mRNA_P-littoralis_Contig17.46.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig17.46.1
Unique NamemRNA_P-littoralis_Contig17.46.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig17.46.1 vs. uniprot
Match: D8LLJ6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLJ6_ECTSI)

HSP 1 Score: 279 bits (714), Expect = 4.970e-95
Identity = 131/142 (92.25%), Postives = 139/142 (97.89%), Query Frame = 1
Query:    1 QIVTLRPRTNPTDLTNIFRRAAAVVLEEGGVVRSVVNHGIRVLPYRFHSRHDIKENDNRWFTSGRWASAYYDASPAVAKKMEQQLWAEDKVIRVSTRRPSTKMDRISSTHERSNPWDMEWRKRNGIEQPVHNRRRTPPKKKW 426
            QIVTLRPRTNPTDLTNIFRRAAAV+LEEGGVVRSV NHG+RVLPYRFHS+HDIKE D+RWF+SGRWASAYYDASPAVAKKME+QLWAEDKVIRVSTRRP+TKMDRI+STHERSNPWDMEWR RNGIEQPVHNRRRTPPKKKW
Sbjct:    6 QIVTLRPRTNPTDLTNIFRRAAAVILEEGGVVRSVANHGVRVLPYRFHSKHDIKEKDDRWFSSGRWASAYYDASPAVAKKMEEQLWAEDKVIRVSTRRPATKMDRIASTHERSNPWDMEWRNRNGIEQPVHNRRRTPPKKKW 147          
BLAST of mRNA_P-littoralis_Contig17.46.1 vs. uniprot
Match: A0A835Z0N7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0N7_9STRA)

HSP 1 Score: 101 bits (251), Expect = 3.210e-24
Identity = 49/118 (41.53%), Postives = 75/118 (63.56%), Query Frame = 1
Query:    4 IVTLRPRTNPTDLTNIFRRAAAVVLEEGGVVRSVVNHGIRVLPYRFHSRHDIKENDNRWFTSGRWASAYYDASPAVAKKMEQQLWAEDKVIRVSTRRPSTKMDRISSTHERSNPWDME 357
            + T + RT P  LT ++RR    VLE+GG+VR V NHG++ L YRF +R  +  ++NR+ T GRW S Y+DA P    K++  L  +D  +R +T +P  KM+ IS+ H+ +NPW+ +
Sbjct:    7 VFTCKWRTPPEQLTRLYRRLCNTVLEDGGMVRCVENHGVKDLAYRFRARTAMSGSENRYHTRGRWVSMYFDARPETLDKIDADLKMQDFYLRSNTIKPVVKMNWISTRHK-TNPWERD 123          
BLAST of mRNA_P-littoralis_Contig17.46.1 vs. uniprot
Match: A0A6S8YXD6_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S8YXD6_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 3.450e-19
Identity = 41/115 (35.65%), Postives = 75/115 (65.22%), Query Frame = 1
Query:    4 IVTLRPRTNPTDLTNIFRRAAAVVLEEGGVVRSVVNHGIRVLPYRFHSRHDIKENDNRWFTSGRWASAYYDASPAVAKKMEQQLWAEDKVIRVSTRRPSTKMDRISSTHERSNPW 348
            ++T +   +   LTN  +  +++V+E GG+VR+V NHGIR LP+RF +R+  KE  NR++  GR+ S +YDASP    ++E ++  +D+++R +  +   K+  I++ +E+ NP+
Sbjct:    7 VLTAKNTASFASLTNTVKSISSIVVESGGIVRTVQNHGIRNLPHRFKARYPDKEG-NRYYKEGRFISVWYDASPRTLNQVENEIRLDDQILRYTHLKARNKLWYINNPNEKKNPY 120          
BLAST of mRNA_P-littoralis_Contig17.46.1 vs. uniprot
Match: A0A7S2IGM9_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IGM9_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 1.750e-18
Identity = 41/105 (39.05%), Postives = 69/105 (65.71%), Query Frame = 1
Query:   34 TDLTNIFRRAAAVVLEEGGVVRSVVNHGIRVLPYRFHSRHDIKENDNRWFTSGRWASAYYDASPAVAKKMEQQLWAEDKVIRVSTRRPSTKMDRISSTHERSNPW 348
            T LT + +  ++ V+E GG+VR+V NHGIR LP+RF +++  KE  NR++  GR+ S +YDASP V  K+E ++  +D+++R +  +   K+  I+   E+ NP+
Sbjct:   17 TSLTKLMKTISSTVVENGGIVRTVQNHGIRNLPHRFKAKYPDKEG-NRYYKKGRFISVWYDASPRVLAKVENEIRLDDQILRHTHLKARNKLWYINIASEKKNPY 120          
BLAST of mRNA_P-littoralis_Contig17.46.1 vs. uniprot
