mRNA_P-littoralis_Contig1025.17.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1025.17.1
Unique NamemRNA_P-littoralis_Contig1025.17.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1025.17.1 vs. uniprot
Match: D7FXD3_ECTSI (DDE-1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXD3_ECTSI)

HSP 1 Score: 155 bits (391), Expect = 4.580e-44
Identity = 78/166 (46.99%), Postives = 108/166 (65.06%), Query Frame = 1
Query:    1 GKEKLRYTVVLAVRGDGQKVRPRIIYKGNPFVGGTNKS-GSAKKPGKNSLSYEHLPDKRTSFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTS 492
            GKEK R+T+ LAV GD +KV  R I+KG P +       G A +P KNS+++E LP+ R+  GYP GG+S GVQ+ SWCD  +   W+   +  RP + S   QRP +LVLDDF+CH+++ F  +L   A T+V+ + GGLTP+ QPLDR +NK  KR +R  YT+
Sbjct:   87 GKEKERFTLCLAVTGDCKKVPLRTIFKGTPLIPPDRPGKGKATQPRKNSIAWEMLPENRSKNGYPVGGMSFGVQEKSWCDLRECKLWIKHSWTLRPNNGSLVKQRPCILVLDDFKCHKDDTFIAELKRQANTIVIFIPGGLTPLLQPLDRMLNKRMKRLLRGMYTN 252          
BLAST of mRNA_P-littoralis_Contig1025.17.1 vs. uniprot
Match: A0A6H5JUK2_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK2_9PHAE)

HSP 1 Score: 154 bits (388), Expect = 5.500e-42
Identity = 77/166 (46.39%), Postives = 111/166 (66.87%), Query Frame = 1
Query:    1 GKEKLRYTVVLAVRGDGQKVRPRIIYKGNPFVG-GTNKSGSAKKPGKNSLSYEHLPDKRTSFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTS 492
            GKEK R+T+VLAV  DG+KV PRII+KG PF+    +  G +  P KNS+++E  P  R    +PA G+S GVQ+ SW D  + + W++  +  RP + S   QRP +LVLDDF+CH++E +   L   A T+V+++ GGLTP+ QPLDR +NK+ KR +R +YT+
Sbjct:  149 GKEKERFTLVLAVMADGKKVSPRIIFKGTPFIPPAVSGKGKSTLPRKNSVAWEIHPANRAKHDHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGYIAALKRDANTIVIVIPGGLTPLLQPLDRMLNKQMKRLLRGKYTA 314          
BLAST of mRNA_P-littoralis_Contig1025.17.1 vs. uniprot
Match: A0A6H5L4U1_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4U1_9PHAE)

HSP 1 Score: 149 bits (377), Expect = 1.150e-41
Identity = 76/166 (45.78%), Postives = 109/166 (65.66%), Query Frame = 1
Query:    1 GKEKLRYTVVLAVRGDGQKVRPRIIYKGNPFVGGT-NKSGSAKKPGKNSLSYEHLPDKRTSFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTS 492
            GKEK R+T+VLAV  DG+KV PRII+KG PF+  T +  G +  P KNS+++E  P  R    +PA G+S GVQ  SW D  + + W++  +  RP + S   QRP +LVLDDF+CH++E F   L   A T+++ + GG+T + QPLDR +NK+ KR +R +YT+
Sbjct:   10 GKEKERFTLVLAVMADGKKVSPRIIFKGTPFIPPTVSGKGKSTLPRKNSVAWEIHPANRAKHAHPANGMSFGVQGKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIIIFIPGGMTLLLQPLDRLLNKQMKRLLRGKYTA 175          
BLAST of mRNA_P-littoralis_Contig1025.17.1 vs. uniprot
Match: A0A6H5K6L9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6L9_9PHAE)

