mRNA_P-littoralis_Contig168.44.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig168.44.1
Unique NamemRNA_P-littoralis_Contig168.44.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig168.44.1 vs. uniprot
Match: D7G5U8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5U8_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 6.530e-22
Identity = 58/138 (42.03%), Postives = 86/138 (62.32%), Query Frame = 3 
Query:    3 MSPLVTTALTVLRNESNTEDWFTFSQHLNALVRGSITLGRLDDRELLDQLQFRGDDMVEQGGHPAAVLRVFSEMLPNKRHVSRETTFRDRGKLRDINKLHS----ASTAVSGAAHGYPG--HLAAHHAARVAASSTAP 398
            M+PL TTALT LR E   EDW++F  H++A++   +TLG +  R +LD   +RG+DM+ Q G P  V  +F++++PN R++SRETT RDR +L+ I+ +      A+T  +    GY G    AA  A+ +AA  TAP
Sbjct:  181 MNPLPTTALTPLRTEKGKEDWYSFKPHVDAIIAKGVTLGLMTWRSMLDDFVYRGNDMLLQFGVPEKVFGIFTDLMPNARNISRETTLRDRSRLKAIDTISGGWKLAATLATAHLSGYAGAYQQAASQASTIAAGITAP 318
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig168.44.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G5U8_ECTSI6.530e-2242.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig168contigP-littoralis_Contig168:232667..233814 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1025
Hectar predicted targeting categoryother localisation
Exons2
Cds size681
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789808.626732-UTR-P-littoralis_Contig168:232666..2326681680789808.626732-UTR-P-littoralis_Contig168:232666..232668Pylaiella littoralis U1_48UTRP-littoralis_Contig168 232667..232668 +
1680789808.652301-UTR-P-littoralis_Contig168:233472..2338141680789808.652301-UTR-P-littoralis_Contig168:233472..233814Pylaiella littoralis U1_48UTRP-littoralis_Contig168 233473..233814 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789808.6355407-CDS-P-littoralis_Contig168:232668..2332861680789808.6355407-CDS-P-littoralis_Contig168:232668..233286Pylaiella littoralis U1_48CDSP-littoralis_Contig168 232669..233286 +
1680789808.643969-CDS-P-littoralis_Contig168:233409..2334721680789808.643969-CDS-P-littoralis_Contig168:233409..233472Pylaiella littoralis U1_48CDSP-littoralis_Contig168 233410..233472 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig168.44.1prot_P-littoralis_Contig168.44.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig168 232669..233472 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig168.44.1

>prot_P-littoralis_Contig168.44.1 ID=prot_P-littoralis_Contig168.44.1|Name=mRNA_P-littoralis_Contig168.44.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=227bp
MSPLVTTALTVLRNESNTEDWFTFSQHLNALVRGSITLGRLDDRELLDQL
QFRGDDMVEQGGHPAAVLRVFSEMLPNKRHVSRETTFRDRGKLRDINKLH
SASTAVSGAAHGYPGHLAAHHAARVAASSTAPQPRGRGSSVRGGGGRYSS
AGTSVSLPFTPSISPPAATGRRPAHQGGSARGNGRGASAPPPPPSNAAAA
