prot_P-littoralis_Contig1025.1.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig1025.1.1
Unique Nameprot_P-littoralis_Contig1025.1.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length235
Homology
BLAST of mRNA_P-littoralis_Contig1025.1.1 vs. uniprot
Match: A0A6H5KKT3_9PHAE (U1-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKT3_9PHAE)

HSP 1 Score: 367 bits (942), Expect = 6.980e-127
Identity = 218/233 (93.56%), Postives = 228/233 (97.85%), Query Frame = 0
Query:    1 MSKELGYKQVKNVESRRTWDRDYYEAKAKERIEKGDDYQEKDEAGGPSRRNHKEEFQPAAPGAAGPAGSARAYLKTREKKVDLSSKLGKTQVVTAASTPSQQGGWYCETCKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVTQVKDRLKMHKQREEDRISGALRKPSAEDEFDSRVRESEDNEXXXXXXXXXXXXXXXXXXXXXXXXMEFQDPDMAAMMGFGGFGGGGKK 233
            MSK+LGYKQVKNVESRRTWDRDYYEAKAKERIE+GDDYQEKDE G P+RR+ KEEFQPAAPGAAGPAGSARAYLKTRE+KVDLSSKLGKTQVVTAASTPSQQGGWYCE CKCGLKDSINYLDHINGKKHQRELGYSMRVERSTV+QVKDRLKMHKQREEDRISGAL+KPSAEDEFD+RVRE+EDNEXXXXXXXXXXXXXXXXXXXXXXXXMEFQDP+MAAMMGFGGFGGG KK
Sbjct:    1 MSKDLGYKQVKNVESRRTWDRDYYEAKAKERIEQGDDYQEKDE-GAPARRSQKEEFQPAAPGAAGPAGSARAYLKTRERKVDLSSKLGKTQVVTAASTPSQQGGWYCEICKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVSQVKDRLKMHKQREEDRISGALKKPSAEDEFDTRVREAEDNEXXXXXXXXXXXXXXXXXXXXXXXXMEFQDPEMAAMMGFGGFGGGSKK 232          
BLAST of mRNA_P-littoralis_Contig1025.1.1 vs. uniprot
Match: A0A835ZCC8_9STRA (U1-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCC8_9STRA)

HSP 1 Score: 181 bits (460), Expect = 1.150e-53
Identity = 144/231 (62.34%), Postives = 168/231 (72.73%), Query Frame = 0
Query:    2 SKELGYKQVKNVESRRTWDRDYYEAKAKERIEKGDDYQEKDEAGGPSRRNHKEEFQPAAPGAAGPAGSARAYLKTREKKVDLSSKLGKTQVVTAASTPSQQGGWYCETCKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVTQVKDRLKMHKQREED--RISGALRKPSAEDEFDSRVRESEDNEXXXXXXXXXXXXXXXXXXXXXXXXMEFQDPDMAAMMGFGGFGGG 230
            S +LG KQV NV  RR+WD + YE KAKER+E+GD+ +E   A   +  N KEEFQPA  GA GPAGS RAYLK R +KVDL S+L KTQV+T+A+  S QGG++CE CKC LKDSI YLDHINGKKHQR LG+SMRVERS+V  VK++L   + R ED  + SGA RK SA  E++ R+ E     XXXXXXXXXXXXXXXXXXXXXXXX        AAMMGFGGF GG
Sbjct:    7 SDDLGDKQVSNV-VRRSWDVELYEKKAKERLERGDEVEEARPASSKAALN-KEEFQPAPDGAQGPAGSRRAYLKARTEKVDLESRLHKTQVITSAAASSSQGGYWCEVCKCLLKDSIAYLDHINGKKHQRALGFSMRVERSSVGSVKEKLDKLRARAEDAAKASGAPRK-SAVQEYEERLAEYAAX-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAMMGFGGFSGG 233          
BLAST of mRNA_P-littoralis_Contig1025.1.1 vs. uniprot
Match: A0A7S2WR40_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WR40_9STRA)

