mRNA_P-littoralis_Contig169.10.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig169.10.1
Unique NamemRNA_P-littoralis_Contig169.10.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig169.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig169contigP-littoralis_Contig169:24371..28060 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size183
Hectar predicted targeting categoryother localisation
Exons2
Cds size183
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789810.148863-CDS-P-littoralis_Contig169:24370..244701680789810.148863-CDS-P-littoralis_Contig169:24370..24470Pylaiella littoralis U1_48CDSP-littoralis_Contig169 24371..24470 +
1680789810.160086-CDS-P-littoralis_Contig169:27977..280601680789810.160086-CDS-P-littoralis_Contig169:27977..28060Pylaiella littoralis U1_48CDSP-littoralis_Contig169 27978..28060 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig169.10.1prot_P-littoralis_Contig169.10.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig169 24371..28060 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig169.10.1

>prot_P-littoralis_Contig169.10.1 ID=prot_P-littoralis_Contig169.10.1|Name=mRNA_P-littoralis_Contig169.10.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=61bp
MTIGDPGGRTKLANMLATQPSRSSLSARVAAQQGLNRVWHGPEYSARCGL
RIEGGVRTIAS
back to top

mRNA from alignment at P-littoralis_Contig169:24371..28060+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig169.10.1 ID=mRNA_P-littoralis_Contig169.10.1|Name=mRNA_P-littoralis_Contig169.10.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3690bp|location=Sequence derived from alignment at P-littoralis_Contig169:24371..28060+ (Pylaiella littoralis U1_48)
ATGACCATAGGAGATCCGGGGGGTCGGACAAAACTGGCGAACATGCTCGC
CACGCAGCCCTCACGCTCGTCTCTGAGCGCACGGGTCGCTGCGCAACAAG
GTTAGGAGCATAGAGTGTGTAAGTCTGGCTTTCTCGGACAGAAGTCCGAT
TGTCAAACGGTGTAGTGTACGCAGAGCAATGTCCAAACTTCGGACCCATA
ACCGTCACAATGCCGTATCTCTCCGCTTGGGCACACTAAAATGGACTGGT
TTGTCAAGCAGTTTGTTTGCACAATCAGAACGCTGTCCTCCTGCTGCAAC
AGCTGAACCCCGCAGCATAACCTCCCCAACATGTTGCACAGCACCACCTC
AGTAGAAGCTGGGGGAGTGCTTCACACCCTGTCATGGAGCATAGCCGCGT
CAGACGTTTTTTTTTGTCACTTGTGTCTCAATATTGTCACGGACCCACCG
CCGTGTTCGACTCAAGATGATACACCCCCTAGACCGACAATCAAAGCACG
ATTATCGACAACTATGGTACATGACTATCAAAAGAACAACTTGGACGGTA
ACTGTACGAGATCTCCGAAAGTTCGCTCGATTGAGGGTTCTCATTCTAAG
AAGGCGTGCACGGCACATGCGGGGACACGTCAGGACAGGACCCTCTGCAC
CAGCCCTTTACCGTACACCCATCCGATAGCTCGAGCATCTACTGGTCTCG
CACTCGGTGTGCGCTCTAGTACCATCACAGGCCCGGCTGGCGGCGAAGGA
AGGGTGCCCAATCGTCAACGGTGAGTCGAGAAAAAGGAAAACATGACCAA
ACATGACCATAGGAGATCCGGGGGGTCGGACAGAATTGGCGAACATGCTC
GCCACGCAGCCCTCACGCTCGTTTCTGAGCGCACGGGTCGCTGCGCAACA
AGGTTAGGAGCAATCAGTATGTAAGGCTGGCTTTCTCGGATACAAGTCCG
TTTGTCAAACGGTGTAGTGTACGCAGAGCAATATCCAAACAGCGGATCAC
AACTGCACAACGTCGCCGAGGGTGCCCAGGGACCCTGAAAAGTAGCCTAC
TTCTCGGGCATACAATTGTACGCATATCTTAAAGTCTAATAATAACTTGA
AAAACTAGCTCTACTGCCGTATAATCCTAGTGTGTGTCACGCTGGGGTAC
ACGGCGCTGAGGGTGAAGAACAACCCCGCAACCGGGGCAAATAGGTGGTG
CCCAGCACCGCAGCACCTCGTTGAGGGTTAGGGCGAATCCAATATACGCT
GCTTCGACCAAGACTGTATGTGTTTCCTTGCCACATTGCGTTTGGTAGTT
