mRNA_P-littoralis_Contig1025.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1025.1.1
Unique NamemRNA_P-littoralis_Contig1025.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1025.1.1 vs. uniprot
Match: A0A6H5KKT3_9PHAE (U1-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKT3_9PHAE)

HSP 1 Score: 370 bits (949), Expect = 3.170e-122
Identity = 218/233 (93.56%), Postives = 228/233 (97.85%), Query Frame = 1 
Query:  313 MSKELGYKQVKNVESRRTWDRDYYEAKAKERIEKGDDYQEKDEAGGPSRRNHKEEFQPAAPGAAGPAGSARAYLKTREKKVDLSSKLGKTQVVTAASTPSQQGGWYCETCKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVTQVKDRLKMHKQREEDRISGALRKPSAEDEFDSRVRESEDNEXXXXXXXXXXXXXXXXXXXXXXXXMEFQDPDMAAMMGFGGFGGGGKK 1011
            MSK+LGYKQVKNVESRRTWDRDYYEAKAKERIE+GDDYQEKDE G P+RR+ KEEFQPAAPGAAGPAGSARAYLKTRE+KVDLSSKLGKTQVVTAASTPSQQGGWYCE CKCGLKDSINYLDHINGKKHQRELGYSMRVERSTV+QVKDRLKMHKQREEDRISGAL+KPSAEDEFD+RVRE+EDNEXXXXXXXXXXXXXXXXXXXXXXXXMEFQDP+MAAMMGFGGFGGG KK
Sbjct:    1 MSKDLGYKQVKNVESRRTWDRDYYEAKAKERIEQGDDYQEKDE-GAPARRSQKEEFQPAAPGAAGPAGSARAYLKTRERKVDLSSKLGKTQVVTAASTPSQQGGWYCEICKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVSQVKDRLKMHKQREEDRISGALKKPSAEDEFDTRVREAEDNEXXXXXXXXXXXXXXXXXXXXXXXXMEFQDPEMAAMMGFGGFGGGSKK 232
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BLAST of mRNA_P-littoralis_Contig1025.1.1 vs. uniprot
Match: A0A835ZCC8_9STRA (U1-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCC8_9STRA)

HSP 1 Score: 183 bits (465), Expect = 2.570e-50
Identity = 144/231 (62.34%), Postives = 168/231 (72.73%), Query Frame = 1 
Query:  316 SKELGYKQVKNVESRRTWDRDYYEAKAKERIEKGDDYQEKDEAGGPSRRNHKEEFQPAAPGAAGPAGSARAYLKTREKKVDLSSKLGKTQVVTAASTPSQQGGWYCETCKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVTQVKDRLKMHKQREED--RISGALRKPSAEDEFDSRVRESEDNEXXXXXXXXXXXXXXXXXXXXXXXXMEFQDPDMAAMMGFGGFGGG 1002
            S +LG KQV NV  RR+WD + YE KAKER+E+GD+ +E   A   +  N KEEFQPA  GA GPAGS RAYLK R +KVDL S+L KTQV+T+A+  S QGG++CE CKC LKDSI YLDHINGKKHQR LG+SMRVERS+V  VK++L   + R ED  + SGA RK SA  E++ R+ E     XXXXXXXXXXXXXXXXXXXXXXXX        AAMMGFGGF GG
Sbjct:    7 SDDLGDKQVSNV-VRRSWDVELYEKKAKERLERGDEVEEARPASSKAALN-KEEFQPAPDGAQGPAGSRRAYLKARTEKVDLESRLHKTQVITSAAASSSQGGYWCEVCKCLLKDSIAYLDHINGKKHQRALGFSMRVERSSVGSVKEKLDKLRARAEDAAKASGAPRK-SAVQEYEERLAEYAAX-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAMMGFGGFSGG 233
[Close]
BLAST of mRNA_P-littoralis_Contig1025.1.1 vs. uniprot
Match: A0A7S2WR40_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WR40_9STRA)

HSP 1 Score: 164 bits (415), Expect = 2.990e-43
Identity = 127/230 (55.22%), Postives = 160/230 (69.57%), Query Frame = 1 