HSP 1 Score: 162 bits (411), Expect = 2.170e-46
Identity = 124/220 (56.36%), Postives = 155/220 (70.45%), Query Frame = 0
Query:   16 RRTWDRDYYEAKAKERIEKGDD-YQEKDEAGGPSRRNHKEEFQPAAPGAAGPAGSARAYLKTREKKVDLSSKLGKTQVVTAASTPSQQGGWYCETCKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVTQVKDRLKMHKQREEDRISGALRKPSAEDEFDSRVRESEDNEXXXXXXXXXXXXXXXXXXXXXXXXMEFQDPDMAAMMGFGGFGGGGKKK 234
            RRTWD   YE KA+ER+ + +    E D    P R   ++EF+ A   AAGPAGSARA+L  R + + L    GKTQ++       + GGWYC+ C+C LKDS NYLDHINGKKHQR+LG+SMRVERSTV QV +R K+ K+R+ED +S A R P+A + ++ R+  +++ EXXXXXXXXXXXXXXXXXXXXXX  ME  DPD+ A MGFGGFGGG K K
Sbjct:   13 RRTWDVKEYEKKAQERLAREEGGIVEGDVDDRPVR--DRDEFRRAEDQAAGPAGSARAFLNNRNRALGLEKAAGKTQIIADNGLRQKGGGWYCDVCECLLKDSSNYLDHINGKKHQRKLGFSMRVERSTVGQVSERFKLAKKRKEDEMSVATR-PTAIEAYEQRIAAAQEEEXXXXXXXXXXXXXXXXXXXXXX--MEGMDPDLMAAMGFGGFGGGAKGK 227          
BLAST of mRNA_P-littoralis_Contig1025.1.1 vs. uniprot
Match: W7U2Z2_9STRA (Zinc finger matrin-type protein 2 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U2Z2_9STRA)

HSP 1 Score: 154 bits (390), Expect = 3.680e-43
Identity = 103/223 (46.19%), Postives = 134/223 (60.09%), Query Frame = 0
Query:   12 NVESRRTWDRDYYEAKAKERIEK---GDDYQEKDEAGGPSRRNHKEEFQPAAPGAAGPAGSARAYLKTREKKVDLSSKLGKTQVVTAASTPSQQGGWYCETCKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVTQVKDRLKMHKQREEDRISGALRKPSAEDEFDSRVRESEDNEXXXXXXXXXXXXXXXXXXXXXXXXMEFQ----DPDMAAMMGFGGF 227
            NVE RRTWD +++E  AKER+EK   GD  ++K     P     +EEFQ A  GAAGP GS RAYLK RE  + L  K+GK QVVT +S P QQGG++C+ C+C LKDS+ YLDHINGKKHQ+ LGYSMRVER  V +VK+RL   K+RE+++     R+ SA D +  ++ + E  +                           +    DP+MAA+MGFGGF
Sbjct:   17 NVE-RRTWDLEHFEKIAKERLEKEASGDVEKKK-----PGFVRKREEFQAAEAGAAGPEGSKRAYLKHREADLGLEEKVGKIQVVTGSSAPHQQGGYWCDICQCLLKDSMAYLDHINGKKHQKALGYSMRVERVGVDRVKERLNALKRREDEKKKAGPRE-SAIDAYQKKLEKDEAIKAQWKEARKEARINVIQRATKEEESTVEEEGGVDPEMAALMGFGGF 232          
BLAST of mRNA_P-littoralis_Contig1025.1.1 vs. uniprot
Match: A0A1Z5KJY6_FISSO (U4/U6.U5 tri-snRNP component SNU23 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KJY6_FISSO)