Match: A0A7S1YM88_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1YM88_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 4.180e-17
Identity = 40/103 (38.83%), Postives = 68/103 (66.02%), Query Frame = 1
Query:   40 LTNIFRRAAAVVLEEGGVVRSVVNHGIRVLPYRFHSRHDIKENDNRWFTSGRWASAYYDASPAVAKKMEQQLWAEDKVIRVSTRRPSTKMDRISSTHERSNPW 348
            LT++ +  +  V+E GG+VRSV NHGIR L +RF +RH  ++   R F  GR+ S YYD+SPA+ +++ + L  ++ V+R +  R   K+D I++ +++ NP+
Sbjct:   19 LTSLMKEISLKVVENGGIVRSVQNHGIRDLAHRFRARHPDRDG-TRLFQKGRFISVYYDSSPAIQEEVGEILVMDENVLRATHLRARNKLDTINNPYQKKNPY 120          
BLAST of mRNA_P-littoralis_Contig17.46.1 vs. uniprot
Match: A0A6T7JZ88_9STRA (Hypothetical protein n=2 Tax=Bacillariophyta TaxID=2836 RepID=A0A6T7JZ88_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 4.690e-17
Identity = 40/104 (38.46%), Postives = 69/104 (66.35%), Query Frame = 1
Query:   37 DLTNIFRRAAAVVLEEGGVVRSVVNHGIRVLPYRFHSRHDIKENDNRWFTSGRWASAYYDASPAVAKKMEQQLWAEDKVIRVSTRRPSTKMDRISSTHERSNPW 348
            +LTN+ +  +  V+E GG+VRSV NHGIR LP+RF +++  KE  NR++  GR+ S +YDASP   ++++  L  +++V+R +  +P  K+   +  +E+ NP+
Sbjct:   18 NLTNLMKTVSLKVVERGGIVRSVQNHGIRDLPHRFKAKYPDKEG-NRYYKKGRFISVFYDASPHAREEVQAILDLDEEVLRNTHLKPRNKVTYANIVNEKKNPY 120          
BLAST of mRNA_P-littoralis_Contig17.46.1 vs. uniprot
Match: A0A1E7FMF6_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FMF6_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 1.450e-16
Identity = 39/115 (33.91%), Postives = 72/115 (62.61%), Query Frame = 1
Query:    4 IVTLRPRTNPTDLTNIFRRAAAVVLEEGGVVRSVVNHGIRVLPYRFHSRHDIKENDNRWFTSGRWASAYYDASPAVAKKMEQQLWAEDKVIRVSTRRPSTKMDRISSTHERSNPW 348
            +++ +  T+   LT + ++ +  V+E GG+VRS+ NHG+R  P+RF +++       R++  GR+ S YYD++P   K++E  L   D+V+RV+  +  +K+D I+  HE+ NP+
Sbjct:    7 VLSTKHTTHFKALTALMKQVSLKVVENGGIVRSIQNHGLRTFPHRFKAKYPDYLTQQRYYEQGRFISIYYDSNPTTLKQVETVLTMNDQVLRVTHLKSRSKLDWINYKHEK-NPY 120          
BLAST of mRNA_P-littoralis_Contig17.46.1 vs. uniprot
Match: K0TLA5_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TLA5_THAOC)

HSP 1 Score: 81.3 bits (199), Expect = 1.480e-16
Identity = 39/115 (33.91%), Postives = 73/115 (63.48%), Query Frame = 1
Query:    4 IVTLRPRTNPTDLTNIFRRAAAVVLEEGGVVRSVVNHGIRVLPYRFHSRHDIKENDNRWFTSGRWASAYYDASPAVAKKMEQQLWAEDKVIRVSTRRPSTKMDRISSTHERSNPW 348
            ++T +  T+   LT++ +  +  ++E GG+VRS+ NHGIR LP+RF S++  +E  NR++  GR+ S +YD++P  AK++E  L   ++++R +  R S + + ++   E  NP+
Sbjct:   45 LMTAKNTTHYNLLTSLMKEVSHKIVENGGIVRSIQNHGIRQLPHRFKSKYADREG-NRYYEKGRFISVFYDSNPVTAKQVETILNLNEEILRNTHLRASNRFNEVNDLLESRNPY 158          
BLAST of mRNA_P-littoralis_Contig17.46.1 vs. uniprot
Match: A0A448Z259_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z259_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 1.720e-16
Identity = 37/99 (37.37%), Postives = 63/99 (63.64%), Query Frame = 1
Query:   52 FRRAAAVVLEEGGVVRSVVNHGIRVLPYRFHSRHDIKENDNRWFTSGRWASAYYDASPAVAKKMEQQLWAEDKVIRVSTRRPSTKMDRISSTHERSNPW 348
