mRNA_P-littoralis_Contig170.45.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig170.45.1
Unique NamemRNA_P-littoralis_Contig170.45.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig170.45.1 vs. uniprot
Match: D8LRA0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRA0_ECTSI)

HSP 1 Score: 99.4 bits (246), Expect = 4.580e-22
Identity = 57/104 (54.81%), Postives = 73/104 (70.19%), Query Frame = 2 
Query:    5 KLVMLALWAAWMVYRISSWGRLLRKLPYVPTRFHQLSYRFFGVQAVFVGVVYAVLALARLAKIHHYYDLLGGSSVTASELMLLFAVKGREDHVRMVWMLCAFVL 316
            ++V++A+W      RI+S GRLLR+LPYVPTRF QLSY FFG+Q +F+ +V+AVLALARLA+I      LGG+SV A    LLF V  R+DH   VW+  AF L
Sbjct:  814 EMVLMAMWXXXXXXRITSAGRLLRQLPYVPTRFQQLSYTFFGLQVLFLVLVFAVLALARLARILDTD--LGGNSVGAE--FLLFVVNTRQDHTASVWIALAFAL 913
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BLAST of mRNA_P-littoralis_Contig170.45.1 vs. uniprot
Match: D7G0U2_ECTSI (Lipase_3 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0U2_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 7.430e-21
Identity = 50/104 (48.08%), Postives = 73/104 (70.19%), Query Frame = 2 
Query:    5 KLVMLALWAAWMVYRISSWGRLLRKLPYVPTRFHQLSYRFFGVQAVFVGVVYAVLALARLAKIHHYYDLLGGSSVTASELMLLFAVKGREDHVRMVWMLCAFVL 316
            +++M+ +W  W+++ + + GRLLRKLPYVP RF QLSYRFFG+QA+ +GVVY + AL RL    +  D +GG ++ A    LL +VK R+DH+  V +LCA+ L
Sbjct:  571 RILMVRVWVVWILFCMYTSGRLLRKLPYVPNRFRQLSYRFFGLQAILLGVVYVMFALWRLVDTLN--DDVGGKTLAAQ---LLLSVKARQDHLATVSILCAYTL 669
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BLAST of mRNA_P-littoralis_Contig170.45.1 vs. uniprot
Match: D8LEN2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEN2_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 2.250e-19
Identity = 54/104 (51.92%), Postives = 70/104 (67.31%), Query Frame = 2 
Query:    5 KLVMLALWAAWMVYRISSWGRLLRKLPYVPTRFHQLSYRFFGVQAVFVGVVYAVLALARLAKIHHYYDLLGGSSVTASELMLLFAVKGREDHVRMVWMLCAFVL 316
            ++ M+ LWA WM+ RI   G LLRKLPYVP R+ QLSYRFF +QA  +G+VY   AL RL  I +  D LGG++V A+E ML   +K R+DH+  V  LCA+ L
Sbjct:  687 RIFMVMLWAVWMLCRIYISGCLLRKLPYVPNRYQQLSYRFFALQAFLLGIVYVTFALWRLIDILN--DDLGGNTV-AAEFMLF--IKTRQDHLGSVSTLCAYAL 785
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BLAST of mRNA_P-littoralis_Contig170.45.1 vs. uniprot
Match: A0A6H5KRH3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRH3_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 5.750e-19
Identity = 53/104 (50.96%), Postives = 70/104 (67.31%), Query Frame = 2 
Query:    5 KLVMLALWAAWMVYRISSWGRLLRKLPYVPTRFHQLSYRFFGVQAVFVGVVYAVLALARLAKIHHYYDLLGGSSVTASELMLLFAVKGREDHVRMVWMLCAFVL 316
            ++ M+ LWA WM+ RI   G LLRKLPYVP R+ QLSYRFF +QA  +G+VY   AL RL  I +  D LGG++V A+E ML   +K R+DH+  +  LCA+ L
Sbjct:  853 RIFMVMLWAVWMLCRIYISGCLLRKLPYVPNRYQQLSYRFFALQAFLLGIVYVTFALWRLIDILN--DDLGGNTV-AAEFMLF--IKTRQDHLGSMSTLCAYAL 951
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BLAST of mRNA_P-littoralis_Contig170.45.1 vs. uniprot
Match: D8LEN4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEN4_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 9.570e-18
Identity = 50/104 (48.08%), Postives = 70/104 (67.31%), Query Frame = 2 