HSP 1 Score: 154 bits (388), Expect = 1.290e-41
Identity = 79/166 (47.59%), Postives = 110/166 (66.27%), Query Frame = 1
Query:    1 GKEKLRYTVVLAVRGDGQKVRPRIIYKGNPFVGGT-NKSGSAKKPGKNSLSYEHLPDKRTSFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTS 492
            GKEK R+T+VLAV  DG+KV PRII+KG PF   T +  G +  P KNS+++E  P  R   G+PA G+S GVQ+ SW D  + + W++  +  RP + S   QRP +LVLDDF+CH++E F   L   A T+V+ + G LTP+ QPLDR +NK+ KR +R +YT+
Sbjct:  149 GKEKERFTLVLAVMADGKKVSPRIIFKGTPFTPPTVSGKGKSTLPRKNSVAWEIHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIVIFIPGRLTPLLQPLDRMLNKQMKRLLRRKYTA 314          
BLAST of mRNA_P-littoralis_Contig1025.17.1 vs. uniprot
Match: A0A6H5KE45_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE45_9PHAE)

HSP 1 Score: 153 bits (387), Expect = 7.830e-41
Identity = 82/167 (49.10%), Postives = 108/167 (64.67%), Query Frame = 1
Query:    1 GKEKLRYTVVLAVRGDGQKVRPRIIYKGNPFVG-GTNKSGSAKKPGKNSLSYEHLPDKRTSFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRP--GSTSRDQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTS 492
            GKEK R+T+ LAV  DG KV  RII+KG PFV   T   G A +P KNS+++E LP  R+  G P GG+S GVQ+ SWCD  +   W+   +  RP  GS  R QR  +LVLDDF+CH+++ F   L   A T+V+ + GGLTP+ QPLDR +NK+ KR +R  YT+
Sbjct:  262 GKEKERFTLCLAVSADGTKVPLRIIFKGTPFVPPATPGKGKATQPRKNSIAWEVLPANRSKHGLPVGGMSFGVQEKSWCDLREYKLWIKDSWKLRPNNGSVVR-QRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGMYTA 427          
BLAST of mRNA_P-littoralis_Contig1025.17.1 vs. uniprot
Match: A0A6H5JHT8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT8_9PHAE)

HSP 1 Score: 154 bits (389), Expect = 1.050e-40
Identity = 77/166 (46.39%), Postives = 110/166 (66.27%), Query Frame = 1
Query:    1 GKEKLRYTVVLAVRGDGQKVRPRIIYKGNPFVGGT-NKSGSAKKPGKNSLSYEHLPDKRTSFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTS 492
            G EK R+T+VLAV  DG+KV PRII++G PF+  T +  G + +P KN +++E  P  R   G+PA G+S GVQ+ SW D  + + W++  +  RP + S   QRP +LVLDDF+CH +E F   L   A T+V+ + GGLTP+ QPLDR +NK+ KR +R +YT+
Sbjct:  344 GNEKERFTLVLAVTADGKKVSPRIIFEGTPFIPPTVSGKGKSTRPRKNPVAWEMHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPRILVLDDFKCHNDEGFIAALKRDANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGKYTA 509          
BLAST of mRNA_P-littoralis_Contig1025.17.1 vs. uniprot
Match: A0A6H5KII4_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KII4_9PHAE)

HSP 1 Score: 150 bits (378), Expect = 2.170e-40
Identity = 77/166 (46.39%), Postives = 110/166 (66.27%), Query Frame = 1
Query:    1 GKEKLRYTVVLAVRGDGQKVRPRIIYKGNPFVGGT-NKSGSAKKPGKNSLSYEHLPDKRTSFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTS 492
            G+EK R+T+VLAV  DG+KV  RII+ G PF+  T +  G +  P KNS+++E  P  R   G+PA G+S GVQ+ SW D  + + W +  +  RP + S   QRP +LVLDDF+CH++E F   L   A T+V+ + GGLTP+ QPLDR +NK+ KR +R++YT+
Sbjct:   83 GEEKERFTLVLAVTADGKKVSLRIIFMGTPFIPPTVSGKGKSTLPRKNSVAWEMHPTNRAKHGHPANGMSFGVQEKSWSDQRECNGWTSGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIVIFIPGGLTPLLQPLDRMLNKQTKRLLRSKYTA 248          
BLAST of mRNA_P-littoralis_Contig1025.17.1 vs. uniprot
Match: A0A6H5K8Y4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Y4_9PHAE)

