTCGCGAGAGCACCAGTCACGTTCAATATGCAACGTACATCAATAAGATG
CTTAGTGGTCGCAAATATTTAATCCGCTGTATATCGTAGTGTCGGCGGCC
CCGGTGGTCCAGGGGGCAACCTCGAAACCTTCTGACATCTGTCATTGGTC
GTGAGGTCGAACTCCCGGCGAACTACGAGTGATTGATAGGATTATTTCAA
AATCTAGGAGTGGGAAGCGACATAGGAAAACAAACGTCGCTCGAAATTCG
ACGAGGGAGGGGGCCGGTCGAACCGATCTGGCGATAGAAGTGAAGGCAAG
CACCGCAGAAGGACGACGGCGGAGAAAAAAAAATAAAAAACAAGATCCGT
TGTTGACAACCCTCGCGTGCGACCCCGGCCGGAGGGCCCAACTTGTACCG
AGAGGTGTGGACTGGCGGCCAGAAAAGAGCGGATGACAACACACACATCG
TTTAATAGTTGACAACGCACACCGTTACGAATGGTATAACAGTAGGCCGA
TGACTTCACTCCGGGAAGTACCGGTAGGTTTTTCGAGAAATCACGATCCG
TCAAGCACAGCGAGGGGGACGACGAGATTCTAGCCGGGAGTTCCCATTGT
CGTCGCCCGATCACGTGCTTGCCGCTTCGTGCCTGTTAATTCACAGCAGT
GGTTGTTGTTCCATTCAAAACGTTTACCAGGGGGGGTGCACATCGGCAGT
ATTCCGGTAGAAGCACGAATGCAACCACTACCGCAACCGGTCTTTGGAGT
GCCCCCCACCCCCCCTACCTCCCCCCTCCTCACCCGGCTCCTCACACCCC
CCTTGGATGCGCACAACCCTTGTTCGCTTGTGTGTGTGTCTGATGTGTGT
CTGCTCTGTGTCTTGTGTGCCCGTGCGCGCGGGCTTGAAAAACTACAAAC
AAACAAACAAACCAGGCTGCCTGGCGCCGTTGCTCGAAGCGGCGGCGCTG
AGAGAAGGAGTCCTCATACCGCCCGACCCATCGCCGTCAGCTTCCGCGGG
AGGCTTCACCGGAACAGTCACCGCCAACAACACCCTGGGCGAGATAGACG
CCAGCCCGGGCGGCGTTATCGTACCCCCGAGCGGAGCGACGGGGGAGCAC
GAAGACGAAGAAGACGAGAACCATCCCACCAAGATCCAGCTCCCGTCCGG
CAACTGGATACCGTACGACGTCATGATCGGGGTTTCCATCGGCGATGGAA
GCGTGAACCCGCGCGGGCGGCATCGGTGGTGGGGGCTCCGCGGCGCCAAG
AACGACGGGAAAAGGGTAGATAAGGGAGACGGAAGCGGCGGCAGGCGAAA
GACGGCCGAAGATGGTGAGGGGGTTGGAGGAGCGGAGGGCGGGGTAAGGG
GGGTCGCCGCAGGAGAGGCAGCGGAGGAAAGCGAGAGCGGCGAGGAGAGC
GAAAGCGAAGGCAGCAGCGCAGGTGCTGCCACTGAGACAGAAGGAAATAG
TTCCGCCGCCGGGGCGGTCAACGGCACTGAGTGAGTGAGATGGGGATGGG
TGAAAAACGCGGTCGCGGAGATGGCAGGGGAGCTGTGCCGACGGCAGAGC
GGAGCTGTACTGATGTAACTTAAGGGGTGGGAGAAGAAAATCGGCACAGG
CAATTTTAGTTTTCTTGTATAGAACCAAAAGACATTAGTGGAGTATCGTG
CTTCGTGTAAGACAACGAAGGCTCGCGTAAATCAACTACAACAGCGAACG
CTACAGGGTAGCCGCGTGTGTGTGTGCTTCTGTACCGCATCAGGGCTCGG
GAGGGGGAGAGGCGGGGGCGTTGCCGAACCAAGCCAGTTGTCGATGATTT
CTACAAAAGTTGTATGTCGTGTCACGCGACATCAAATATACAGTCACTGC