Query:    5 KLVMLALWAAWMVYRISSWGRLLRKLPYVPTRFHQLSYRFFGVQAVFVGVVYAVLALARLAKIHHYYDLLGGSSVTASELMLLFAVKGREDHVRMVWMLCAFVL 316
            ++ M+ LWA WM+ R+   G LLRKLPYVP R+ QLSYRFFG+QA+ +G+VY    L RL  I    D + G++  A++LML   V+ R+DH+  V +LCA+ L
Sbjct:  377 RIFMVMLWAVWMLCRMYVSGCLLRKLPYVPNRYQQLSYRFFGLQAILLGIVYTTFTLWRLIDILD--DDMDGNTF-AAQLMLF--VRTRQDHLGSVSILCAYAL 475
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BLAST of mRNA_P-littoralis_Contig170.45.1 vs. uniprot
Match: A0A6H5JIC3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIC3_9PHAE)

HSP 1 Score: 50.8 bits (120), Expect = 4.800e-5
Identity = 24/30 (80.00%), Postives = 27/30 (90.00%), Query Frame = 2 
Query:   47 RISSWGRLLRKLPYVPTRFHQLSYRFFGVQ 136
            RI+S GRLLR+LPYVPTRF QLSY FFG+Q
Sbjct: 1073 RITSAGRLLRQLPYVPTRFQQLSYTFFGLQ 1102
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig170.45.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LRA0_ECTSI4.580e-2254.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G0U2_ECTSI7.430e-2148.08Lipase_3 domain-containing protein n=1 Tax=Ectocar... [more]
D8LEN2_ECTSI2.250e-1951.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KRH3_9PHAE5.750e-1950.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LEN4_ECTSI9.570e-1848.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JIC3_9PHAE4.800e-580.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig170contigP-littoralis_Contig170:203183..205309 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LEN2
PFAMsLipase_3,MIG-14_Wnt-bd
Model size318
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal anchor
Exons3
Evalue8.04e-20
EggNOG OGsKOG4569@1|root,KOG4569@2759|Eukaryota
Descriptionphospholipase A1 activity
Cds size303
COG categoryG
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789825.0667908-CDS-P-littoralis_Contig170:203182..2032241680789825.0667908-CDS-P-littoralis_Contig170:203182..203224Pylaiella littoralis U1_48CDSP-littoralis_Contig170 203183..203224 -
1680789825.0784616-CDS-P-littoralis_Contig170:203917..2040551680789825.0784616-CDS-P-littoralis_Contig170:203917..204055Pylaiella littoralis U1_48CDSP-littoralis_Contig170 203918..204055 -
1680789825.0876174-CDS-P-littoralis_Contig170:205173..2052961680789825.0876174-CDS-P-littoralis_Contig170:205173..205296Pylaiella littoralis U1_48CDSP-littoralis_Contig170 205174..205296 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789825.0964518-UTR-P-littoralis_Contig170:205296..2053091680789825.0964518-UTR-P-littoralis_Contig170:205296..205309Pylaiella littoralis U1_48UTRP-littoralis_Contig170 205297..205309 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig170.45.1prot_P-littoralis_Contig170.45.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig170 203183..205296 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig170.45.1

>prot_P-littoralis_Contig170.45.1 ID=prot_P-littoralis_Contig170.45.1|Name=mRNA_P-littoralis_Contig170.45.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=101bp
MLALWAAWMVYRISSWGRLLRKLPYVPTRFHQLSYRFFGVQAVFVGVVYA
VLALARLAKIHHYYDLLGGSSVTASELMLLFAVKGREDHVRMVWMLCAFV
L