DRQRYTRRCKRGGHRAVDCTFPPYSG*
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mRNA from alignment at P-littoralis_Contig168:232667..233814+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig168.44.1 ID=mRNA_P-littoralis_Contig168.44.1|Name=mRNA_P-littoralis_Contig168.44.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1148bp|location=Sequence derived from alignment at P-littoralis_Contig168:232667..233814+ (Pylaiella littoralis U1_48)
AGATGAGTCCGCTCGTCACCACGGCGCTCACCGTCCTTCGGAACGAGTCG
AACACAGAAGATTGGTTTACTTTCTCCCAACACCTCAACGCCCTCGTCAG
GGGATCCATTACACTTGGCCGCCTCGACGATCGTGAACTCCTGGACCAAC
TCCAGTTTCGTGGAGACGACATGGTCGAACAAGGAGGACACCCAGCCGCC
GTTTTGCGCGTCTTCTCCGAGATGCTTCCGAACAAACGCCATGTCTCGCG
GGAGACCACCTTTCGGGACCGCGGAAAACTCCGCGACATCAACAAGCTCC
ACAGCGCGTCAACCGCAGTGTCCGGAGCAGCGCACGGATATCCTGGCCAT
TTAGCCGCTCACCACGCCGCACGTGTGGCGGCGTCGTCCACCGCTCCACA
GCCGCGGGGTAGGGGTTCGAGCGTTCGCGGTGGGGGAGGTCGCTACTCTT
CTGCAGGGACTTCGGTCTCCCTGCCGTTTACTCCGTCTATTTCTCCGCCT
GCCGCCACGGGCCGACGCCCTGCCCATCAAGGAGGCTCTGCCCGCGGTAA
CGGGCGGGGTGCATCCGCTCCACCCCCGCCCCCTTCCAACGCTGCGGCCG
CCGACCGGCAAAGGTACACGGACAAACTCCGGGAGAACCAGCAGGCCATG
ACTTCTTCGCCCAACGCCGACCGCTGCCACAACTACGCCGATAAGGGTCG
CGTAGACCTACACCACCACAAAGCGTGTGCTTTCTCCCTGTGCCGCCGCT
GCAAACGCGGAGGGCACCGCGCGGTGGACTGCACATTTCCCCCTTACAGC
GGTTGACCTTGTTGATATAGGATCTTTGGACGGCCATTCCGGGTGCTGAC
ACTTGCCCGAGCTGAGCGCATCGTTTTCGTGGGGGTGTAGTGTACTGTGT
TTGCTGAGCTCGTTTTCGTGGGGGCGTAGTGTACTGTGTTTTTCCTCGTG
TGTTTTCCTCCTGCGCGTTTCTAGCTTAACGAACGGTGTGATGGGTTTTT
CCTACCATAGGGAACGGCGTGCCCGTTGATGGGCTTTGTTGCTTCTGGCC
GTAGCCGTCCAAACGATTTGCGTTTCCGTTCGTCGCAACCGACGGTGGTG
AGTTTCTCATTTTGCCCCGCAATCAGCCGAGATTACTTGCGGCAGCCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig168:232667..233814+

>mRNA_P-littoralis_Contig168.44.1 ID=mRNA_P-littoralis_Contig168.44.1|Name=mRNA_P-littoralis_Contig168.44.1|organism=Pylaiella littoralis U1_48|type=CDS|length=681bp|location=Sequence derived from alignment at P-littoralis_Contig168:232667..233814+ (Pylaiella littoralis U1_48)
ATGAGTCCGCTCGTCACCACGGCGCTCACCGTCCTTCGGAACGAGTCGAA
CACAGAAGATTGGTTTACTTTCTCCCAACACCTCAACGCCCTCGTCAGGG
GATCCATTACACTTGGCCGCCTCGACGATCGTGAACTCCTGGACCAACTC
CAGTTTCGTGGAGACGACATGGTCGAACAAGGAGGACACCCAGCCGCCGT
TTTGCGCGTCTTCTCCGAGATGCTTCCGAACAAACGCCATGTCTCGCGGG
AGACCACCTTTCGGGACCGCGGAAAACTCCGCGACATCAACAAGCTCCAC
AGCGCGTCAACCGCAGTGTCCGGAGCAGCGCACGGATATCCTGGCCATTT
AGCCGCTCACCACGCCGCACGTGTGGCGGCGTCGTCCACCGCTCCACAGC
CGCGGGGTAGGGGTTCGAGCGTTCGCGGTGGGGGAGGTCGCTACTCTTCT
GCAGGGACTTCGGTCTCCCTGCCGTTTACTCCGTCTATTTCTCCGCCTGC
CGCCACGGGCCGACGCCCTGCCCATCAAGGAGGCTCTGCCCGCGGTAACG
GGCGGGGTGCATCCGCTCCACCCCCGCCCCCTTCCAACGCTGCGGCCGCC
GACCGGCAAAGGTACACGCGCCGCTGCAAACGCGGAGGGCACCGCGCGGT
GGACTGCACATTTCCCCCTTACAGCGGTTGA
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