mRNA_P-littoralis_Contig17.228.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig17.228.1
Unique NamemRNA_P-littoralis_Contig17.228.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig17.228.1 vs. uniprot
Match: A0A6H5JFA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFA4_9PHAE)

HSP 1 Score: 149 bits (375), Expect = 6.860e-36
Identity = 82/122 (67.21%), Postives = 91/122 (74.59%), Query Frame = 3 
Query:  612 SALRRPILDGFMWAVVGSRSKSSS--SLCGKSGNTSVDVVEQSGFGLSLIDRIVDYHPYRILGSALFSCPRRHHLPGSNTATRRSGVLLRAVGETLVADSLFFLRFPCLPRLWKMVCRLGYF 971
            SALR PILDGFMW VVGSRSKSSS   LCG +G T VD +EQSGFGLSLIDRIVD+HPY +LG ALFS P  HHLPGS+ ATRRS V++RAVGETLV DSLF L        W+    +G F
Sbjct:  280 SALRWPILDGFMWVVVGSRSKSSSLMRLCGMAGYTPVDRLEQSGFGLSLIDRIVDHHPYSLLGRALFSYPHGHHLPGSDEATRRSWVMVRAVGETLVVDSLF-LALSLSSETWEDGVSIGIF 400
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig17.228.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JFA4_9PHAE6.860e-3667.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig17contigP-littoralis_Contig17:973236..975522 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1580
Hectar predicted targeting categoryother localisation
Exons3
Cds size333
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789823.0392056-UTR-P-littoralis_Contig17:973235..9738381680789823.0392056-UTR-P-littoralis_Contig17:973235..973838Pylaiella littoralis U1_48UTRP-littoralis_Contig17 973236..973838 -
1680789823.0615568-UTR-P-littoralis_Contig17:974171..9746701680789823.0615568-UTR-P-littoralis_Contig17:974171..974670Pylaiella littoralis U1_48UTRP-littoralis_Contig17 974172..974670 -
1680789823.0749614-UTR-P-littoralis_Contig17:975136..9752111680789823.0749614-UTR-P-littoralis_Contig17:975136..975211Pylaiella littoralis U1_48UTRP-littoralis_Contig17 975137..975211 -
1680789823.0913324-UTR-P-littoralis_Contig17:975452..9755221680789823.0913324-UTR-P-littoralis_Contig17:975452..975522Pylaiella littoralis U1_48UTRP-littoralis_Contig17 975453..975522 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789823.05295-CDS-P-littoralis_Contig17:973838..9741711680789823.05295-CDS-P-littoralis_Contig17:973838..974171Pylaiella littoralis U1_48CDSP-littoralis_Contig17 973839..974171 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig17.228.1prot_P-littoralis_Contig17.228.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig17 973839..974171 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig17.228.1