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mRNA from alignment at P-littoralis_Contig170:203183..205309-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig170.45.1 ID=mRNA_P-littoralis_Contig170.45.1|Name=mRNA_P-littoralis_Contig170.45.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2127bp|location=Sequence derived from alignment at P-littoralis_Contig170:203183..205309- (Pylaiella littoralis U1_48)
CGGGAAGCTCGTCATGCTGGCGCTGTGGGCTGCGTGGATGGTGTACAGGA
TCTCCAGCTGGGGTCGCTTGCTGAGGAAACTTCCGTACGTGCCGACGCGG
TTCCATCAATTGTCCTACAGGTTCTTCGGCGTTCAGGTGAAAATAAGCCA
AGTTATGATACTGTATTTGTATTTATTTGTTTTTTTTCACCTGTGTTGAG
GTCGTCGTAGATCGCCCCCCTTTTTCCCCTGTGTTGAGGTCGTCGTAGAT
CGTTTTCCACGGACAGACAAGACACGTATACGTGCACTACTATACTGCTG
GTGGTGGTGGTGGTGGTGGTGTCACTTGTCGATATTGCGGCCATCCGACA
CCTTCACATACAGCGTGTTGGCCCAAATTTGACTCACAAAGAAATACAGT
AAGTTGGGGTTATAGAAACCTGAGTCTCAGTTTTTTTCTAGAACAAGTTA
GAAATTTAACTATTATTGCAAGGGTTTATTTGCTGGGCTCGCAGCGGCCC
CCGCGATACTCTAAGTTTACTAAAAGTATATGGTTGGGACAAGAAAAGGT
TTTGAGCCTTGCCTCAAATTTAGCGGGCTCTCCAACTGTTGTACTATACC
TCATGTGGTCTACATGTGTAAAGGTACGCCGGCGGCGGTGGTTTGCTGCG
GCAGGCGTCACGCGTGTATTTTTGGGGGGATCAACATGTCCGCTGCAACA
ACAGCAGCTTCCTCCAAAAATACGTCGAAGAAGCCTGTTATTTCATGTTC
CCGATGAAAGCTGAGTTGAAACATTGTTTGTTTGGAAACAATAAACAATT
AATGTTTCATTACTTAAATTTCAATACTAAAATTTCAATACTTCAATACT
TGAATAGTTCAGTATTGCAATATGGTATTCGTTCGTTCACACAAACTTAG
GACACGAAAATAGCGGAGGCAACAATTCAATAGTTTGACATGTTTCGATA
TGTTTCAACATGTATTATATGTGTATGTTTAAAAATGTTTCTCAACATAA
TTCCATCAATAATATCGCGATATTTCATTACTCCAATATTTGAATATACG
GAGTAGTTAAATTTTTCTTCATACTTCGTACCATGTATACCATTTTTCAA
CATTATTTCAACATTATTTCAACAAATCGTTTCCCACCGACTGCTTGATA
TAATTGCCATCCACGCCCTGTGCTGTGGGGGAGTTGTTTCTGTCTCCCGG
TTTGGTGGGCGTGTGTGTGATGTTCGTTCACATTATCATTAACCAATCGC
ACAGGCAGTATTCGTGGGGGTGGTGTACGCCGTGCTGGCCCTGGCGAGGC
TGGCCAAGATCCATCATTACTACGACTTGTTGGGGGGAAGTTCGGTCACC
GCCTCCGAGTTGATGCTGCTCTTCGCTGTGAAGGGTAGAGAGGTCAGTTG
ATGGGGGGGGTGAGCAGCACGCACGCGCGGCGGAATCTCCTATTTTTCCT
TTCAAGGGTTCTCGTTTATCTTTCATGTTCGTTGTATGTATGTATCTACC
CCAACAAATCACCTTCCTGTTATGAATAGTTCAAAAATTAGGGCGAAGAA
AGTAGAAACGGCTAATTCTCCCCCAAAAACAAATGGCGCACATACAAAAA
AAAACACAGTTAGTCTTCTCTTTAGGCTGTATTAACACATGGAACACATA
CTGTATGTAGAACTTCGTGCGGTTGTTTCACCCCCGTACATCTAAATACC
ACGTACAGCACTGCGACGTACATGTTTGGTGCGCGGCACACAACTTGTGT
GTACCTCGCGCAGTGACAACCAAAAAAAATAAAAACTCCCTTCGCGGATA
ATCTCTTCGTTAAGTTCTTGCTTCTTAAGTTTAGGGGGTATATATAGTAC
CTTGCTCGTCTTGGAGACACACACATTTTTTCACCGGGCGCCGCCCCCAT
CCCTCGCCTCCCTCTGCATTCATTCACTCATTCGTCATTTTTTTCGTGAC
GTAAACGCCCTGCTGCTGCTGCTGCTGCGGCTCTGCTGCTGCTTCTATTT
GTGCGCCGACACCGTCATCACCGCCGGGCGATACGTGTTCTTATATACCG
GTATACTCGTGTGGGTGGTGCGTGGGTGTTTTCAGGACCATGTGAGAATG
GTTTGGATGTTGTGCGCCTTCGTGCTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig170:203183..205309-

>mRNA_P-littoralis_Contig170.45.1 ID=mRNA_P-littoralis_Contig170.45.1|Name=mRNA_P-littoralis_Contig170.45.1|organism=Pylaiella littoralis U1_48|type=CDS|length=303bp|location=Sequence derived from alignment at P-littoralis_Contig170:203183..205309- (Pylaiella littoralis U1_48)
ATGCTGGCGCTGTGGGCTGCGTGGATGGTGTACAGGATCTCCAGCTGGGG
TCGCTTGCTGAGGAAACTTCCGTACGTGCCGACGCGGTTCCATCAATTGT
CCTACAGGTTCTTCGGCGTTCAGGCAGTATTCGTGGGGGTGGTGTACGCC
GTGCTGGCCCTGGCGAGGCTGGCCAAGATCCATCATTACTACGACTTGTT
GGGGGGAAGTTCGGTCACCGCCTCCGAGTTGATGCTGCTCTTCGCTGTGA
AGGGTAGAGAGGACCATGTGAGAATGGTTTGGATGTTGTGCGCCTTCGTG
CTG
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