mRNA_P-littoralis_Contig17.69.34 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig17.69.34 vs. uniprot
Match: D7FK56_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK56_ECTSI) HSP 1 Score: 843 bits (2177), Expect = 3.540e-278 Identity = 687/1396 (49.21%), Postives = 793/1396 (56.81%), Query Frame = 2
Query: 422 AGISRVDICYETGAVRDLNAMNENIRSLLEVDFPAYGITRPSSLVSLSLHSNRVSSLEGFSSLTALTALNLSSNELDGAAIRSCAPHLGGLSSLESLDLSCNRIDALLGLPYLPRLRRLLVPYNRLGALDGVQALASSLTYLDARENRIAGPTGTHAPQLAALGRLKNLVLASRGGRGRGGGWHSNPVCACRDYRRDIFAAARSLETLDGDAADGGGRESTTAAAGXXXXXXXXXXXXXXXVRARPSSGVGGAADWARNKRSAASRGPAHYVQQAEKTTAEAAA--AAVAPEE--LLPRFEALADRFRRRHSRGNEERGP------------------TLRVISDNSGRDAAGGGRGHAREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKREGREGCGDGSGVFDRSGXXXXXXXXXXXXXXXXXXXXTVTRRRGKRSGTTG-----DAKSPVKSVDGDAAAEENGLLSRLRSVAQEARLEVMDSRLQDLHVN---------ADAARRAXXXXXXXXXSRRGNLNPSRTPGGFKPGSHSRSNPWVQQRAAQPRAAEGK-TVPRRRSILGTGSTTRVRGGSTAAVGDHPVRRTNAFEGVTTGVPSGDTR---NGDYSIGAGLVPTVTAAAGPRPAVYFEEAPAPAASCPCCSRVQDASELMTLAAAEGEAETAATARGKRVLLLGESVRVGVSTLEVVAPKHVSHTSMQATRGPGATGNFRSTRRRLSARKKAAAGXXXXXXXXXXXXXXXXAVISVGRAVAAAAVVGATAAAMSGFDNRRLAVRFLRWARNSDRAKAXXXXXXXXXXLTATGEEAQRERQAWESLQATLEGSAAAREREAREAAEEAGRTELRSAAAARRSAEDAAAALTLQLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEECRRVRALLREAESRCRGLQDQVEESRARERRSSADAEDARRRAAVDADKKLAAAVDSERERMSALTRKLEAAQDAXXXXXXXXXXXXXXXXXXRRVATELAELARQQKAALQHARGEIGAARGERIAAQEAAELTKAEAARKDAEIKELGAALEAREAELGAERQARRRHQKEFQAAEARAEALTEEKXXXXXXXXXXXVAQGDLRAALMVKDKVLEDREKLAKELRLREGDALAEAQGWRDRLEAQQAEADHQLDAAREEVSELQAQVVALSGVEDQLREVFEELRRYRKRHEAEQDXXXXXXXQHREQGGVSSSSRGPRRGQGGPEGDYCATELTAVAAVTAAARAVEEELREQLEAKDEALRYVENELLGMKSLFEKKEACLRQALSEERDKLTREATLLRQRLELAEAGRTAAEEATREQAMAADTLRSDLQSGERRSKELE 4489
A +SRVD+ +E A R LNAMNENI SL EVDF AYGI RPS+LVSLSLHSNR+SSLEGF+S+TALTALNLSSNELDG AIRSCAPHLG L+SLESLDLSCNRID LLGLP+LP LRRLLVPYNRL +LDGVQALASSLT+LDAR+NRIAGP G HAP LAALGRL++L LAS G RG NP+CACR YR D+FAAARSL+TLDG+ A + TAA XXXXXXXXXX D + A+ P A +T AA A VAPEE + PRF+ALA RFR R + RV ++G +++ G + EG GDG G G+R G D +S V+ G+ AEE+GLLSRLRSVAQEARLEVMDSRLQDLH A AAR + RG + + G + GS RSNPW Q Q R GK VPR ++ GTGST +R AV D PVR T A SGD NG + G+ A A P E + A C CC QDASEL T ARG GE VG LE +H++ S QA RGPG + + RR+S A + +S+G AVAAAA+VGATAAA+SG D RLA F RWAR++DRA+AXXXXXXX L EA+RER+AWES+QA LEGSAAAREREARE+A+E GR E+RS AAA RSAE+ A++L L+L EECRRVR+LLRE R+S DA+DARRRAA+DADKKL +AVDSER+R+ L KLEAA+DA XXXXXXXXXXX RR A ELA+LAR+QKAALQ A GEI AAR ERI AQEA L AERQARR+ Q+E +AA ARA+AL +EK +AQGDLRAA+MVKDKVLEDREKL KELRLREGDALAEAQ WRDRL+AQQAE+D +LDAAREEVSEL+AQVVALSGVEDQLREVF+ELRRYRKRHE+E D XX QGG SS RR + C+TELTAVAAVTAAA+AVEEELR QLEAKD+ALRYVENELLGMKSLFE KEACLRQ L EERDKL E +LRQRLE AE R AAEE+ R+ A + LRS L++G+RRSKE++