TGTCACTAGACTGTCGATGCTCTTCGTTGCGCCACATCGTCGTATCGTAC
AGCTTTTCGTATTGAATGCTACCTTGCGGACGGTGGTCGATGGCACTGCT
GTTACAGTCAGTTACTACTGTACCATTTTTCGTATCAGAACAGCTCCATG
GCTTTGTGTCGTGGGCAAGGGGCCACGTGCAACGCGCGAGCGTGGATGGC
TTCCGCCCGGTCCGATCCAGCACAAAACGCTGCCTGCGTCCACAACCGCA
CACACACATGCTCATTTGCACAGACGCAAGTTTGTCAATGCTTCGCGGAG
TTTCGTCACGCATTCAAGCCCCCCCCGCCTTATCTCGTAAACGTCGTAAA
CGATGCCAACAAACACAAACACACGCTCGACGTTTTGGTCATGGTTAAGA
AGTACGACCACACCCAGCATGACTTGGCTTGATGCCTTAATTCGTACGGA
ACGTGTTTCGTGTGGCGAATTACTTCTGATGTGCGTGTGCGTGCGCTTGT
GTGTGTGTGTGTGTGTGCTCTTTTGTGTGTATGTGTGTGTTTGTCCTTTG
TTGGTCAGGTTCTACGCGGACTACACCTTCGCCTTTGAGCCGCTCGTTCT
CTTGCTGCCGGGAAAAATCCAAGAAAGTCACGACTTTCAATGGGTGAGAA
TAGCCATGGCTATTTTTACCATCAGAGCACCCTCTGCTCTCTCCTTCTTC
GCCATCCGGTTCCGACGGTTTGGTTCGGCTTTGCGCCGGGGTTAATTTAG
GTCACATACGACTGGGTTTTTGTCGGCCGCCGTCCCACGTGAACATACTA
TACTAACACTTATCAGACGTGATATGATTTTAAGTCTTCCGCTAACAACC
TGCCGCCGGCGGCCCTGATGGAGAACGATGAGAGAGGCAGTGAACCGGTG
CTGCTGCTTCCTCTTTCTTCCGATCAGGCGTATCCCGCTTCTCCCCCCTC
AAAGTGTACACTAAATTTATCCCCCGGGGGTTGCGCCTTACACCACCACG
TACTTCGGCGGCACCGTCACGTTAGACGAGTTGTGGTGCGTGTGTGGTGG
GTGAGGTGTGATAGCCACACCGGCGTTTAGTTTCGTGTGGTCACTTTTGG
CCTTTCCCCTCCTTTCTTCCCGCCCCCATCCGATGCTCCTCGTCACTTGT
TTCTGTGCATGTGCGTGTGGTCAATAATCGGTCTGTTTCGGATGAGACAA
TTTTTTTTTGTTCTGTTCTATTCTGTTTTGTTTTGTTTTGTTTTGTTTTG
TTCCAGGTTAACTTTACGATAGAGCCGAGCGTCTGTCTGCGTGAGGCGGG
CTTTATGTCGCGGCTTCTGGCAGCGACGGTGGTCGGGTACGACGAGATCG
TTGCCAACATGTTCATGGTCTCCGTGAGGTCCAAGGGGTTGCTCAAAAAT
ACCCAGGTAAGACGGAGCGGAACACATCTCCCCGACATCGTGAAGGCACG
AGCGATATCGCGGGGTCTTCGTTTGGTCTGGTTTGGTTTCAGGTTAGTTT
GGTTCTCCTTCGCATGCCCTCACGATTGGTGATGAAAATATCATTCGGTT
TTGTTTTGTGTGTGTGAGGAGGGGTTGCTCCTGCTTGCTCGTTGATGAAA
ATCGGGCACAACAGTTAATCAACATTCTGTGCCTTGATCGGCCAACCCTT
AACCCTTTGCCCCCTGCCCCTTGCCCCTTCCTTCGCGGCGTGATTCAACT
TTTTTTCTTTCGTGCGGGTGAATGTATGGCCGCCCTTTTTTGGGTCATTT
GTCCCGGGTTTTCCGTGTTTTTTTTTCTTTTTGTTATGTCATTACCACGA
CCGACCGATGGGCGCGGCTGGTTTTCTGTCGGCCGGAACGAAAAACACAA
CCGAAAACGGAACGGGAAACGCCCCTGGAACTGGCGCTGGAAACCCGGCA