Query:  334 KQVKNV--ESRRTWDRDYYEAKAKERIEKGDD-YQEKDEAGGPSRRNHKEEFQPAAPGAAGPAGSARAYLKTREKKVDLSSKLGKTQVVTAASTPSQQGGWYCETCKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVTQVKDRLKMHKQREEDRISGALRKPSAEDEFDSRVRESEDNEXXXXXXXXXXXXXXXXXXXXXXXXMEFQDPDMAAMMGFGGFGGGGKKK 1014
            ++ KNV    RRTWD   YE KA+ER+ + +    E D    P R   ++EF+ A   AAGPAGSARA+L  R + + L    GKTQ++       + GGWYC+ C+C LKDS NYLDHINGKKHQR+LG+SMRVERSTV QV +R K+ K+R+ED +S A R P+A + ++ R+  +++ EXXXXXXXXXXXXXXXXXXXXXX  ME  DPD+ A MGFGGFGGG K K
Sbjct:    3 EEKKNVGGAQRRTWDVKEYEKKAQERLAREEGGIVEGDVDDRPVR--DRDEFRRAEDQAAGPAGSARAFLNNRNRALGLEKAAGKTQIIADNGLRQKGGGWYCDVCECLLKDSSNYLDHINGKKHQRKLGFSMRVERSTVGQVSERFKLAKKRKEDEMSVATR-PTAIEAYEQRIAAAQEEEXXXXXXXXXXXXXXXXXXXXXX--MEGMDPDLMAAMGFGGFGGGAKGK 227
[Close]
BLAST of mRNA_P-littoralis_Contig1025.1.1 vs. uniprot
Match: W7U2Z2_9STRA (Zinc finger matrin-type protein 2 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U2Z2_9STRA)

HSP 1 Score: 154 bits (390), Expect = 1.250e-39
Identity = 103/223 (46.19%), Postives = 134/223 (60.09%), Query Frame = 1 
Query:  346 NVESRRTWDRDYYEAKAKERIEK---GDDYQEKDEAGGPSRRNHKEEFQPAAPGAAGPAGSARAYLKTREKKVDLSSKLGKTQVVTAASTPSQQGGWYCETCKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVTQVKDRLKMHKQREEDRISGALRKPSAEDEFDSRVRESEDNEXXXXXXXXXXXXXXXXXXXXXXXXMEFQ----DPDMAAMMGFGGF 993
            NVE RRTWD +++E  AKER+EK   GD  ++K     P     +EEFQ A  GAAGP GS RAYLK RE  + L  K+GK QVVT +S P QQGG++C+ C+C LKDS+ YLDHINGKKHQ+ LGYSMRVER  V +VK+RL   K+RE+++     R+ SA D +  ++ + E  +                           +    DP+MAA+MGFGGF
Sbjct:   17 NVE-RRTWDLEHFEKIAKERLEKEASGDVEKKK-----PGFVRKREEFQAAEAGAAGPEGSKRAYLKHREADLGLEEKVGKIQVVTGSSAPHQQGGYWCDICQCLLKDSMAYLDHINGKKHQKALGYSMRVERVGVDRVKERLNALKRREDEKKKAGPRE-SAIDAYQKKLEKDEAIKAQWKEARKEARINVIQRATKEEESTVEEEGGVDPEMAALMGFGGF 232
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BLAST of mRNA_P-littoralis_Contig1025.1.1 vs. uniprot
Match: A0A1Z5KJY6_FISSO (U4/U6.U5 tri-snRNP component SNU23 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KJY6_FISSO)

HSP 1 Score: 150 bits (380), Expect = 8.550e-38
Identity = 125/261 (47.89%), Postives = 158/261 (60.54%), Query Frame = 1 
Query:  310 SMSKELGYKQVKNVESRRTWDRDYYEAKAKERIEKGDD--YQEKDEAGGPSRR---------NHKEEFQPAAPGAAGPAGSARAYLKTREKKVDLSSKLGKTQVVTAASTPSQQG-GWYCETCKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVTQVKDRLKM-------HKQREEDRISGALRKPSAEDEFDSRVRESED---------NEXXXXXXXXXXXXXXXXXXXXXXXXMEFQDPDMAAMMGFGGFGGGGK 1008
            +M+  L YKQV NV SRR WD + YE +AKER  + ++  Y E+    G             ++KEEFQ A P AAGP GS RA+L+ R++ +DL SK+G +++V+A +   + G GW+C+ C C LKDS+ YLDHINGKKHQR+LG++MRVERST  QV DRLK         K+   D I        ++DE   R RE +              XXXXXXXXXXXXXXXXXX     E  DP+MAAMMGF GFGGG K