Sbjct: 24 AEVSRVDV-HEMSAARVLNAMNENIGSLGEVDFLAYGIARPSTLVSLSLHSNRLSSLEGFASMTALTALNLSSNELDGEAIRSCAPHLGPLASLESLDLSCNRIDGLLGLPFLPGLRRLLVPYNRLTSLDGVQALASSLTHLDARDNRIAGPAGAHAPHLAALGRLESLALASVG---RGRRVQPNPICACRGYREDVFAAARSLKTLDGENASFFFEDRETAATPAEAAAXXXXXXXXXXXXXXXXXXXDVTED------TPAASEPGGDRNAAAETAIPVAAVTALVAPEEVPIAPRFDALAGRFRHRXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRRVAVQSAGVESSSSDAGWS-------------------------------------------------EGDGDGLRESHAEGFDADSFGVVGSAGRVDTEETAARAVPGRRKDGGGGRGIFDGESGVREALGEDVAEEHGLLSRLRSVAQEARLEVMDSRLQDLHDKQAQDTARHAATAARATAALRRSVSNTTRGQAHEAGAAGPTRRGS--RSNPWAQHGDPQQRGVAGKGVVPR--TVRGTGSTVPLRSNGNTAVADRPVRWTRA---------SGDCAAIGNGGFGSRGGVTQPPAAVARPEDVCGGEASVT--ARCSCCGG-QDASEL-----------TLQAARGGGCTPPGEPGGVGAKPLESSGRRHLADASTQANRGPGPLSSGPARTRRVSVTPSAGSFALWNAGTGKSGSSPSTGGLSIGGAVAAAALVGATAAALSGHDGHRLASSFSRWARDTDRARAXXXXXXXDEALAGARREAERERKAWESVQAALEGSAAAREREARESAQEEGREEMRSMAAACRSAEETASSLELRLAQAETDAAAAVLGQQQAQADVIRAKTDAEASVKASEARATAEMERLEGQLRGKARAESEAEEECRRVRSLLREXXXXXXXXXXXXXXXXXXXXRASTDADDARRRAALDADKKLVSAVDSERDRIVVLKHKLEAAEDAARAAXXXXXXXXXXXARGRRAAAELADLAREQKAALQVANGEIRAARTERIGAQEAMXXXXXXXXXXXXXXXXXXXXXXXXXXTLAAERQARRQCQQELEAAVARAKALDQEKEDAEAKMMASAIAQGDLRAAVMVKDKVLEDREKLVKELRLREGDALAEAQAWRDRLDAQQAESDQRLDAAREEVSELEAQVVALSGVEDQLREVFKELRRYRKRHESEDDGKGDGXXXDDRQGGESSRDGSGRRQRS------CSTELTAVAAVTAAAKAVEEELRAQLEAKDQALRYVENELLGMKSLFESKEACLRQELGEERDKLAGEVGVLRQRLEQAEESRAAAEESARQHASTSGALRSSLRNGDRRSKEVQ 1327
BLAST of mRNA_P-littoralis_Contig17.69.34 vs. uniprot
Match: A0A6H5LCW9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCW9_9PHAE) HSP 1 Score: 327 bits (838), Expect = 8.230e-98 Identity = 217/322 (67.39%), Postives = 245/322 (76.09%), Query Frame = 2
Query: 3749 VAQGDLRAALMVKDKVLEDREKLAKELRLREGDALAEAQGWRDRLEAQQAEADHQLDAAREEVSELQAQ------------VVALSGVEDQLREVFEELRRYRKRHEAEQDXXXXXXXQHREQGGVSSSSRGPRRGQGGPEGDYCATELTAVAAVTAAARAVEEELREQLEAKDEALR-------YVENELLGMKSLFEKKEACLRQALSEERDKLTREATLLRQRLELAEAGRTAAEEATREQAMAADTLRSDLQSGERRSKELEDTLRALLLKHTSQMAAAEATSQKLSKMAALFQQLQDQDGGSRTAVAFDRIAPSHGE 4657