HSP 1 Score: 147 bits (372), Expect = 4.840e-40
Identity = 125/260 (48.08%), Postives = 157/260 (60.38%), Query Frame = 0
Query:    1 MSKELGYKQVKNVESRRTWDRDYYEAKAKERIEKGDD--YQEKDEAGGPSRR---------NHKEEFQPAAPGAAGPAGSARAYLKTREKKVDLSSKLGKTQVVTAASTPSQQG-GWYCETCKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVTQVKDRLKM-------HKQREEDRISGALRKPSAEDEFDSRVRESED---------NEXXXXXXXXXXXXXXXXXXXXXXXXMEFQDPDMAAMMGFGGFGGGGK 232
            M+  L YKQV NV SRR WD + YE +AKER  + ++  Y E+    G             ++KEEFQ A P AAGP GS RA+L+ R++ +DL SK+G +++V+A +   + G GW+C+ C C LKDS+ YLDHINGKKHQR+LG++MRVERST  QV DRLK         K+   D I        ++DE   R RE +              XXXXXXXXXXXXXXXXXX     E  DP+MAAMMGF GFGGG K
Sbjct:    9 MASNLNYKQVANV-SRRKWDVESYEQRAKERQAREEEAGYLEETRKKGTDNSTANAKNEDDSNKEEFQAAPPDAAGPEGSKRAFLRARQQAIDLESKVGTSEMVSADNAVVKSGIGWHCKVCDCFLKDSLTYLDHINGKKHQRKLGFTMRVERSTKDQVLDRLKSISQTSKSQKETSLDDIVDLNELVQSKDEALQREREEKXXXXXXXXAMENMRXXXXXXXXXXXXXXXXXXEEVDFEGIDPEMAAMMGFSGFGGGNK 267          
BLAST of mRNA_P-littoralis_Contig1025.1.1 vs. uniprot
Match: A0A8J5JCN4_9STRA (zf-C2H2_jaz domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5JCN4_9STRA)

HSP 1 Score: 142 bits (357), Expect = 2.600e-38
Identity = 108/227 (47.58%), Postives = 138/227 (60.79%), Query Frame = 0
Query:   10 VKNVESRRTWDRDYYEAKAKERIEKGDDYQEKDEAGGPSRRNHKEEFQPAAPGAAGPAGSARAYLKTREKKVDLSSKLGKTQVVTAASTPSQQGGWYCETCKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVTQVKDRLKMHKQREEDRISGALRKPSAEDEFDSRVRESEDNEXXXXXXXXXXXXXXXXXXXXXXXXMEFQDPD----MAAMMGFGGFGGGGK 232
            V NV +R+TWDR +YE  A+ R E   + +E  +A     ++ KEEFQ A  GAAGPAGSARA+LK R  K+ L + +G  +VV +    S+ GG+YCE C+CGLKDS+ YLDHINGKKH R+LGYSMRVERSTV QVK+RL+ ++           +K  A +E ++RV+      XXXXXXXX                   + PD    M AMMGFGGFGG  K
Sbjct:   16 VANV-ARQTWDRAHYEKLAQLRAEGQLEKEETKKA----IKSSKEEFQSANEGAAGPAGSARAFLKARTAKMSLETSVGTVKVVKSEDL-SKNGGYYCEVCECGLKDSVAYLDHINGKKHLRKLGYSMRVERSTVDQVKNRLQNYE-----------KKLKAAEEEEARVKXXXXXXXXXXXXXXDTLDQDKNDDADKKPEAADEVPDADAEMMAMMGFGGFGGSKK 225          
BLAST of mRNA_P-littoralis_Contig1025.1.1 vs. uniprot
Match: W2PLF3_PHYPN (U1-type domain-containing protein n=11 Tax=Phytophthora TaxID=4783 RepID=W2PLF3_PHYPN)

HSP 1 Score: 142 bits (358), Expect = 2.920e-38
Identity = 118/237 (49.79%), Postives = 153/237 (64.56%), Query Frame = 0
Query:   10 VKNVESRRTWDRDYYEAKAKERIEKGDDYQEKDEAGGPSRRNHKEEFQPAAPGAAGPAGSARAYLKTREKKVDLSSKLGKTQVVTAASTPSQQGGWYCETCKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVTQVKDRLKMHKQREEDRISGALRKPSAEDEFDSRVRESEDNEXXXXXXXXXXXXXXXXXXXXXXXXMEFQ--------------DPDMAAMMGFGGFGGGGK 232
            V NV +R+TWDR +YE  A+ R E   + +E  +      ++ KEEFQ A  GAAGPAGSARA+LK R  K+ L S +G  +VV +    S+ GG+YCE C+CGLKDS+ YLDHINGKKH R+LGYSMRVERSTV QVK+RL+   +R+ D +    +K  A ++++ +++ +E+  XXXXXXXXXXXXXXXXXXX                       D +M AMMGFGGFGG  K
Sbjct:   13 VANV-TRQTWDRAHYEKLAQLRAEGKLEKEETKKV----IKSTKEEFQAANEGAAGPAGSARAFLKARTNKMSLESSVGTVKVVKSDDV-SKNGGYYCEVCECGLKDSVAYLDHINGKKHLRKLGYSMRVERSTVDQVKNRLQSASKRKWDPLMA--KKLDAMEDYEKKLKAAEEEXXXXXXXXXXXXXXXXXXXXALEQDKSDDADKKPEAADEALDADAEMMAMMGFGGFGGSKK 241          
BLAST of mRNA_P-littoralis_Contig1025.1.1 vs. uniprot
Match: A0A3R7GK79_9STRA (U1-type domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7GK79_9STRA)

