prot_P-littoralis_Contig17.62.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig17.62.1
Unique Nameprot_P-littoralis_Contig17.62.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length768
Homology
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BLAST of mRNA_P-littoralis_Contig17.62.1 vs. uniprot
Match: D7FK60_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FK60_ECTSI)

HSP 1 Score: 227 bits (579), Expect = 6.390e-61
Identity = 282/646 (43.65%), Postives = 317/646 (49.07%), Query Frame = 0 
Query:  142 TPPRGFGLRHRPAQDGKRFVREVQRLGVKGNWPGALSLLRTAEGDGARVNSVMYNATIAALSKSGRWKEAMAILDGMEEEATGGGAARDVMSFSSAMAACRAA--GKAEEAHGLLSRMMSQWKKQRREAAGVKGGGNGSSGISGSGGDVKPNLWCFNTVLSALAKRGLSRRALSVVEVDMADAKVTPDLRTWSTLIDACRAGGWSGQQTVALISRMRSAGVEPDIWCFNHCLNATSRGGEWELAFGLLKDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDAGTEAPPNVWNFNISIDAHSKSGEWEKAVDLLRRAMPAAGVKXXXXXXXXXXXXXXXXXXXXXALALWDEMTAS--PSSLSSSSPATTXXXXXXTAKATVVPNDYTYSIIIDVCAKAGLVDRALALLSESHAAGTFPTLFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFRGRQL----------GERELGLALGLTEEMKRNGVAPTNFSHSAAITLCAIAGQHERALELFEELRVAAASGSGDAEMPPPNEAVFTAIIDSC---------GGSGQWETAMRFLEDMEEVSGVAPTLAAXXXXXXXXXXXXXXXLGHSLLERMR-LGGVDPEVSSMNALIRGL 763
            +PPR   LR+RPA+DGKRFVR  QRLG +G W   LSLLR AEGDGA VN +MYNA I ALSKS                                  ACRAA  G+ +EA+G+LSRM ++                        G  VKPN+ CFNTVL+A AK G SR+ALS+VE DM +A                                                       GEWELAFGLL+D  XXXXXXXXXXXXXXXXXXXXXXXXXXX        + G+ AP                      V LLR+ MPAAGV X   XXXXXXXXXXXXXXXXX  ALWDE  A+  PS+L+S +                                               AAG  P L  XXXXXXXXXXXXXXXXXXXXXXX                   FRG +           GEREL LALGL EEMK  G+ PT+FSHSAAI LC  A QHERALELFEELR      SG A     +E  FTAIIDSC         GG G+WETA+  L++ME  SGVAP++A                LG SLL RM  + GVDP VSSMNALIRGL
Sbjct:   81 SPPRRL-LRNRPAEDGKRFVRVAQRLGGQGKWERVLSLLRQAEGDGAVVNHIMYNAAIGALSKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXE----ACRAARGGRPDEAYGILSRMTART----------------------GGKSVKPNMRCFNTVLAAFAKSGRSRQALSLVEEDMVNAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEWELAFGLLEDMGXXXXXXXXXXXXXXXXXXXXXXXXXXXPALLRAMKEGGSTAPXXXXXXXXXXXXXXXXXXXXXXVSLLRKDMPAAGVAXDVTXXXXXXXXXXXXXXXXXXXALWDEARAALPPSALNSHA---------------------XXXXXXXXXXXXXXXXXXXXXXXXXXAAGLPPNLRSXXXXXXXXXXXXXXXXXXXXXXXMEEAGLEPDVVSFTSAIAAFRGGKAAXXXXXXXXXGERELSLALGLLEEMKSRGLPPTSFSHSAAIKLCTDANQHERALELFEELRA-----SGQAA----DEPAFTAIIDSCARHSGSGSGGGEGRWETAVALLDEME-ASGVAPSVATFNGAIRACCNGGKWHLGSSLLRRMSAVDGVDPNVSSMNALIRGL 668
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BLAST of mRNA_P-littoralis_Contig17.62.1 vs. uniprot
Match: A0A835ZF41_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF41_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 6.470e-5
Identity = 38/114 (33.33%), Postives = 63/114 (55.26%), Query Frame = 0 
Query:  150 RHRPAQDGKRFVREVQRLGVKGNWPGALSLLRTAEGDGARVNSVMYNATIAALSKSGRWKEAMAILDGMEEEATGG--------GAARDVMSFSSAMAACRAAGKAEEAHGLLS 255
            R +P +D ++ +R +Q+LG   +W  A+ +       G R++  +Y+  + AL++SGRW+EA A+L+  E  A GG        G A D   F++A++AC    + E A  LLS
Sbjct:    6 RPQPIRDEQQLLRAIQKLGRDQDWQQAMDVFARGRQAGIRMSLRVYSGALTALARSGRWREATALLE--EALADGGSGXXXXXXGIAPDAALFTAAISACEEDAQWESAVRLLS 117
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig17.62.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FK60_ECTSI6.390e-6143.65Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZF41_9STRA6.470e-533.33Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 352..411
e-value: 2.5E-6
score: 27.4
coord: 287..338
e-value: 0.0024