+AQGDLRAA+MVKDKVLEDREKL KELRLREGDALAEAQ WRDRL+AQQAE+D +LDAAREEVSEL+AQ VVALSGVEDQLREV +ELRRYRKRHE+E XXXXXXX QG ELTAV AVTAAA+AVEEELR QLEAKD+ALR YVENELLGMKS+FE+KEACLRQ LSEERDKL E +LRQRLE AEAGR AAEE+ R+ A +D LRS L++G+RRSKELE+TLRALLLKHTS MAAAEATS+KLSKMAA+FQQLQ G R + +++AP+HG+
Sbjct: 6 IAQGDLRAAVMVKDKVLEDREKLIKELRLREGDALAEAQAWRDRLDAQQAESDQRLDAAREEVSELEAQASRSIFVDRGLSVVALSGVEDQLREVCKELRRYRKRHESEXXXXXXXXXXXXRQG-----------------------ELTAVGAVTAAAKAVEEELRAQLEAKDQALRRVAPLLSYVENELLGMKSMFERKEACLRQELSEERDKLAGEVGVLRQRLEQAEAGRAAAEESARQHASTSDALRSSLRNGDRRSKELEETLRALLLKHTSHMAAAEATSKKLSKMAAIFQQLQGDQDGRREVASMEQVAPAHGQ 304
BLAST of mRNA_P-littoralis_Contig17.69.34 vs. uniprot
Match: A0A6H5KTU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTU3_9PHAE) HSP 1 Score: 337 bits (865), Expect = 4.380e-96 Identity = 341/807 (42.26%), Postives = 393/807 (48.70%), Query Frame = 2
Query: 614 ALTALNLSSNELDGAAIRSCAPHLGGLSSLESLDLSCNRIDALLGLPYLPRLRRLLVPYNRLGALDGVQALASSLTYLDARENRIAGPTGTHAPQLAALGRLKNLVLASRGGRGRGGGWHSNPVCACRDYRRDIFAAARSLETLDGDAADGGGRESTTAA-----AGXXXXXXXXXXXXXXXVRARPSSGVGGAADWARNKRSAASRGPAHYVQQAEKTTAEAAAAAVAPEELLPRFEALADRFRRRHSRGNEERGPTLRVISDNSGRDAA---GGGRGHAREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKREGREGCGDGSGVFDRSGXXXXXXXXXXXXXXXXXXXXTVTRRRGKRSGTTG-----DAKSPVKSVDGDAAAEENGLLSRLRSVAQEARLEVMDSRLQDLHVNA--DAARRAXXXXXXXXXSRRGNLNPSR----TPGGFKPGSH-SRSNPWVQQRAAQPRAAEGK-TVPRRRSILGTGSTTRVRGGSTAAVGDHPVRRTNA---FEGVTTGVPSGDTRNGDYSIGAGLVPTVTAAAGPRPAVYFEEAPAPAASCPCCSRVQDASELMTLAAAEGEAETAATARGKRVLLLGESVRVGVSTLEVVAPKHVSHTSMQATRGPGATGNFRSTRRRLSARKKAAAGXXXXXXXXXXXXXXXXAVISVGRAVAAAAVVGATAAAMSGFDNRRLAVRFLRWARNSDRAKAXXXXXXXXXXLTATGEEAQRERQAWESLQATLEGSAAAREREAREAAEEAGRTELRSAAAARRSAEDAAAALTLQL 2962
ALTALNLSSNELDG AIRSCAPHLG L+SLESLDLSCNRID LLGLP+LP LRRLLVPYNRL +LDGVQALASSLT+LDAR+NRIAGP G HAP LAALGRL++L LAS G RG NP+CACR YR ++FAAARSL+TLDG++A + TAA A XXXXXXXXXXXXXX AA R R+AA+ + A A A+ P A GGGRG XXXXXX EG GD G G+R+G G D +S V+ V G+ AEE+GLLSRLRSVAQEARLEVMDSRLQDLH D AR A RR N +R G P SRSNPW Q A Q R GK VPR ++ G GST +R AV D PVR T+ F + G + G+ A AGP A E + A A C CC R +D EL AA G G S T + +P + TG F SVG AVAAAA+VGATAAA+SG D RRLA F RWAR++DRA+A XX L EA+RER+AWESLQ LE SAAAREREARE+A+E GR E+RS AAA RSA++AA++L L+L