Sbjct:    8 TMASNLNYKQVANV-SRRKWDVESYEQRAKERQAREEEAGYLEETRKKGTDNSTANAKNEDDSNKEEFQAAPPDAAGPEGSKRAFLRARQQAIDLESKVGTSEMVSADNAVVKSGIGWHCKVCDCFLKDSLTYLDHINGKKHQRKLGFTMRVERSTKDQVLDRLKSISQTSKSQKETSLDDIVDLNELVQSKDEALQREREEKXXXXXXXXAMENMRXXXXXXXXXXXXXXXXXXEEVDFEGIDPEMAAMMGFSGFGGGNK 267
[Close]
BLAST of mRNA_P-littoralis_Contig1025.1.1 vs. uniprot
Match: A0A8J5JCN4_9STRA (zf-C2H2_jaz domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5JCN4_9STRA)

HSP 1 Score: 142 bits (359), Expect = 2.250e-35
Identity = 108/227 (47.58%), Postives = 138/227 (60.79%), Query Frame = 1 
Query:  340 VKNVESRRTWDRDYYEAKAKERIEKGDDYQEKDEAGGPSRRNHKEEFQPAAPGAAGPAGSARAYLKTREKKVDLSSKLGKTQVVTAASTPSQQGGWYCETCKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVTQVKDRLKMHKQREEDRISGALRKPSAEDEFDSRVRESEDNEXXXXXXXXXXXXXXXXXXXXXXXXMEFQDPD----MAAMMGFGGFGGGGK 1008
            V NV +R+TWDR +YE  A+ R E   + +E  +A     ++ KEEFQ A  GAAGPAGSARA+LK R  K+ L + +G  +VV +    S+ GG+YCE C+CGLKDS+ YLDHINGKKH R+LGYSMRVERSTV QVK+RL+ ++           +K  A +E ++RV+      XXXXXXXX                   + PD    M AMMGFGGFGG  K
Sbjct:   16 VANV-ARQTWDRAHYEKLAQLRAEGQLEKEETKKA----IKSSKEEFQSANEGAAGPAGSARAFLKARTAKMSLETSVGTVKVVKSEDL-SKNGGYYCEVCECGLKDSVAYLDHINGKKHLRKLGYSMRVERSTVDQVKNRLQNYE-----------KKLKAAEEEEARVKXXXXXXXXXXXXXXDTLDQDKNDDADKKPEAADEVPDADAEMMAMMGFGGFGGSKK 225
[Close]
BLAST of mRNA_P-littoralis_Contig1025.1.1 vs. uniprot
Match: W2PLF3_PHYPN (U1-type domain-containing protein n=11 Tax=Phytophthora TaxID=4783 RepID=W2PLF3_PHYPN)

HSP 1 Score: 143 bits (360), Expect = 2.600e-35
Identity = 118/237 (49.79%), Postives = 153/237 (64.56%), Query Frame = 1 
Query:  340 VKNVESRRTWDRDYYEAKAKERIEKGDDYQEKDEAGGPSRRNHKEEFQPAAPGAAGPAGSARAYLKTREKKVDLSSKLGKTQVVTAASTPSQQGGWYCETCKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVTQVKDRLKMHKQREEDRISGALRKPSAEDEFDSRVRESEDNEXXXXXXXXXXXXXXXXXXXXXXXXMEFQ--------------DPDMAAMMGFGGFGGGGK 1008
            V NV +R+TWDR +YE  A+ R E   + +E  +      ++ KEEFQ A  GAAGPAGSARA+LK R  K+ L S +G  +VV +    S+ GG+YCE C+CGLKDS+ YLDHINGKKH R+LGYSMRVERSTV QVK+RL+   +R+ D +    +K  A ++++ +++ +E+  XXXXXXXXXXXXXXXXXXX                       D +M AMMGFGGFGG  K
Sbjct:   13 VANV-TRQTWDRAHYEKLAQLRAEGKLEKEETKKV----IKSTKEEFQAANEGAAGPAGSARAFLKARTNKMSLESSVGTVKVVKSDDV-SKNGGYYCEVCECGLKDSVAYLDHINGKKHLRKLGYSMRVERSTVDQVKNRLQSASKRKWDPLMA--KKLDAMEDYEKKLKAAEEEXXXXXXXXXXXXXXXXXXXXALEQDKSDDADKKPEAADEALDADAEMMAMMGFGGFGGSKK 241
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BLAST of mRNA_P-littoralis_Contig1025.1.1 vs. uniprot
Match: A0A3R7GK79_9STRA (U1-type domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7GK79_9STRA)

HSP 1 Score: 143 bits (360), Expect = 2.740e-35
Identity = 107/239 (44.77%), Postives = 142/239 (59.41%), Query Frame = 1 