CATCACGGTATGCGACGACGGGCTCACTTCCGGTGCATCCGTCACCACAT
ATTTTCTACTTGTTGGTGCAACACAGCAGCAGTGTTTATATAACAGCTGG
TAGATACCTTGCTAATAAAAAAATGTTCGACAGACGAAGTGCATGTATGT
CCCCATTTATTTTCCCTTTTTTCTTTGAGTTATCTAGTCTTGGTAGACGT
CTGGTAGAGGCGTAAAATAAGTGGAAGGTGATAGATAGGGAGGGGTCAAG
GACAGCATCACCACACGCATACGCCATGCCTGCTGTGTACACCTTCGGCA
AATCCGGCTGGTAGTACACCGCATTCCCCCCGCAATCAAAAATTCCCCCG
GCCCCAACCTGCGACTTCACCTGGGGGGATTGCTGTGAGCAGGCGCGGGG
TGTGGGCTGCTTTTGCTGCTGCTGACACCGCTGCCGCTGATTCTGGGCGA
AACCTCCGCCAGTCCCTGACTGCTGTATAAATGACTGCTGCTGCTGCTGT
TGCTGCTGCTGCTGCTGCTGTTGTTGCGAGATTGCGCCGCATCCTCCCTG
AACTCCAAAACTCCCAAGAAAACCGGAGCTCCAAACCATGCTTCACCTTC
TCCACCACCGATGCACTCTCCACGCTCGCTCCCGTTTCACTGCTGCTGTA
GTAACAGCGTCCGTCTGACGCACACAAATAGAAAACACCTACCCGCCGTC
GTTCCAAGAGGTGACACACACGGCACACACCCAAATACACACACCACCAC
GTGCCGTTCCAAAAAGTGACACGACTCCTGTTGTTGTTCCAAGTAGTGAC
ACAATAGCGTAAATACACCACCGCCGTTCCGAGAAGTGACACGGCTGCTC
AAACGCTAGTACCCTACTGCCCACACGCAGGCCACGATCGATCGTGTTTG
GGTGCAGACAGCTCCTTGTCAGAAGCGCGAGCCAAGGTCGACTCAAAACC
TTGATTCATCAACGAGAGAGAGAGAGCTCTCAGAGAGTGAGACATCACGT
CCCATGACAATGGTAGATGACAAGAATAAATGACCATTGGATGACGGCAG
AACAGCGTCCCTCCTAAAAACAGTACAGTATTGGGCTATGGTACATGACT
ATTAATAGAACAACTTGGACGGTAACTGAGCGAGATCTCCGAAAGTGCAC
TCGATTGAGGGTTCTCATTCTGAGAAGGCGTGCACGGCACATGAGGGGAT
GGTACAGGACCATAGGGACAGGACCCTCTCCACCCGCCCTTCACCGTACA
CCCATCCGATAGCTCGAGCATCCACTGGTCTCGCACTCGGTGTGCGCTCT
AGTACCATCACAGGCGCGGCTGGCGGCGAAGGAAGGGTGCCCAATCGTCA
ACGGTGAGTCGAGAAAAAGGAAAACATCACCAAACATGACCACAGGAGAT
CCGGGGGGTCGGACAAAACTGGCGAACATGCTCGCCACGCAGCCCTCACG
CTCGTCTCTGAGCGTACGGGTTGCTGCGCAACAAGGTTAGGAGCATAGAG
TGTGTAAGTCTGGCTTTCTCGGACAGAAGTCCGATTGTCAAACGGTGTAG
TGTACGCAGAGCAATGTCCAAACTTCGGACCCATAACCGTCACAATGCCG
TATCTCTCCGCTTGGGCACACTAAAATGGACTGGTTTGTCAAGCAGTTTG
TTTGCACAATCAGAACGCTGTCCTCCTGCTGCAACAGCTGAACCCCGCAG
CATAACCTCCCCAACATGTTGCACAGCACCACCTCAGTAGAAGCTGGGGG
AGTGCTGCACACCCTGTCATGTAGCATAGCCGCGTCAGACGCCTTTTTTG
TCACTTGTGTCTCAATATTGTCACGGACCCACCGCCGTGTTCGACTCAAG
ATGATACACCCCCTAGACCGACAATCAAAGCACGATTATCGACAACGAAG
CGACGAGGAAGAGGACTTACGTGTCGAAACGATACCCTGTGAGAGAGCTC
TCAACCTGCCCGTAGCAACGCGGACGTTTTCCGCGCTACCACTATTTCAG
CTGTTGTTGATAAGTCGAGCTATGGAAATCGGTCCAGGTGATGTGTTGTC
TTGCGTCGCACCACGGCCGTGGTAGGTGTGTTATCCTACGTCGTACAGCG
TATGCACCCCCCCCGGCAGCAGCATGTTGTTCGCATACATAGCTACGCAG
CTGATGCTTCCGGCGTCCATCCTTGTTCTGCATGATCATGTACTAAAATT
AGCCTCCATGTTGGGTGGGGTCCTCACGAAGGGCCATCAAGCGGTCAACC
AGCACTTCAGCCGCGTTCATGTGGTAGCTCCTTCCCCTGCCTGGTTTCAA
ATTTCAGGGTTGAACAGGGTGTGGCATGGACCCGAATACTCTGCGCGATG
TGGTCTCCGGATCGAAGGAGGGGTCCGGACCATCGCCAGT
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig169:24371..28060+

>mRNA_P-littoralis_Contig169.10.1 ID=mRNA_P-littoralis_Contig169.10.1|Name=mRNA_P-littoralis_Contig169.10.1|organism=Pylaiella littoralis U1_48|type=CDS|length=183bp|location=Sequence derived from alignment at P-littoralis_Contig169:24371..28060+ (Pylaiella littoralis U1_48)
ATGACCATAGGAGATCCGGGGGGTCGGACAAAACTGGCGAACATGCTCGC
CACGCAGCCCTCACGCTCGTCTCTGAGCGCACGGGTCGCTGCGCAACAAG
GGTTGAACAGGGTGTGGCATGGACCCGAATACTCTGCGCGATGTGGTCTC
CGGATCGAAGGAGGGGTCCGGACCATCGCCAGT
back to top