CAACAACTACCACGACACCGGGCGTCGCTGGAATAAACGCGCCGCTACGC
TATGCTATGCTATGCTACGCCACGCCACGCTCAACCAATGGACCATTCCA
CGGCAACAACCTCTGCTGTGACGCCGCGGGGCCAACCGGGACCGTTGTCA
CTTAACGCGGCGCTTGGCCCTGCTGGGATTCAAATTGTGTGTACACAACT
CCGGCGTTATCCCAACACTGCTGTGCTACGCTACGCTACGCTACGGCAAT
CGACTCCCCCCCCCCCCCATAGACTGGAGGGGAGTGGATTTGGTCGACGG
ACTCGAAGCCGTCTTCCTCCGGCTTCATGCGCTTCATGTCGGCGGTTTCG
TTCAAGCTCCAGGTGGTGCTTCGGTCGTTGATCGCGTTCGTGCTCATGTC
GACGGTGACGGCGATGACCGTCAGGACCCTGCTCAGCTCGGGCGTGGTCA
TCATGTTTCCGATGGTGATGCTGATGGAGAGGATGGGACTGCAGGGCGTC
GACATGCACGTACGTTGCAGTTTCATCTCCTCTCTTTCTTTCTCTCCCTC
TCTTTTTTTTTCAGTTGGTCCAAGAAAATGGATCCGTCCGTGGTTTGCGT
GTGTTGGGTGGGCGCACGATGCGGGTGTCGGGGGATGCTGCAGCTGTGTG
GCCATCATCGTCAAAAAAAAAATTGGGTTTGCAACGTGACCGTGGCGCGT
GCGCTTGTGAATGAGTGAAACACACGAACAGAAAATTTTGCCACCATACA
TGCCATCGCTAACAGCAGGGGCCGCTATACGGCCTCACGTTTTTCGTGCT
ACCCCCCCACACATACCGCCGTATTGTCTCGTCATGTCATGTCACGTCTT
GTCTTTTTCCTCTTGCCCCACCCGTCCGAACCCCCCCCCCCCCCCCCCTG
CTCTTCTCCGATGGCCAACAGCACGTGCTGGCTCTCTCGTATCCGTGGCT
TGGACTGCCGATTGAGCACCTGAGAAATCAAAACAAACCAGCAGGGCCGT
TCATCATGGGTCACATCATGCAGGTGAATTGCGAGCGGTCGGGATACTGT
GTAACGTCGGTGTCATCAGCAGTTCGTGCGTACGGTGATGAACAGCATTG
CCTGTTGGATGCTGGGTCGAGTGGTTAGATCATACTTGTAGGCAGATTAT
AGGGCGAAGCGAATATGTCGGTAGTGGGAAGATTCAAGATTGGGAGCCCC
CCGCTTCTTCTTTTTTAGTTGCTGTCGTCGTGGGCTTTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATCTCTCTCTCTCTCCGTAC
TCGTTTTTTTCTTTCGATGGCGGTTGCTGGTCCGTGCGCATCATATAATC
AGATGTCATCAGACAGTGCTGCTTGCATCATTTTTTATGTTTCATTCTTT
GTTTACCTGATGTTTTAGCCTGGCTTCGATATTGTCGGCCCGGCCGCCGC
CACGTATACCGTAGGCCGCATAAGATTCCACGGGACCCCCTTGACCGATC
TCTCCACAGCGGGACAAGCGCAAGAACTTTGAAAGAAATGATGCGGTGGC
GTTGAAATCATGAAATAATTGAACCATCTCGTCACGAGCTTTCCGAAAAC
GTACAGCAGAAGACGTTGATTTGTTGTTGGCACGCTGTTCATCGTGAAAT
ACTACCATTGTATGTTGCGACGTCAGGGTTACAGACTTCGCGGCCCGGCC
ACCATATAATATGTGTGCAGCTATGGTATCAGGTAGCGGGGTCAACCGAC
ACAAACGTAGCAATTTTCTACACGCACGCACGTTCCAATGATGTTGTACA
AGGCCTGTGTATTACGCATCAACGGAATGTGGTAAGAATAAAGGCGTTTC