Query:  340 VKNVESRRTWDRDYYEAKAKERIEKGDDYQEKDEAGGPSRRNHKEEFQPAAPGAAGPAGSARAYLKTREKKVDLSSKLGKTQVVTAASTPSQQGGWYCETCKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVTQVKDRLKMHKQREEDRISGALRKPSAEDEFDSRVRESEDNEXXXXXXXXXXXXXXXXXXXXXXXXMEFQ----------------DPDMAAMMGFGGFGGGGK 1008
            V NV +R+TWDR++YE  AK R E   + +E  +      ++ KEEFQ A   AAGPAGSARA+LK R  K+ L + +G  +VV +    S+ GG+YCE C+CGLKDS+ YLDHINGKKH R+LGYSMRVERSTV QVK RL+   +R+ D +    +K     +++ +V+E+E+ E       XXXXXXXX            +                D +M +MMGFGGFGG  K
Sbjct:   13 VANV-ARQTWDREHYEKLAKLRAEGQLEQEETKKV----IKSSKEEFQAADDRAAGPAGSARAFLKARTSKMSLENSVGTVKVVKSDDL-SKNGGYYCEVCECGLKDSVAYLDHINGKKHLRKLGYSMRVERSTVDQVKSRLQSASKRKWDPLM--TKKLDTMADYEKKVKEAEEEEARIKRQKXXXXXXXXLGDQQTSEVKSEKATDKKPEAEDEAVPDADTEMMSMMGFGGFGGSKK 243
[Close]
BLAST of mRNA_P-littoralis_Contig1025.1.1 vs. uniprot
Match: UPI00145566CC (zinc finger matrin-type protein 2-like n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI00145566CC)

HSP 1 Score: 140 bits (353), Expect = 8.570e-35
Identity = 109/218 (50.00%), Postives = 133/218 (61.01%), Query Frame = 1 
Query:  358 RRTWDRDYYEAKAKERIEKGDDYQEKDEAGGPSRRNHKEEFQPAAPGAAGPAGSARAYLKTREKKVDLSSKLGKTQVVTAASTPSQQGGWYCETCKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVTQVKDRLKMHKQREEDRISGALRKPSAEDEFDSRVRESEDNEXXXXXXXXXXXXXXXXXXXXXXXXMEFQDPDMAAMMGFGGFGGGGKK 1011
            RR WDRD +E  AKER++K DD          S  N ++  +P            R  LK RE KVDL S+LGK+QV+T  +  SQ GG+YC  C C +KDSIN+LDHINGKKHQR LG SM+VERST+ QVK R +++K++ E+              F+SR++E     XXXXXXXXXXXXXXXXX           DPDMAAMMGF GFGG  KK
Sbjct:   14 RRKWDRDEFEKIAKERLDKEDD---------DSTENERKRNEPPI---------RRELLKQREYKVDLESRLGKSQVITKTTPSSQMGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMKVERSTLDQVKKRFELNKRKREEXXXXXX--------FESRMQELRXXXXXXXXXXXXXXXXXXXXADDDDLDSGV-DPDMAAMMGFSGFGGAKKK 204
[Close]
BLAST of mRNA_P-littoralis_Contig1025.1.1 vs. uniprot
Match: A0A4D9DA28_9STRA (U1-type domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DA28_9STRA)

HSP 1 Score: 150 bits (378), Expect = 1.390e-34
Identity = 92/175 (52.57%), Postives = 119/175 (68.00%), Query Frame = 1 
Query:  346 NVESRRTWDRDYYEAKAKERIEK---GDDYQEKDEAGGPSRRNHKEEFQPAAPGAAGPAGSARAYLKTREKKVDLSSKLGKTQVVTAASTPSQQGGWYCETCKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVTQVKDRLKMHKQREEDRISGALRKPSAEDEFDSRVRESE 861
            NVE RRTWD +++E  AKER+EK   GD  ++K     P     +EEFQ A  GAAGP GS RAYLK RE  + L  K+GK QVVT +S P QQGG++C+ C+C LKDS+ YLDHINGKKHQ+ LGYSMRVER  V +VK+RL   K+RE+++     R+ SA D ++ ++   E
Sbjct:   17 NVE-RRTWDLEHFEKIAKERLEKEASGDVEKKK-----PGFVRKREEFQAAETGAAGPEGSKRAYLKHREADLGLEEKVGKIQVVTGSSAPHQQGGYWCDICQCLLKDSMAYLDHINGKKHQKALGYSMRVERVGVDRVKERLNALKRREDEKRKAGPRE-SAIDAYEKKLENDE 184