HSP 1 Score: 151 bits (382), Expect = 2.020e-39
Identity = 81/167 (48.50%), Postives = 108/167 (64.67%), Query Frame = 1
Query:    1 GKEKLRYTVVLAVRGDGQKVRPRIIYKGNPFVG-GTNKSGSAKKPGKNSLSYEHLPDKRTSFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRP--GSTSRDQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTS 492
            GKEK R+T+ LAV  DG+KV  RII+KG PFV   T   G A +P KNS+++E LP  R+  G P GG+S GVQ+ SWCD  +   W+   +  RP  GS  R QR  +LVLDDF+CH+++ F   L   A T+V+ + GGL P+ QPLDR +NK+ KR +R  YT+
Sbjct:  303 GKEKERFTLCLAVSADGKKVPLRIIFKGTPFVPPATPGKGKATQPRKNSIAWEVLPANRSKHGLPVGGMSFGVQEKSWCDLRECKLWIKDSWKLRPNNGSIVR-QRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLIPLFQPLDRMLNKQMKRLLRGMYTA 468          
BLAST of mRNA_P-littoralis_Contig1025.17.1 vs. uniprot
Match: A0A6H5KT06_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT06_9PHAE)

HSP 1 Score: 142 bits (357), Expect = 9.560e-39
Identity = 74/164 (45.12%), Postives = 105/164 (64.02%), Query Frame = 1
Query:    1 GKEKLRYTVVLAVRGDGQKVRPRIIYKGNPFVGGT-NKSGSAKKPGKNSLSYEHLPDKRTSFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARY 486
            GKE+ R+ +VLAV  DG+KV PRI +KG PF   T +  G +  P KNS+++E  P  R   G+PA G+S GVQ+ SW D  + + W++  +  RP + S   QRP +LVLDDF+ H++E F   L   A T+V+ + GGLTP+ QPLD  +NK+ KR +R +Y
Sbjct:   30 GKEQERFALVLAVMADGKKVSPRITFKGTPFTPPTVSGKGKSTLPRKNSVAWEIHPANRAKHGHPANGVSFGVQEKSWSDQRECNGWISGRWKLRPNNGSIVQQRPCILVLDDFKRHKDEGFIAALKRDANTIVIFIPGGLTPLLQPLDCMLNKQMKRLLRGKY 193          
BLAST of mRNA_P-littoralis_Contig1025.17.1 vs. uniprot
Match: A0A6H5KRZ1_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRZ1_9PHAE)

HSP 1 Score: 147 bits (372), Expect = 1.150e-38
Identity = 78/162 (48.15%), Postives = 105/162 (64.81%), Query Frame = 1
Query:   16 RYTVVLAVRGDGQKVRPRIIYKGNPFVG-GTNKSGSAKKPGKNSLSYEHLPDKRTSFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRP--GSTSRDQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTS 492
            R+T+ LAV  DG+KV  RII+KG PFV   T   G A +P KNS+++E LP  R+  G P GG+S GVQ+ SWCD  +   W+   +  RP  GS  R QR  +LVLDDF+CH+++ F   L   A T+V+ + GGLTP+ QPLDR +NK+ KR +R  YT+
Sbjct:  274 RFTLCLAVSADGKKVPLRIIFKGTPFVPPATPGKGKATQPRKNSIAWEVLPANRSKHGLPVGGMSFGVQEKSWCDLRECKLWIKDSWKLRPNNGSIVR-QRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGMYTA 434          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1025.17.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXD3_ECTSI4.580e-4446.99DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JUK2_9PHAE5.500e-4246.39DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5L4U1_9PHAE1.150e-4145.78DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K6L9_9PHAE1.290e-4147.59DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KE45_9PHAE7.830e-4149.10DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JHT8_9PHAE1.050e-4046.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KII4_9PHAE2.170e-4046.39DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K8Y4_9PHAE2.020e-3948.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KT06_9PHAE9.560e-3945.12DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KRZ1_9PHAE1.150e-3848.15DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1025contigP-littoralis_Contig1025:55515..56008 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FXD3
Preferred namePOGK
PFAMsBrkDBD,DDE_1,HTH_Tnp_Tc5,KRAB
Model size495
Max annot lvl2759|Eukaryota
KEGG koko:K09228
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.52e-45
EggNOG OGsKOG3105@1|root,KOG3105@2759|Eukaryota
DescriptionDNA binding
Cds size492
COG categoryCH
BRITEko00000,ko03000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789363.5113883-CDS-P-littoralis_Contig1025:55516..560081680789363.5113883-CDS-P-littoralis_Contig1025:55516..56008Pylaiella littoralis U1_48CDSP-littoralis_Contig1025 55517..56008 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1025.17.1prot_P-littoralis_Contig1025.17.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1025 55517..56008 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1025.17.1