HSP 1 Score: 142 bits (358), Expect = 3.080e-38
Identity = 107/239 (44.77%), Postives = 142/239 (59.41%), Query Frame = 0
Query:   10 VKNVESRRTWDRDYYEAKAKERIEKGDDYQEKDEAGGPSRRNHKEEFQPAAPGAAGPAGSARAYLKTREKKVDLSSKLGKTQVVTAASTPSQQGGWYCETCKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVTQVKDRLKMHKQREEDRISGALRKPSAEDEFDSRVRESEDNEXXXXXXXXXXXXXXXXXXXXXXXXMEFQ----------------DPDMAAMMGFGGFGGGGK 232
            V NV +R+TWDR++YE  AK R E   + +E  +      ++ KEEFQ A   AAGPAGSARA+LK R  K+ L + +G  +VV +    S+ GG+YCE C+CGLKDS+ YLDHINGKKH R+LGYSMRVERSTV QVK RL+   +R+ D +    +K     +++ +V+E+E+ E       XXXXXXXX            +                D +M +MMGFGGFGG  K
Sbjct:   13 VANV-ARQTWDREHYEKLAKLRAEGQLEQEETKKV----IKSSKEEFQAADDRAAGPAGSARAFLKARTSKMSLENSVGTVKVVKSDDL-SKNGGYYCEVCECGLKDSVAYLDHINGKKHLRKLGYSMRVERSTVDQVKSRLQSASKRKWDPLM--TKKLDTMADYEKKVKEAEEEEARIKRQKXXXXXXXXLGDQQTSEVKSEKATDKKPEAEDEAVPDADTEMMSMMGFGGFGGSKK 243          
BLAST of mRNA_P-littoralis_Contig1025.1.1 vs. uniprot
Match: A0A4D9DA28_9STRA (U1-type domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DA28_9STRA)

HSP 1 Score: 150 bits (378), Expect = 4.590e-38
Identity = 92/175 (52.57%), Postives = 119/175 (68.00%), Query Frame = 0
Query:   12 NVESRRTWDRDYYEAKAKERIEK---GDDYQEKDEAGGPSRRNHKEEFQPAAPGAAGPAGSARAYLKTREKKVDLSSKLGKTQVVTAASTPSQQGGWYCETCKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVTQVKDRLKMHKQREEDRISGALRKPSAEDEFDSRVRESE 183
            NVE RRTWD +++E  AKER+EK   GD  ++K     P     +EEFQ A  GAAGP GS RAYLK RE  + L  K+GK QVVT +S P QQGG++C+ C+C LKDS+ YLDHINGKKHQ+ LGYSMRVER  V +VK+RL   K+RE+++     R+ SA D ++ ++   E
Sbjct:   17 NVE-RRTWDLEHFEKIAKERLEKEASGDVEKKK-----PGFVRKREEFQAAETGAAGPEGSKRAYLKHREADLGLEEKVGKIQVVTGSSAPHQQGGYWCDICQCLLKDSMAYLDHINGKKHQKALGYSMRVERVGVDRVKERLNALKRREDEKRKAGPRE-SAIDAYEKKLENDE 184          
BLAST of mRNA_P-littoralis_Contig1025.1.1 vs. uniprot
Match: UPI00145566CC (zinc finger matrin-type protein 2-like n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI00145566CC)