>prot_P-littoralis_Contig17.228.1 ID=prot_P-littoralis_Contig17.228.1|Name=mRNA_P-littoralis_Contig17.228.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=111bp
MWAVVGSRSKSSSSLCGKSGNTSVDVVEQSGFGLSLIDRIVDYHPYRILG
SALFSCPRRHHLPGSNTATRRSGVLLRAVGETLVADSLFFLRFPCLPRLW
KMVCRLGYFR*
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mRNA from alignment at P-littoralis_Contig17:973236..975522-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig17.228.1 ID=mRNA_P-littoralis_Contig17.228.1|Name=mRNA_P-littoralis_Contig17.228.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2287bp|location=Sequence derived from alignment at P-littoralis_Contig17:973236..975522- (Pylaiella littoralis U1_48)
GGCTAGGTCGCCACCTTCGAGAAACGCCTCCCGAAGTCTCACGGGGGGCT
GGGGGGCTTGGTGGATGCCGGTGAGTTTGGTGCTTTTTCTTGGGCGCCAC
CTGTCGTACGAGATCCACGTTGGCTTCTTCGCGGTCTGGCCCGTTTAGCC
CAACACACCCCGAACCGAACGTGAAACTGCCATTATACGCAGCCTGCATG
GTGAAGGCCAGCCAGACGCCTTTGGCACCCAAAATGAGCCACAGCTCCGT
GCAATCGCCACCACACAACTCGTATTCGCTTTCCTCCGCTTTTCAACGTC
GACCATTTTAGGAGGAGGGTATATTCTCGCTCAGGAGCAAAAGACCGAGT
CCCAAGAGGAATTCAATGAGAGGATGGAGTATCCAGGTGCGCTCTTGATC
CAGACTAGCATTGGTGGGCTCACCTGGTCGTACTTGGTGGTCTCTACAAA
GATTGTCGTTCTTTTCGATACGGACGCCGTGTTCAGCAGTTGCCTCGATT
AGGGCTGGCCTCAAATGCTCGCACTTGATGACGTTTTTCCCGTAGAGGGT
GAGGATTCGGTTTGAATCGGTGCCCAATAAAGTATTGAAGCCCAATGAAG
TATTGAAAAGGGTTGCTCTCACGAGACCCCCCGGTTGTTCGCGACTAGCC
CTTCGTTGCAACGCTGCTTCATGCCTCTCCTCGTCGCGATGCGAGCTTGA
GTTACTTCGGTGGCAAATTAACGCTCCTCCTTCTCTTCTTACTCTTGTTC
TCTTTTGTGTCAGGTCGTTGGCTCACATAGTAGGACATTGTATTTTCCGT
GTCGCTTACATGGCCTTTTATTCCGTAACCGTTTCTCGCCGTGAATTTGC
AGCTCGCGCTGCAGATTGGCAAACCGTCACCCCCGGCGGGCTTCGGGTCA
CCCAGGCTCACGTAGAAGAAGTCGGCAGAGAGACGGGCCATCTGGGGGCA
CGAATTGCTGCACTTGAAGAAAACCGAGGCGAGTTGAAGGAGCTTAGCCC
CGCAGTTGCATTTTTGGGACTGCTAACTCCACCAGTGCTGTCTCTATGAT
AAGGCTGGTACGCAACTGACACGTTATACAGGTGCTCAAGTTGTTTCCAG
CAGTGTTGACTCTTTCGGTATAACACGTGCCGTTCGTAGGGAAGAAAAAG
GGGCTTCGACTTCGCTGGCGCGGCAATCGCTGATTCAGCACGGTAGCAGC
GGAATCTGAACTGATCGAAGAGCGGTGACGACGGAGTCTCTTGTGAGGCA
CTCCACACACCTTTACGAGGTGAAAACAGCGGGAGGCATCACGACACATC
CGGTCGTCTGGCCTGCCGTCCGCCCTGAGACGGCCAATCTTGGATGGTTT
TATGTGGGCTGTGGTGGGATCACGCTCGAAGTCGAGTTCGTCTCTGTGTG
GAAAATCAGGGAACACGTCGGTGGACGTAGTGGAGCAATCTGGGTTTGGT
CTGTCGTTGATCGACAGAATCGTAGACTATCACCCCTATCGTATCCTCGG
CAGCGCTCTGTTTTCCTGCCCCCGTCGGCACCACCTTCCTGGTTCCAACA
CGGCCACGCGTAGATCAGGGGTTCTGCTGCGGGCGGTGGGGGAGACGTTG
GTGGCTGACTCGCTGTTTTTTTTGCGCTTTCCCTGTCTACCGAGACTTTG
GAAGATGGTATGTCGATTGGGGTATTTTCGCTAATTTTCTCGGTGCTGGA
GTTGCTCGCGGAACTCCAGTACTACACGGCAGAGGCCAGGGCGAACATGG
TGGCGGATGGGGAGGAAGCAATGGAGGCAGAAGGGGCCGACCGCGATTCG
TAAGAGATGGTAAACCACGCACCATCCGCCTAAGGGTAGACTTGGGCTTT
TTTATGCCCGAGGGTAGGCAATGGCCCCGAATAGACAGAATTTTAACATT
TTGCCATGATATCGTGCGAACACACAACTGCCATCACAGTGAGTTTTGGG
TTTGATAGGACTGCAAAGCAGGCACGACGTGGAAAGTGTTGGCTAAAGAA
CATGCTTGCATCGCATCGGTCGGCCTAGATTGATTTTCCCGGTCGTTCGA
TATATCTTGAAAGTTGAGACTTTTCCGCCACGTGACGTGAGATACCATAC
CCCCCCAGGTTTTGATCTTGGCGTTGAATTTTCAATAAGGGCGATGGTGG
TGACTTTCATGACGGCACCATTCCAAAGATCTAGAAAAGAGCTCCCTAAA
TATATCATGTCTCACTCACCATCGGTGTCGCGGAGAAATCCCAGTTTGTA
TATTTCGTTCAATATTCGAAATAGCAAGTGTCCCGTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig17:973236..975522-

>mRNA_P-littoralis_Contig17.228.1 ID=mRNA_P-littoralis_Contig17.228.1|Name=mRNA_P-littoralis_Contig17.228.1|organism=Pylaiella littoralis U1_48|type=CDS|length=333bp|location=Sequence derived from alignment at P-littoralis_Contig17:973236..975522- (Pylaiella littoralis U1_48)
ATGTGGGCTGTGGTGGGATCACGCTCGAAGTCGAGTTCGTCTCTGTGTGG
AAAATCAGGGAACACGTCGGTGGACGTAGTGGAGCAATCTGGGTTTGGTC
TGTCGTTGATCGACAGAATCGTAGACTATCACCCCTATCGTATCCTCGGC
AGCGCTCTGTTTTCCTGCCCCCGTCGGCACCACCTTCCTGGTTCCAACAC
GGCCACGCGTAGATCAGGGGTTCTGCTGCGGGCGGTGGGGGAGACGTTGG
TGGCTGACTCGCTGTTTTTTTTGCGCTTTCCCTGTCTACCGAGACTTTGG
AAGATGGTATGTCGATTGGGGTATTTTCGCTAA
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