>prot_P-littoralis_Contig1025.17.1 ID=prot_P-littoralis_Contig1025.17.1|Name=mRNA_P-littoralis_Contig1025.17.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=164bp
GKEKLRYTVVLAVRGDGQKVRPRIIYKGNPFVGGTNKSGSAKKPGKNSLS
YEHLPDKRTSFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRPGSTSR
DQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNI
NKEFKRGVRARYTS
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mRNA from alignment at P-littoralis_Contig1025:55515..56008-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1025.17.1 ID=mRNA_P-littoralis_Contig1025.17.1|Name=mRNA_P-littoralis_Contig1025.17.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=494bp|location=Sequence derived from alignment at P-littoralis_Contig1025:55515..56008- (Pylaiella littoralis U1_48)
GGCAAGGAGAAGCTGCGGTACACCGTGGTGCTAGCTGTCCGGGGTGATGG ACAGAAGGTGCGGCCGCGCATCATCTACAAGGGGAACCCTTTTGTCGGGG GTACCAACAAGTCAGGCTCAGCCAAGAAGCCTGGCAAGAACAGCCTGTCG TACGAGCACCTCCCAGACAAGCGGACGAGCTTCGGCTACCCGGCTGGCGG CATCAGCCTCGGGGTGCAGAAGTCGTCGTGGTGCGACGGCACCCAGTCCG ACGAGTGGGTAACCCAGGACTTCATGCGCCGCCCAGGGTCTACCTCCAGA GATCAGCGTCCCAGCGTTCTCGTGCTCGACGACTTCAGGTGCCACCGGGA AGAGAGGTTCCAAAAGAAGCTAATGGACCTGGCCAAGACGCTGGTGGTGA TGCTTGGTGGAGGGCTGACCCCGGTGTGCCAGCCGCTCGACCGGAACATC AACAAGGAGTTCAAGCGAGGTGTTCGGGCCAGGTACACCAGCTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1025:55515..56008-

>mRNA_P-littoralis_Contig1025.17.1 ID=mRNA_P-littoralis_Contig1025.17.1|Name=mRNA_P-littoralis_Contig1025.17.1|organism=Pylaiella littoralis U1_48|type=CDS|length=492bp|location=Sequence derived from alignment at P-littoralis_Contig1025:55515..56008- (Pylaiella littoralis U1_48)
GGCAAGGAGAAGCTGCGGTACACCGTGGTGCTAGCTGTCCGGGGTGATGG
ACAGAAGGTGCGGCCGCGCATCATCTACAAGGGGAACCCTTTTGTCGGGG
GTACCAACAAGTCAGGCTCAGCCAAGAAGCCTGGCAAGAACAGCCTGTCG
TACGAGCACCTCCCAGACAAGCGGACGAGCTTCGGCTACCCGGCTGGCGG
CATCAGCCTCGGGGTGCAGAAGTCGTCGTGGTGCGACGGCACCCAGTCCG
ACGAGTGGGTAACCCAGGACTTCATGCGCCGCCCAGGGTCTACCTCCAGA
GATCAGCGTCCCAGCGTTCTCGTGCTCGACGACTTCAGGTGCCACCGGGA
AGAGAGGTTCCAAAAGAAGCTAATGGACCTGGCCAAGACGCTGGTGGTGA
TGCTTGGTGGAGGGCTGACCCCGGTGTGCCAGCCGCTCGACCGGAACATC
AACAAGGAGTTCAAGCGAGGTGTTCGGGCCAGGTACACCAGC
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