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1025.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KKT3_9PHAE3.170e-12293.56U1-type domain-containing protein n=2 Tax=Ectocarp... [more]
A0A835ZCC8_9STRA2.570e-5062.34U1-type domain-containing protein n=1 Tax=Tribonem... [more]
A0A7S2WR40_9STRA2.990e-4355.22Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
W7U2Z2_9STRA1.250e-3946.19Zinc finger matrin-type protein 2 n=1 Tax=Nannochl... [more]
A0A1Z5KJY6_FISSO8.550e-3847.89U4/U6.U5 tri-snRNP component SNU23 n=2 Tax=Fistuli... [more]
A0A8J5JCN4_9STRA2.250e-3547.58zf-C2H2_jaz domain-containing protein n=1 Tax=Phyt... [more]
W2PLF3_PHYPN2.600e-3549.79U1-type domain-containing protein n=11 Tax=Phytoph... [more]
A0A3R7GK79_9STRA2.740e-3544.77U1-type domain-containing protein n=3 Tax=Phytopht... [more]
UPI00145566CC8.570e-3550.00zinc finger matrin-type protein 2-like n=1 Tax=Ast... [more]
A0A4D9DA28_9STRA1.390e-3452.57U1-type domain-containing protein n=1 Tax=Nannochl... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1025contigP-littoralis_Contig1025:362..6099 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LQ99
Preferred nameSNU23
PFAMszf-C2H2_jaz,zf-met
Model size1838
Max annot lvl2759|Eukaryota
KEGG koko:K12848
KEGG Pathwayko03040,map03040
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0030532,GO:0032991,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0046540,GO:0071704,GO:0090304,GO:0097159,GO:0097525,GO:0097526,GO:0120114,GO:1901360,GO:1901363,GO:1990904
Exons4
Evalue1.14e-127
EggNOG OGsKOG4727@1|root,KOG4727@2759|Eukaryota
Ec32 ortholog descriptionConserved C2H2 zinc finger protein
Ec32 orthologEc-26_005600.1
DescriptionmRNA splicing, via spliceosome
Cds size705
COG categoryA
BRITEko00000,ko00001,ko03041
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1025.1.1prot_P-littoralis_Contig1025.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1025 1183..5787 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789363.019702-UTR-P-littoralis_Contig1025:361..11821680789363.019702-UTR-P-littoralis_Contig1025:361..1182Pylaiella littoralis U1_48UTRP-littoralis_Contig1025 362..1182 -
1680789363.0713725-UTR-P-littoralis_Contig1025:5787..60991680789363.0713725-UTR-P-littoralis_Contig1025:5787..6099Pylaiella littoralis U1_48UTRP-littoralis_Contig1025 5788..6099 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789363.032185-CDS-P-littoralis_Contig1025:1182..13381680789363.032185-CDS-P-littoralis_Contig1025:1182..1338Pylaiella littoralis U1_48CDSP-littoralis_Contig1025 1183..1338 -
1680789363.0420227-CDS-P-littoralis_Contig1025:2150..22611680789363.0420227-CDS-P-littoralis_Contig1025:2150..2261Pylaiella littoralis U1_48CDSP-littoralis_Contig1025 2151..2261 -