             +  +  V+E GG++RS+ NHG+R  P+RF +++       R++  GR+ S YYDA+PA  KK+E  L   D+V+RV+  +  +K+D I+  H++ NP+
Sbjct:    1 MKEVSLKVVENGGIIRSIQNHGLRTFPHRFKAKYPDYLTQQRYYEQGRFISVYYDANPATLKKVENILNMNDQVLRVTHLKSRSKLDWINYRHDK-NPY 98          
BLAST of mRNA_P-littoralis_Contig17.46.1 vs. uniprot
Match: A0A7S2MAY0_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2MAY0_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 7.270e-15
Identity = 35/118 (29.66%), Postives = 72/118 (61.02%), Query Frame = 1
Query:    4 IVTLRPRTNPTDLTNIFRRAAAVVLEEGGVVRSVVNHGIRVLPYRFHSRHDIKENDNRWFTSGRWASAYYDASPAVAKKMEQQLWAEDKVIRVSTRRPSTKMDRISSTHERSNPWDME 357
            ++T +   +  +LT + +  +  ++  GG+VRS+ NHG+R LP+RF +++  +E  NR++  GR+ S +YDASP + +++E  L  +++++R +  +   K   +++  E  NP+  E
Sbjct:    7 LMTAKNTAHYNNLTALMKDISLKIVNNGGIVRSIQNHGVRQLPHRFRAKYADREG-NRYYEKGRFVSVFYDASPGIMRQVEGILNLDEQILRNTHLKGRNKFMDVNNVREAKNPYIQE 123          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig17.46.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D8LLJ6_ECTSI4.970e-9592.25Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z0N7_9STRA3.210e-2441.53Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6S8YXD6_9STRA3.450e-1935.65Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2IGM9_9STRA1.750e-1839.05Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S1YM88_9STRA4.180e-1738.83Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A6T7JZ88_9STRA4.690e-1738.46Hypothetical protein n=2 Tax=Bacillariophyta TaxID... [more]
A0A1E7FMF6_9STRA1.450e-1633.91Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
K0TLA5_THAOC1.480e-1633.91Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
A0A448Z259_9STRA1.720e-1637.37Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S2MAY0_9STRA7.270e-1529.66Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig17contigP-littoralis_Contig17:214132..215442 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LLJ6
PFAMsRibosomal_S6
Model size429
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue8.14e-96
EggNOG OGs2E67R@1|root,2SCYQ@2759|Eukaryota
Ec32 ortholog descriptionTranslation elongation factor EF1B/ribosomal protein S6
Ec32 orthologEc-04_005610.1
DescriptionRibosomal protein S6
Cds size429
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789815.4079587-CDS-P-littoralis_Contig17:214131..2143141680789815.4079587-CDS-P-littoralis_Contig17:214131..214314Pylaiella littoralis U1_48CDSP-littoralis_Contig17 214132..214314 -
1680789815.4224055-CDS-P-littoralis_Contig17:215196..2154421680789815.4224055-CDS-P-littoralis_Contig17:215196..215442Pylaiella littoralis U1_48CDSP-littoralis_Contig17 215197..215442 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig17.46.1prot_P-littoralis_Contig17.46.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig17 214132..215442 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig17.46.1