score: 17.9
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 565..594
e-value: 2.6E-4
score: 21.0
coord: 443..461
e-value: 0.39
score: 11.1
coord: 193..220
e-value: 2.9E-4
score: 20.9
coord: 233..259
e-value: 0.83
score: 10.0
coord: 473..499
e-value: 0.031
score: 14.5
IPR002885Pentatricopeptide repeatPFAMPF12854PPR_1coord: 525..554
e-value: 2.1E-6
score: 27.4
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 566..599
e-value: 3.8E-6
score: 24.7
coord: 530..563
e-value: 7.0E-5
score: 20.7
coord: 193..220
e-value: 0.0013
score: 16.7
coord: 720..751
e-value: 4.4E-4
score: 18.2
coord: 439..472
e-value: 0.0011
score: 17.0
coord: 366..399
e-value: 0.0014
score: 16.7
coord: 684..717
e-value: 1.9E-4
score: 19.4
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 327..362
score: 9.29524
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 435..470
score: 10.13926
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 528..562
score: 9.96388
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 363..397
score: 9.415814
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 563..597
score: 11.005202
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 191..221
score: 9.898111
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 681..715
score: 8.769097
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 598..636
score: 8.659485
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 717..751
score: 10.172144
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 394..501
e-value: 9.2E-18
score: 66.4
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 281..392
e-value: 1.9E-18
score: 69.0
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 155..269
e-value: 3.5E-15
score: 57.8
coord: 616..671
e-value: 8.8E-6
score: 27.2
coord: 512..615
e-value: 3.6E-22
score: 80.6
coord: 675..767
e-value: 4.8E-19
score: 70.4
IPR033443Pentacotripeptide-repeat region of PRORPPFAMPF17177PPR_longcoord: 622..761
e-value: 1.1E-9
score: 37.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 128..144
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 116..155
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 35..54
NoneNo IPR availablePANTHERPTHR47941PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIALcoord: 522..764
coord: 184..500
coord: 351..664

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig17contigP-littoralis_Contig17:306247..308998 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig17.62.1mRNA_P-littoralis_Contig17.62.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig17 306180..309673 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig17.62.1 ID=prot_P-littoralis_Contig17.62.1|Name=mRNA_P-littoralis_Contig17.62.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=768bp
MATLQARTVMRAPVSRACRRSRSCSRSTSVSAAPLLLATRREGPTRAAAP
PPTTAPPATSFFFSFSTFHSYSTVKQHPSTCSCCCRGYSTVPARRTTTSG
SSTPCAPKAGKSKPAAAAVAAAATGSVSPRSPPPPLPPPSSTPPRGFGLR
HRPAQDGKRFVREVQRLGVKGNWPGALSLLRTAEGDGARVNSVMYNATIA
ALSKSGRWKEAMAILDGMEEEATGGGAARDVMSFSSAMAACRAAGKAEEA
HGLLSRMMSQWKKQRREAAGVKGGGNGSSGISGSGGDVKPNLWCFNTVLS
ALAKRGLSRRALSVVEVDMADAKVTPDLRTWSTLIDACRAGGWSGQQTVA
LISRMRSAGVEPDIWCFNHCLNATSRGGEWELAFGLLKDMGRAGLQPDCW
SYSAAMKTCVNAEQWKIVPVLLEAMVDAGTEAPPNVWNFNISIDAHSKSG
EWEKAVDLLRRAMPAAGVKPNVVSYGSCLDAARKAGQWEVALALWDEMTA
SPSSLSSSSPATTKATKATTAKATVVPNDYTYSIIIDVCAKAGLVDRALA
LLSESHAAGTFPTLFMFNSAIDACSRAGRWEHALGLLRDIGEAGLRPDAI
SYTSVIAAFRGRQLGERELGLALGLTEEMKRNGVAPTNFSHSAAITLCAI
AGQHERALELFEELRVAAASGSGDAEMPPPNEAVFTAIIDSCGGSGQWET
AMRFLEDMEEVSGVAPTLAAFNGAIRACCSGGRWDLGHSLLERMRLGGVD
PEVSSMNALIRGLGSRK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf
IPR033443PPR_long