1680789363.052622-CDS-P-littoralis_Contig1025:3198..34111680789363.052622-CDS-P-littoralis_Contig1025:3198..3411Pylaiella littoralis U1_48CDSP-littoralis_Contig1025 3199..3411 -
1680789363.0610814-CDS-P-littoralis_Contig1025:5562..57871680789363.0610814-CDS-P-littoralis_Contig1025:5562..5787Pylaiella littoralis U1_48CDSP-littoralis_Contig1025 5563..5787 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1025.1.1

>prot_P-littoralis_Contig1025.1.1 ID=prot_P-littoralis_Contig1025.1.1|Name=mRNA_P-littoralis_Contig1025.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=235bp
MSKELGYKQVKNVESRRTWDRDYYEAKAKERIEKGDDYQEKDEAGGPSRR
NHKEEFQPAAPGAAGPAGSARAYLKTREKKVDLSSKLGKTQVVTAASTPS
QQGGWYCETCKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVTQVKDR
LKMHKQREEDRISGALRKPSAEDEFDSRVRESEDNEERRKRQKKEAKRLA
KKKQQEEEEEMEFQDPDMAAMMGFGGFGGGGKKK*
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mRNA from alignment at P-littoralis_Contig1025:362..6099-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1025.1.1 ID=mRNA_P-littoralis_Contig1025.1.1|Name=mRNA_P-littoralis_Contig1025.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5738bp|location=Sequence derived from alignment at P-littoralis_Contig1025:362..6099- (Pylaiella littoralis U1_48)
GAGAGGTAGGACAGCGGTATCAGTAGAAGTAGCGCCACGAAGACAGTGAG
AGAGATACTGGACAAGAAGAGATTGCCCCTGATTTGTTCGTTCGTGATAG
ACAGAAGTTATTGTATTCGGTAATTGAACGGCAGACGAAGAGCGAGACAA
TTGTACGCTCGTCCAAACTCTGTTGCAGTCCGGACTACGATATCATACGA
CGACGGGAGGATACGGCCCTACCCAGGTGCACAAGCTGCCGGCTTGCGGA
GACAGAGGCAACGGAGGGGGGGAACGGGCTACCTCTGACCCTGATACATT
CGATATTGAAGCATGTCGAAAGAGCTGGGCTACAAGCAAGTGAAAAACGT
TGAGTCGAGGCGGACATGGGACCGTGACTACTATGAGGCCAAGGCGAAGG
AGAGGATCGAAAAGGGCGATGACTACCAGGAGAAGGATGAAGCAGGCGGA
CCCTCAAGGAGAAACCACAAAGAGGAGTTTCAGCCCGCTGCCCCGGGAGC
TGCCGGCCCGGCGGGGTCTGCGCGCGCCTACCTCAAGGTATTCTGCACCA
CAGAGTTGCATCGCAGCACTTAATATTGATACGAATACAGCAGGATGAGA
GGTAGTCCAGCCAGCTGTATCCTATTTATCAATCGTATCATACGGCCTTT
GTTGAGGTTTCGCAGAAAACCTACGAGTACTGATGCACGGCGCACGCCCG
TGTACCCTCGAGTATTTTGGATTTTGGGTTTTTTAGGAGTTGTGACCTGA
AGCAGGTTAACCCCGTATCTGCACCTGCCAGGTACATTTCCATTTGTAAC
CGTGCACTCCTTGACCTGCGATTTTTTAAATCTTTGACCGAGGCTCTACT
TCAATTTTACACCTCTCCCGACCCAACCCAACCCAACCCCAACCCTAACT
AACTAACTCTAACCTAACCCTAACCCTAACCCAGTCCGCAAGGAGCCACG
GCGCCGCCCCGCGGCGCGTTTGGTTGAAAGAACACTCCTTGGTTGGAAAA
ATACACGCGGCGTATAACTGACCCCCGACAGGTGCACGATTACAAACGTA
CCTGGCAGGTGCAGATAGGGGTTACCCTCAAGCAGCAGGAGGCCGAAAGA
GCACCCAGCAATCACACAGGAGATTGATCATCTCAGTGGGAAAGCTTTGG
ACATGAAAAAGTCCGGTTGGTCTCACGCAGAGGCACGGTGCATACAAGTA
GTGCATGTAGTGCATTCTCTTCACAGCGGTCGTGTTAGCACGTCTACCTC
CACAATTTTTACCCAAACTCTCAGATCAAGATAAAATTTCCGTAAGTCTC
AAATCAAGTCAACACAGCGTATTTGGGAAAGGCCTCAAGTTCTGTTGTGC
AAAGACTTCCGACCTTAGTCCTGATACTAGAAGAGGACACTATGTAGCGG
CCACATGTGTGTCGGCACGTTCAGATCTGCTTCTCGTGCGAAGATATCGA
TTGTCAAACTCGTAGCAGTGGATCAAAATGTTCGCAAACTGGACCCAAAC