ATCTCCTTCGGCGTTCGCTTACCCTTCCTTTTGATTTTGTGTTTTTTCGG
ATATGTCCATCGTAGAAGGCTCAGTACTTTTGTGACGCGGGCTAGATTTT
GACAATATAATACTTCGAAGTGCGAAGTTTATACACACGCTATCTTTGGT
GTTGTCGCTTTACCCTGGCGCGGTTCCTTTCCGTTCCTTTCCGTTCCTTT
CCGTTCCTTTCCGTTCCTTTCCGTTCCCTTCCGCGTGTATGTGTGTGCGT
GCGTGTGCGTGCGTGCATTCGTTACCACCAGGTGGTGGTTTTCTACACGG
TTTATAACGCCTGCCTCTTGGCGTGGTCATTCTGGCTCTATGGGAAAACC
ATGACCTCCTCTCTCCAGGTGGGTTTACTTCTCTCCATCTTATACCTGGT
ATGTATTTACCAGCAGTTTATGAATGATGCGTCGAATTACGGAGTGCTTC
GAGAGCATGCTGGAACGTTGCCAAGTATCGCGTGGTGGAGTGGGTGCTGC
GCGAAAAGGACCAATCGTCGCTGCTTTCAGATAAAAGTCAACGAGTGACC
ACATCTTTGGACGTAGTTCCCGATTTACCGGTAACCAACCCCCAAGTGCA
CGTTTCTCTAAAAAAATATGTTTTTGATCCCTCCCATCGTTTCCAACACC
GAAGTCGTGGAGCCTTGATCTTCCGCTGAACTCGCTGCTGTCACTCCCAC
CGCTACCCGTTCCGCCCCCCACGCCGTCGACCCCCCCCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCCGCCCAGATGTGGCTGTACGGGAT
GGTGATGCTGTACGAATACTTCGCGCTGATCTTCGTGCGCGCGCGGTCGA
GCATCGTCTTCTTCTCGAGGACCGCGGCGCTCTCGTTCGTGGCGTTCCAC
GTGTACTTCTACCACTTCCAGATGGGCTTCTACGGGCTGGCGGCGTGGTG
CGGGTTTTTCGGAATGTTTGCCGTGAAGCTGTACGTGCTCCAGGCGATCG
AGCTGCCGGCCTACACGAGCGGAGAGATATCGCAGGACGCACCTCGGGCT
CACTTCGTAGAACTCCCCTGTGAGTCTAGTTCGATCACCGCGCGCAGTAC
TACTGTGCTGCATGTGCGTACAAGTGTTGACGGGGGGAGGCGGGGGGGAA
TTCCACCCGCCCACGTGCAGATGAACTTGTTGAACTTGTTTTTTCTGGAC
CTCTTTTTCAACGTGGTTCGTGCACTATGATATGTAGTACTGCTTGTTCG
TACTGCTGTTTCACCCTGTGGAGAGATCGGTGTGTGCGCGTACCCCCGAT
GCGCGTCCATCTTTCCGTCTGTCTGTCTGTCTGTCTGCCTGCCTGTCCGC
CTGCGTGTGCTTTGTCTCACCAGTGTGCCACTCGTGATGCGGTGTTCACT
GCACTGGCTTGGCCTTTATTTGCCATATATCCCTTTTCGTCTTTCTCTCT
TTCTCTTTCTCTTTCCCTCTCTGCCAATCTCTTTTTATTTGTCTCTCTCT
CTCCTCCTCCCCCCTTCCCCCACATGCCCGCCTCGCGCTTTCGGCTTTTC
TCCTCTGCCTCCCCTTCTTCTTCGAAAACCGCACCGCACCACACCGATCG
TCAGGGCCAACGTGGGGCGCAGCCTTACCGCCGATGTGGTCCCTCTTCAT
CCCTCCGAATGCCTCGACCACGGGGGTCTACGTAGATGACGTTCCCCGTC
GGCCGGACAGCGGACCGGACGGAGGGGGGGCAGGAGATGGGGCCCAGTTA
GATGGGAGCCCAGGAACAGTAGCAGCAGAGGCGGTGGGGGGGAGTGGGAG
GGGGGGTGGCGGGCAGGGCGAACGGGAAGAGCACGGGATCCCCCCCGCCC