>prot_P-littoralis_Contig17.46.1 ID=prot_P-littoralis_Contig17.46.1|Name=mRNA_P-littoralis_Contig17.46.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=143bp
QIVTLRPRTNPTDLTNIFRRAAAVVLEEGGVVRSVVNHGIRVLPYRFHSR
HDIKENDNRWFTSGRWASAYYDASPAVAKKMEQQLWAEDKVIRVSTRRPS
TKMDRISSTHERSNPWDMEWRKRNGIEQPVHNRRRTPPKKKW*
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mRNA from alignment at P-littoralis_Contig17:214132..215442-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig17.46.1 ID=mRNA_P-littoralis_Contig17.46.1|Name=mRNA_P-littoralis_Contig17.46.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1311bp|location=Sequence derived from alignment at P-littoralis_Contig17:214132..215442- (Pylaiella littoralis U1_48)
CAGATCGTGACGCTGCGGCCAAGGACGAACCCCACGGATCTCACAAACAT CTTCAGGCGGGCAGCCGCGGTCGTGCTCGAGGAGGGCGGGGTCGTGCGTT CGGTGGTCAACCACGGAATCAGGGTGCTGCCCTACCGGTTCCACAGCAGA CACGACATCAAGGAGAACGACAACCGCTGGTTCACGTCAGGCCGCTGGGC CAGCGCGTACTACGACGCCAGCCCGGCGGTGGCTAAGAAGATGGAGGTGG GTTGGGTATCAGAGCGGGGTAGGTCAGCGAGGGGGTCGCTTGTGTCGTGG TTTTGGGAGGAGATGGGAGTGACAGCAGTGGCGTGGGGTGGGAAGATAAT GAGACTTTTGTTTTTGCTGACACACACCCGTTTTTTTGGTACCAGGTATG ATTCTAGACGGCCGTAAACAAAAAACCAAAAAAAATCGAGTCTTTCAGCA GCAGCCCACCAAGGGTCGCAACGTCGAGTCTTGGGGGGATGATTTAGGGC CTCGGAACTGCCCGAAACGAACGGTCATGAAATCGCAACCTGCCTGAGCC CGAAATCTAGCCCCACCCGAAACGAGGCAGAAAGCCTCGACCCGCCCTCT TGATGGACCTGAATGCACGCTAAACATTGTCGACGAGAAGGAGGGCGGGC AGATCTGAGACCCCTTCTCAATCCTCCCCAGGAATTACCTCCGGTACCAT CCGTGGACTCCGGCTGACTCCCCTGTCTCCGCCCCCGCTCTTGCTAGACG CTTACGTAATGCATTTTCACTCTGGGTTGAGTTTCTTTCGTCATACTTCG TACAGAATATTGCGTACGGCGGGGATGTTGCACACGGCGGTTCTGGCTGC ACTGTCTTATGTTTTGCTTCTGTGCTTACGGTCAACACAGCGACCTGCAC ACACACACACTCTAACCCCCCCCCCCCCTCCCGACGCTCGCTTCACGAAT CCAAGCTGCATATCGCCTCAACCGCCCTCCATTCACCAAATCTCCTCTCT GGACCTACAATACCCCCCTCCCTGTCGGTCGGACCGCATGCTTTTTGTTC CCGCTCGCCCGCCCGCCTCTTGTGCCCCCCCCGTGTCGCTCTCTCTCGCC TGGTTGTTCTTGTTTTTGACACGAGCAGCAACAACTATGGGCAGAAGACA AGGTGATCCGCGTTTCCACCCGGCGACCATCGACCAAGATGGACCGGATA TCGTCCACCCACGAGCGGTCCAACCCTTGGGACATGGAGTGGCGGAAACG CAACGGGATCGAGCAGCCCGTGCACAACCGACGCCGCACACCACCCAAGA AAAAGTGGTAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig17:214132..215442-

>mRNA_P-littoralis_Contig17.46.1 ID=mRNA_P-littoralis_Contig17.46.1|Name=mRNA_P-littoralis_Contig17.46.1|organism=Pylaiella littoralis U1_48|type=CDS|length=429bp|location=Sequence derived from alignment at P-littoralis_Contig17:214132..215442- (Pylaiella littoralis U1_48)
CAGATCGTGACGCTGCGGCCAAGGACGAACCCCACGGATCTCACAAACAT
CTTCAGGCGGGCAGCCGCGGTCGTGCTCGAGGAGGGCGGGGTCGTGCGTT
CGGTGGTCAACCACGGAATCAGGGTGCTGCCCTACCGGTTCCACAGCAGA
CACGACATCAAGGAGAACGACAACCGCTGGTTCACGTCAGGCCGCTGGGC
CAGCGCGTACTACGACGCCAGCCCGGCGGTGGCTAAGAAGATGGAGCAAC
AACTATGGGCAGAAGACAAGGTGATCCGCGTTTCCACCCGGCGACCATCG
ACCAAGATGGACCGGATATCGTCCACCCACGAGCGGTCCAACCCTTGGGA
CATGGAGTGGCGGAAACGCAACGGGATCGAGCAGCCCGTGCACAACCGAC
GCCGCACACCACCCAAGAAAAAGTGGTAG
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