HSP 1 Score: 139 bits (351), Expect = 1.140e-37
Identity = 109/218 (50.00%), Postives = 133/218 (61.01%), Query Frame = 0
Query:   16 RRTWDRDYYEAKAKERIEKGDDYQEKDEAGGPSRRNHKEEFQPAAPGAAGPAGSARAYLKTREKKVDLSSKLGKTQVVTAASTPSQQGGWYCETCKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVTQVKDRLKMHKQREEDRISGALRKPSAEDEFDSRVRESEDNEXXXXXXXXXXXXXXXXXXXXXXXXMEFQDPDMAAMMGFGGFGGGGKK 233
            RR WDRD +E  AKER++K DD          S  N ++  +P            R  LK RE KVDL S+LGK+QV+T  +  SQ GG+YC  C C +KDSIN+LDHINGKKHQR LG SM+VERST+ QVK R +++K++ E+              F+SR++E     XXXXXXXXXXXXXXXXX           DPDMAAMMGF GFGG  KK
Sbjct:   14 RRKWDRDEFEKIAKERLDKEDD---------DSTENERKRNEPPI---------RRELLKQREYKVDLESRLGKSQVITKTTPSSQMGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMKVERSTLDQVKKRFELNKRKREEXXXXXX--------FESRMQELRXXXXXXXXXXXXXXXXXXXXADDDDLDSGV-DPDMAAMMGFSGFGGAKKK 204          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1025.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KKT3_9PHAE6.980e-12793.56U1-type domain-containing protein n=2 Tax=Ectocarp... [more]
A0A835ZCC8_9STRA1.150e-5362.34U1-type domain-containing protein n=1 Tax=Tribonem... [more]
A0A7S2WR40_9STRA2.170e-4656.36Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
W7U2Z2_9STRA3.680e-4346.19Zinc finger matrin-type protein 2 n=1 Tax=Nannochl... [more]
A0A1Z5KJY6_FISSO4.840e-4048.08U4/U6.U5 tri-snRNP component SNU23 n=2 Tax=Fistuli... [more]
A0A8J5JCN4_9STRA2.600e-3847.58zf-C2H2_jaz domain-containing protein n=1 Tax=Phyt... [more]
W2PLF3_PHYPN2.920e-3849.79U1-type domain-containing protein n=11 Tax=Phytoph... [more]
A0A3R7GK79_9STRA3.080e-3844.77U1-type domain-containing protein n=3 Tax=Phytopht... [more]
A0A4D9DA28_9STRA4.590e-3852.57U1-type domain-containing protein n=1 Tax=Nannochl... [more]
UPI00145566CC1.140e-3750.00zinc finger matrin-type protein 2-like n=1 Tax=Ast... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 179..210
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 82..134
e-value: 1.2E-6
score: 29.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 146..209
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 18..79
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 146..234
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 18..56
IPR003604Matrin/U1-C-like, C2H2-type zinc fingerSMARTSM00451ZnF_U1_5coord: 102..136
e-value: 5.8E-8
score: 42.5
IPR022755Zinc finger, double-stranded RNA bindingPFAMPF12171zf-C2H2_jazcoord: 105..130
e-value: 2.5E-6
score: 27.6
IPR040107U4/U6.U5 small nuclear ribonucleoprotein component Snu23PANTHERPTHR45986ZINC FINGER MATRIN-TYPE PROTEIN 2coord: 1..230
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 99..144

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1025contigP-littoralis_Contig1025:1183..5787 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1025.1.1mRNA_P-littoralis_Contig1025.1.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig1025 362..6099 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig1025.1.1 ID=prot_P-littoralis_Contig1025.1.1|Name=mRNA_P-littoralis_Contig1025.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=235bp
MSKELGYKQVKNVESRRTWDRDYYEAKAKERIEKGDDYQEKDEAGGPSRR
NHKEEFQPAAPGAAGPAGSARAYLKTREKKVDLSSKLGKTQVVTAASTPS
QQGGWYCETCKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVTQVKDR
LKMHKQREEDRISGALRKPSAEDEFDSRVRESEDNEERRKRQKKEAKRLA
KKKQQEEEEEMEFQDPDMAAMMGFGGFGGGGKKK*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003604Matrin/U1-like-C_Znf_C2H2
IPR022755Znf_C2H2_jaz
IPR040107Snu23
IPR036236Znf_C2H2_sf