GCGGTGCTTCCGAGAGAGGCGGGGCGAGAGCTAGGGGGCGAGGGCGGGCG
CGGGTCGGAGGTGCCCCGCGGACAGAGCAAGAGAGGCCGTTGGTAGGAGG
GGATCGACATGGCGAGGGTGGCGGCGAGGGGCAGGACATCGAGATGACGA
TGGCGTCAAGGAGACGGCGAGATAGCGGTGGTGGTGGTGGGGGGGGTGGT
CGTCGTGGTGTCGTGGGCATGGAAGAAGGGTGAAGGGTATCATAATACCA
GGTGTACAACAACAGTAGTAAAACAGATCACCCAAATGCAGGTGTTGATT
TGTTTCTTTTTTGTTGGGGTGTGTCTTTTGTGTGTTCCATGTGTCTCGTG
CGTGGGTGTATGTGTGTGTGTTTGTTTTTGAGGTTTGACTCTTTTTATTT
TTGTCAGAGCCGAGGCAGGTAACTCCGGCGTCCAGTTTTGGTTGATTTGC
TCGAGGGTCTGTTGTTTTTGTCTTGTTCGCGCGGTGGGCCCCTACTGCTG
TGAGAGAAGTGGCGTGATTCGTGTCCAATTCGCGGCGTAGTTTGCTGCGT
CTGTGTGCGTGTGCGTGTGCCTCCAGAGCACAATACAGAAGACCCCCGGA
ATATCACGTGTTCCGGCCGAGGCTGTGTCACTCAGCTCAAAGAGCGTGTC
TCCTACCTGGTACACCTGAAATTCAAATTTTCCGGACAACTTGGGCCTCC
GTTTTTTCCACAGCAGTGTCGTACTATAGCACTATTCTCCTGTATGGGAA
CGTCAAAGAAGGCGCAGAGGGTTTGTATTGTCGTGGGTGGCGGGCTTGGG
GGTATCATCATTCGTCATGCATGTGTACCGTTGCGAAGAGACACGGGTTG
TTGTTGTTGCGGTTCTTCCCCTTTGCTCGTTCCGTGCATCCGGCCTGCCC
GGGTTGTTGCTGCACGTGTTGCGCCTTTCTATGTATGTACTTCGTATACG
GTATGGAGAATAATATTGTCACTGGATGGGGGACGTAGTACGCGGATGAT
GTATGACACCACACCGACCGACCGAGTTTGTGGGTATTGGTTGTCGAAGC
ACGCTTGAACCACACCACTTCACACAGCAACCGAACATTTGTTACTGGGT
CCATCCATCCATCCACACTTCAACCGCTACATACAAAAATTGAATGTATG
TGTGCGTACATAATTGTATGTACTGCTGATTAGTCTACACAAAACATAGA
TAATAATGATGTTGTGCCGTCGTGTTGTACCCTACGTACTACAGCTG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig170:289719..299615-

>mRNA_P-littoralis_Contig170.64.2 ID=mRNA_P-littoralis_Contig170.64.2|Name=mRNA_P-littoralis_Contig170.64.2|organism=Pylaiella littoralis U1_48|type=CDS|length=2160bp|location=Sequence derived from alignment at P-littoralis_Contig170:289719..299615- (Pylaiella littoralis U1_48)
ATGGAGTATGAGAGGGCGCTCTTCCGCGTGTACGACAAGTCGATGGAGGG
CTTCCATTCTCCCGGAGCGAGGAGCGCATGTAATCTCTTGATGAAGATTT
TTCTCGTCGTCTCTGCCGGTCTCTTTGCTACCCTCGTTCTCTTTCACCAT
CAGTTCGTCAACAATCCAGGCTGCCTGGCGCCGTTGCTCGAAGCGGCGGC
GCTGAGAGAAGGAGTCCTCATACCGCCCGACCCATCGCCGTCAGCTTCCG
CGGGAGGCTTCACCGGAACAGTCACCGCCAACAACACCCTGGGCGAGATA