CAAAGGCATTTCGCTATTCATTTATTTTGTACTCGCCGCCACAGACCTCA
ACCTTGAATTGCGGGTCTACAGCGTGCAGCTGGTCCCACTACATTGCAGC
AACCTTGGGGTTGGCTTCAGAACGTAGTAACCTCGGATGACCCGCAGTTC
TCAGGCTTAGGTCTGTGGTAGCGAGCACAGCAGGAGTAACAAGCCTTTGG
TTTCGGACCAATTGGCGGACTTTTCGACCGACTGCGTCAGCCTTCGATAT
CTCTGCACCAGTAGCATATCTGAAGGTGCCGACACACACAACTGCAACAC
GGTATCCTCTACTGATATAAACACCAAGGTTAGAACTCCTTGCGCAACAG
ATGATATTTGAGCCTCATCCAAAAATGCTATTTTGGCTTCACTAACTTTT
TTTGTGAGATGATGGACAAAGCTTTTTGAGAAAGGGGGGGTATTCTGCGT
ACCCTTCAAGTGTGCGTTGAAGCAGTATGGTTGGGAATTCAGTACGGGTG
CAACAGCCACTGAGAGGTACAACAGCATGTCTACAGCCGACTAGTACACG
TTCTTGATTACTTCGCGTAGGTTTCCGTGCGGCGCTGCAGTGGTATTCGG
CACGGGATTGATTCTCTGTTCGAATTTCGAACGTTTCTACCGCTGGTAGT
GCACTGCTGTGCGCCGTTGAGCTCATGTTTGATGCCGGTACTCATGTAAG
AGTATCGTGGCCCGATCGTGCTTGATCCGTGATGCTCCACAGCCAGTTTG
CGGTCTCGCCGCGTCTCGATTCATATTCCACCGCACCGCCATATCGAACG
ACAGCAGTGTTTGCATCCTAACCCGTCAGAGCACTACAGCCCCTGGATCT
CTCTCTGTTGTTCACAACTAGTGCGATAGTCACAATTTTTATTGAAGCAA
CGAAACACTTGAGCTGTTGTTCAGCCTCTTACCACCTGCGTCGCATCTCT
CCGTTCGTCACACGAACAGGTCCCTCAACAGCAGTATGTCACAAAGGACC
TGCGTTCTGAATCCCAAGCTGGGCAAGGGCTGCACCACAAAAACTCATGT
GACATGCACGAACTTTGTTGAAAGGTCGACGCATTTGCTTGACGCACCAA
ACAGGAGTAGACTCATTGCTTCCCTGGTGTCCGTCTTTTTTGTCCTGTGA
TTCGTCGATGTCCCACGAATTCAAAAACAAAACAAAAGACCCGAGAGAAG
AAAGTAGATCTGTCGTCGAAGCTGGGCAAGACGCAGGTGGTCACCGCGGC
GTCGACGCCCTCGCAGCAGGGAGGCTGGTACTGCGAAACGTGCAAGTGCG
GACTCAAGGACAGCATCAACTACCTGGACCACATCAACGGCAAGAAGCAC
CAGAGGGAGCTGGGCTACAGCATGCGCGTAGAGAGGTCGACCGTAACGCA
GGTGGGGTAACTGTGGTCTGCGTTGCTGAAGGCACAGCTGATGATGTACG
ACATAGTGCTAAGTGTTTCCCTTGAGGTTTGTTCTTACGCTGCACATTTT
CCGAAGAAAAGGGGCCCACATCTCCGTTGCTTTGGGGGGTGTCTGTGTGC
TTCGGCATGCATAAAAACGGTACGCGTTGAGAGGCCCCTTTTGATGCAGA
GATCCGGGTATCATGATGTGCTTGTGAAATTACCTATCGTTGTATACTAC
TGGTGTAGATCTGGTGGATGGTAACTTCCACTTTTTGTCTCGATGACGAG
GAGGGTGCGCTGTCGGGGAGGATGCCCTTGGTAAGATCTCGCGAAGACCT
CTCCGAAATCGATCGTTCAACTTTGGCATGTCACCATCCCAGTCGTGAAG
ATATCGGGCGCGGAAAAAAATTGCGTACGGAAAAAATCTGCGCACCCCGG
CGCGTTCGCTTCCGCGCACTTGAAGCCGTAAGTAGTACTTCGAAGTAGTA
CTTATCTTGCTATTACAAACAGTAATACTACCATCACTAACAGTCAAGTC
GTAGCAGTAGTGACAGCAATAACAGTAGCAGTAGCAATAGCAAAAGCAAA
AGCAACAACAACAGCAACAGTACTAAATAGACTATATGATAATAGCCCAA
GTAATAAACTTGTTCATCGTTGTTGAGCCTAAAGTAATTCGGCGATCGGT
TTCATATCGTAACCGGGTGAGGTAACCCGACTGCAGAAAATCATGCGCAT
CAAATATTTTTGTCGCTTCGGCCCGGACTTGAATATCTCCTCAAGAATCT
CGTGATACGCCTATTCATGTACAATACGATATATCACTCGTATGAAGTTT
TACGGGTCATGTGTATTTTTCCTCACTGGTACGTATCCTCCACGCTATTT
TGTGCGTGCGTCCAACACTTTTTTTAATGACACGACAGGTGAAGGACCGG
CTCAAGATGCACAAGCAACGGGAAGAGGACCGCATCTCGGGGGCGCTGAG
GAAGCCATCCGCAGAGGACGAGTTCGATTCTAGAGTACGGGAGTCAGAGG
TGAGACCGAAAGTCACGAGCAACAGCATTGGCCGTATCGCGCATACCCCC
GGTGGCAACTGGTTGTTTTCCGTCTGTTTCTATCGGAAAAGCCTGGTCAC
GGGCGGACATCCCGTCATGGGCCCATGTCGCGATATCAGTCATATTTTTG
CAGGGATTCGGCGAGTATTGCCCGCTGTCACCAGATCGACCAAATCTTTG