Sbjct: 10 ALTALNLSSNELDGEAIRSCAPHLGPLASLESLDLSCNRIDGLLGLPFLPGLRRLLVPYNRLTSLDGVQALASSLTHLDARDNRIAGPAGAHAPHLAALGRLESLALASVG---RGRRVQPNPICACRGYREEVFAAARSLKTLDGESASFVLEDRETAATPAEAAAKXXXXXXXXXXXXXXXXXXXXXXDTPAASEPRGGRNAAA-------ETAIPVAAVRRASGPIPXXXXXXXXXCGGGXXXXXXXXXXXXXXXXXXXXXXXRPGVAAEGGGGRGRCLXXXXXXXTSSPRVAVQSAGVESSSSDAGWS------------------EGDGDSLQESHAEGFDADSFGVVESGGRVDTEETAARAVPGRRTGGGGGRGNFDGESGVREVLGEDVAEEHGLLSRLRSVAQEARLEVMDSRLQDLHDKQAQDTARHAATVAKATAALRRSVSNTTRGQTHEAGAAGPTRRTSRSNPWNQHGAPQQRGVAGKGVVPR--TVRGEGSTVPLRSNGNTAVADRPVRWTHGPGDFAAIG---------KGGFGSRGGVTQPQVAVAGPEVACGREGSVA--ARCSCC-RGEDTPELTLQAAGGG----------------GSSALWNAGTGKSGSPPY--------------TGGF-----------------------------------SVGGAVAAAALVGATAAALSGHDGRRLASSFSRWARDTDRARAAAAAVXXDAALDGARREAERERKAWESLQVALERSAAAREREARESAQEEGREEMRSMAAACRSAKEAASSLELRL 709
BLAST of mRNA_P-littoralis_Contig17.69.34 vs. uniprot
Match: A0A835ZJ80_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJ80_9STRA) HSP 1 Score: 130 bits (328), Expect = 1.020e-26 Identity = 81/172 (47.09%), Postives = 104/172 (60.47%), Query Frame = 2
Query: 542 PSSLVSLSLHSNRVSSLEGFSSLTALTALNLSSNELDGAAIRSCAPHLGGLSSLESLDLSCNRIDALLGLPYLPRLRRLLVPYNRLGALDGVQALASSLTYLDARENRIAGPTGTHAPQLAALGRLKNLVLASRGGRGRGGGWHSNPVCACRDYRRDIFAAA--RSLETLDG 1051
P L+SL+LH N ++SL+G +LT L+LSSN+L A+I +CAPHLG L SL +L L+ NR+ AL+GLP L L LL+PYN L +L+G+QALA L LD R N +A P HA L +L L++L L S G +NPVC Y AAA LE LDG
Sbjct: 64 PQHLLSLNLHGNALTSLQGLERYPSLTQLDLSSNDLTTASIAACAPHLGHLHSLSTLSLAANRVGALVGLPCLAHLHTLLLPYNALTSLEGLQALAPRLRTLDLRANALAPPLAPHARVLVSLSSLRDLALRSADGA------CANPVCLEPAYGAAALAAAGVARLERLDG 229 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig17.69.34 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig17.69.34 >prot_P-littoralis_Contig17.69.34 ID=prot_P-littoralis_Contig17.69.34|Name=mRNA_P-littoralis_Contig17.69.34|organism=Pylaiella littoralis U1_48|type=polypeptide|length=1475bp MFSRERGGSVPQQSPPSASEGGRVASDKVKVTAASSSSSSEAAAAGISRVback to top mRNA from alignment at P-littoralis_Contig17:347344..371886- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig17.69.34 ID=mRNA_P-littoralis_Contig17.69.34|Name=mRNA_P-littoralis_Contig17.69.34|organism=Pylaiella littoralis U1_48|type=mRNA|length=24543bp|location=Sequence derived from alignment at P-littoralis_Contig17:347344..371886- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig17:347344..371886- >mRNA_P-littoralis_Contig17.69.34 ID=mRNA_P-littoralis_Contig17.69.34|Name=mRNA_P-littoralis_Contig17.69.34|organism=Pylaiella littoralis U1_48|type=CDS|length=4425bp|location=Sequence derived from alignment at P-littoralis_Contig17:347344..371886- (Pylaiella littoralis U1_48)back to top |