GACGCCAGCCCGGGCGGCGTTATCGTACCCCCGAGCGGAGCGACGGGGGA
GCACGAAGACGAAGAAGACGAGAACCATCCCACCAAGATCCAGCTCCCGT
CCGGCAACTGGATACCGTACGACGTCATGATCGGGGTTTCCATCGGCGAT
GGAAGCGTGAACCCGCGCGGGCGGCATCGGTGGTGGGGGCTCCGCGGCGC
CAAGAACGACGGGAAAAGGGTAGATAAGGGAGACGGAAGCGGCGGCAGGC
GAAAGACGGCCGAAGATGGTGAGGGGGTTGGAGGAGCGGAGGGCGGGGTA
AGGGGGGTCGCCGCAGGAGAGGCAGCGGAGGAAAGCGAGAGCGGCGAGGA
GAGCGAAAGCGAAGGCAGCAGCGCAGGTGCTGCCACTGAGACAGAAGGAA
ATAGTTCCGCCGCCGGGGCGGTCAACGGCACTGAGTTCTACGCGGACTAC
ACCTTCGCCTTTGAGCCGCTCGTTCTCTTGCTGCCGGGAAAAATCCAAGA
AAGTCACGACTTTCAATGGGTTAACTTTACGATAGAGCCGAGCGTCTGTC
TGCGTGAGGCGGGCTTTATGTCGCGGCTTCTGGCAGCGACGGTGGTCGGG
TACGACGAGATCGTTGCCAACATGTTCATGGTCTCCGTGAGGTCCAAGGG
GTTGCTCAAAAATACCCAGACTGGAGGGGAGTGGATTTGGTCGACGGACT
CGAAGCCGTCTTCCTCCGGCTTCATGCGCTTCATGTCGGCGGTTTCGTTC
AAGCTCCAGGTGGTGCTTCGGTCGTTGATCGCGTTCGTGCTCATGTCGAC
GGTGACGGCGATGACCGTCAGGACCCTGCTCAGCTCGGGCGTGGTCATCA
TGTTTCCGATGGTGATGCTGATGGAGAGGATGGGACTGCAGGGCGTCGAC
ATGCACCACGTGCTGGCTCTCTCGTATCCGTGGCTTGGACTGCCGATTGA
GCACCTGAGAAATCAAAACAAACCAGCAGGGCCGTTCATCATGGGTCACA
TCATGCAGGTGGTGGTTTTCTACACGGTTTATAACGCCTGCCTCTTGGCG
TGGTCATTCTGGCTCTATGGGAAAACCATGACCTCCTCTCTCCAGATGTG
GCTGTACGGGATGGTGATGCTGTACGAATACTTCGCGCTGATCTTCGTGC
GCGCGCGGTCGAGCATCGTCTTCTTCTCGAGGACCGCGGCGCTCTCGTTC
GTGGCGTTCCACGTGTACTTCTACCACTTCCAGATGGGCTTCTACGGGCT
GGCGGCGTGGTGCGGGTTTTTCGGAATGTTTGCCGTGAAGCTGTACGTGC
TCCAGGCGATCGAGCTGCCGGCCTACACGAGCGGAGAGATATCGCAGGAC
GCACCTCGGGCTCACTTCGTAGAACTCCCCTGGCCAACGTGGGGCGCAGC
CTTACCGCCGATGTGGTCCCTCTTCATCCCTCCGAATGCCTCGACCACGG
GGGTCTACGTAGATGACGTTCCCCGTCGGCCGGACAGCGGACCGGACGGA
GGGGGGGCAGGAGATGGGGCCCAGTTAGATGGGAGCCCAGGAACAGTAGC
AGCAGAGGCGGTGGGGGGGAGTGGGAGGGGGGGTGGCGGGCAGGGCGAAC
GGGAAGAGCACGGGATCCCCCCCGCCCGCGGTGCTTCCGAGAGAGGCGGG
GCGAGAGCTAGGGGGCGAGGGCGGGCGCGGGTCGGAGGTGCCCCGCGGAC
AGAGCAAGAGAGGCCGTTGGTAGGAGGGGATCGACATGGCGAGGGTGGCG
GCGAGGGGCAGGACATCGAGATGACGATGGCGTCAAGGAGACGGCGAGAT
AGCGGTGGTGGTGGTGGGGGGGGTGGTCGTCGTGGTGTCGTGGGCATGGA
AGAAGGGTGA
back to top