TTCGCGGGCTAAAGTTTACATTGATGTTTCTTGGTGTGGCGTTCCGCGGC
GAACAACGCATGCAAACCGTCGCATGCCAACCACGCGCGCGCGTGCAGTG
GTGTGGTGTGGGGTGGGGTGATGTGATGTGGCACAGAGGGTACTGTTGTG
TTTGCGCACGGAAACTTGAAGTGCCCTGTACCTGCTAGGCCCAAGACAGA
GCTAAACCCGGGATGCGCCTTGTGAACTACTTCGTAGCATATTCTCACTG
ACGTTCAATAACCCATGCCAACCCGGCGAGGTTACGCAAACGAGTGCGCG
CGTAGGCCATTGGCAATCTGAACCACCAGCCACACTCCATAGAATTCTGT
GGGTTGCACTCGGCATGCTGAATTAGAAAAAATTTCACAACGTTTGCGGT
CGAGCACCGCACTTCAAAAGCTGCTCCTCCTTTACTGACACCAATCCCTC
CATCTACCTTTTGCATCTCAACCGACACACAGTCATACCGACTTCACATG
TCTCTACTAGATGGAGTGAAAAGGAGATGCGAAGACATTTCCATGAAAAT
ATAAACCCCTCCCCCCATGCCTACCACATCCCACACATGCTGCTTCCCGT
CCTTGACAAAGGATAACGAAGAGCGACGAAAGCGGCAGAAAAAGGAGGCG
AAACGGCTTGCGAAGAAGAAGCAACAGGAAGAGGAGGAAGAGATGGAGTT
CCAGGATCCTGATATGGCGGCAATGATGGGATTTGGCGGTTTTGGGGGAG
GGGGCAAAAAAAAGTAGATGCGCCATTCGAAGCCAAAAGTTGTCGTAATG
TTGAAATGATACCAATTTCACAAACCATCGCGTTTCCTTCGTACCGGAAG
ATCGTGCTTACAGCTGAGGAAAGGAAATTTTGAAGTTTTAAAGTACATCT
TTATCAGTTTTCAGAACCGGAAATGATAGTTTTGTAGGGACGATCCACCA
TAAAACACTTGCATTTTCACCTGCGAAAGCCGGGAAAGGGGCGAGGAGAC
GCACAGCAACGTCAAATTTATCCAGCATGCACACTGCTGGGTCGGAGTTT
GCACCTCGCATCGCCCCGAAATGTTGATGACCGTGTTTTGTTTTTTTTGC
GATCGGCGAATAGATGTTGCGGTTTGAACGTTTCCAGGAATGTCAACGAG
CTGTCGTTTTCTTCCCTCCAATCCTCTCAACCCGACCTTGCGCCTTTCTT
TGGGATGGATCGGGTTCAACTTTTTGTTCTTGCAAGAAGACTAAAAGCAG
ACCCGCGGTGGAGGAAAGGCCGCGGCTTTTCTGTATGTATCATATAATGT
GGTGTGAACGCGTTCTTGTTTTCGAGGGATCAGCTATTTCTTGTCACCGG
CAGTTTTATTTACTAGTTCGGGCACACTTGTACTGAACGTGTTACGACGA
ATGAATGTCGTGAAAGGTTTAGTTCCGTAGTGAGTTGATGCCATACAACA
CAATATGGGGGCTGAGTGTCATACCCTATTTTGCTGCTGTGGAAGCTACT
GCGTCACGCATCCTGCCCCGACCGCTTCTCTAACCCCAACGGCCACCCCG
CCTCGCTGACTTTGTGGTGCGACACCTGCCAATTACAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1025:362..6099-

>mRNA_P-littoralis_Contig1025.1.1 ID=mRNA_P-littoralis_Contig1025.1.1|Name=mRNA_P-littoralis_Contig1025.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=705bp|location=Sequence derived from alignment at P-littoralis_Contig1025:362..6099- (Pylaiella littoralis U1_48)
ATGTCGAAAGAGCTGGGCTACAAGCAAGTGAAAAACGTTGAGTCGAGGCG
GACATGGGACCGTGACTACTATGAGGCCAAGGCGAAGGAGAGGATCGAAA
AGGGCGATGACTACCAGGAGAAGGATGAAGCAGGCGGACCCTCAAGGAGA
AACCACAAAGAGGAGTTTCAGCCCGCTGCCCCGGGAGCTGCCGGCCCGGC
GGGGTCTGCGCGCGCCTACCTCAAGACCCGAGAGAAGAAAGTAGATCTGT
CGTCGAAGCTGGGCAAGACGCAGGTGGTCACCGCGGCGTCGACGCCCTCG
CAGCAGGGAGGCTGGTACTGCGAAACGTGCAAGTGCGGACTCAAGGACAG
CATCAACTACCTGGACCACATCAACGGCAAGAAGCACCAGAGGGAGCTGG
GCTACAGCATGCGCGTAGAGAGGTCGACCGTAACGCAGGTGAAGGACCGG
CTCAAGATGCACAAGCAACGGGAAGAGGACCGCATCTCGGGGGCGCTGAG
GAAGCCATCCGCAGAGGACGAGTTCGATTCTAGAGTACGGGAGTCAGAGG
ATAACGAAGAGCGACGAAAGCGGCAGAAAAAGGAGGCGAAACGGCTTGCG
AAGAAGAAGCAACAGGAAGAGGAGGAAGAGATGGAGTTCCAGGATCCTGA
TATGGCGGCAATGATGGGATTTGGCGGTTTTGGGGGAGGGGGCAAAAAAA
AGTAG
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