mRNA_P-littoralis_Contig168.38.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig168.38.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE) HSP 1 Score: 308 bits (790), Expect = 1.430e-97 Identity = 139/192 (72.40%), Postives = 170/192 (88.54%), Query Frame = 1
Query: 1 VVACLQVLARGNVF*DIYFMSFISVQTTAATFHSFCKHFAREMYDEHIYLPTGDYETKVMSDYERIGFTGAIGSTDVTHLAWGVCPYNQARSFTGKEGYPTVAYQVTVDHTKCAVAVTPGFTGSTNDKTIIQFDSAETRIRNDPIYTKREYRLYEADGTPYEQEGCHWLVDYGYHRWKTLIPPTKCPINQGD 576
V+ACLQ+LARGN F DIY MSFIS+QT AATFH F ++FAREMY EHI+LPTGDY+ KVM+ Y+R+GF+GA GSTDVTH+ WG+CPYNQARS+TGKEGYPTVAYQVTVDHTK +AVTPGFTGSTNDK+II++D+A T+IR DPIY+++E+ +YEADGTPY+ +GC+ LVD GYH+W TLIPP+K PI+Q D
Sbjct: 159 VLACLQILARGNCFADIYHMSFISMQTAAATFHRFTRYFAREMYAEHIFLPTGDYQKKVMTQYDRLGFSGATGSTDVTHIPWGMCPYNQARSYTGKEGYPTVAYQVTVDHTKRVLAVTPGFTGSTNDKSIIRYDTAVTKIREDPIYSEKEFTVYEADGTPYQLKGCYLLVDNGYHKWVTLIPPSKYPIDQND 350
BLAST of mRNA_P-littoralis_Contig168.38.1 vs. uniprot
Match: A0A6H5KY50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY50_9PHAE) HSP 1 Score: 293 bits (750), Expect = 1.500e-92 Identity = 134/204 (65.69%), Postives = 170/204 (83.33%), Query Frame = 1
Query: 1 VVACLQVLARGNVF*DIYFMSFISVQTTAATFHSFCKHFAREMYDEHIYLPTGDYETKVMSDYERIGFTGAIGSTDVTHLAWGVCPYNQARSFTGKEGYPTVAYQVTVDHTKCAVAVTPGFTGSTNDKTIIQFDSAETRIRNDPIYTKREYRLYEADGTPYEQEGCHWLVDYGYHRWKTLIPPTKCPINQGDKCLFQKA*ELAQ 612
V+ACLQ+L+RGNVF DIY MSFIS QT A+TFH FCK+FA E+YDE++YLPTG+ KVM Y+RIGF GA+GSTDVTH+ WG+CPYNQAR +TGKEG PTVA+QVTVDH+ +AVT GFTG+TNDKTII++D A TRIR DP+YT+++Y+LY DG +E++GC+ LVD GYH+W+TLIPP+KCPI++GD +F K E A+
Sbjct: 84 VLACLQILSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGEDLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPSKCPIDRGD-LIFSKRLESAR 286
BLAST of mRNA_P-littoralis_Contig168.38.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE) HSP 1 Score: 293 bits (750), Expect = 2.150e-91 Identity = 134/204 (65.69%), Postives = 170/204 (83.33%), Query Frame = 1
Query: 1 VVACLQVLARGNVF*DIYFMSFISVQTTAATFHSFCKHFAREMYDEHIYLPTGDYETKVMSDYERIGFTGAIGSTDVTHLAWGVCPYNQARSFTGKEGYPTVAYQVTVDHTKCAVAVTPGFTGSTNDKTIIQFDSAETRIRNDPIYTKREYRLYEADGTPYEQEGCHWLVDYGYHRWKTLIPPTKCPINQGDKCLFQKA*ELAQ 612
V+ACLQ+L+RGNVF DIY MSFIS QT A+TFH FCK+FA E+YDE++YLPTG+ KVM Y+RIGF GA+GSTDVTH+ WG+CPYNQAR +TGKEG PTVA+QVTVDH+ +AVT GFTG+TNDKTII++D A TRIR DP+YT+++Y+LY DG +E++GC+ LVD GYH+W+TLIPP+KCPI++GD +F K E A+
Sbjct: 175 VLACLQILSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGEDLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPSKCPIDRGD-LIFSKRLESAR 377
BLAST of mRNA_P-littoralis_Contig168.38.1 vs. uniprot
Match: D7FPI7_ECTSI (Transposon protein, putative, Pong sub-class n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPI7_ECTSI) HSP 1 Score: 272 bits (696), Expect = 1.890e-84 Identity = 140/267 (52.43%), Postives = 183/267 (68.54%), Query Frame = 1
Query: 1 VVACLQVLARGNVF*DIYFMSFISVQTTAATFHSFCKHFAREMYDEHIYLPT---GDYETKVMSDYERIGFTGAIGSTDVTHLAWGVCPYNQARSFTGKEGYPTVAYQVTVDHTKCAVAVTPGFTGSTNDKTIIQFDSAETRIRNDPIYTKREYRLYEADGTPYEQEGCHWLVDYGYHRWKTLIPPTKCPINQGDKCLFQKA*ELAQGRRVLLRHRQRPISYLQACHPVPPEGRPGQRVLHVLYPPQHAAELRQQGRDERRSQLGRE 792
V+A L +L RGN F IY MS++S T A FH FCKHFAREMYDEHIYLP+ G+ + VM Y+R+GF+GA+GS DVTH+ W CPYN RS+TGKEG PT+ YQVTV+H A AVT GFTGSTNDKTI+ +D+A +IR D YT++ + +Y DGT +GC+ LVD GYH+W+ L+ + P + LF++A E A+GR +LLRH +RP+ +A H VP G QRVLHVL+ QHAA LR+ GR + +G++
Sbjct: 126 VLAWLTILGRGNCFASIYQMSWMSAATVQAMFHMFCKHFAREMYDEHIYLPSEQNGELD-HVMKQYDRLGFSGAMGSMDVTHIVWNKCPYNLPRSYTGKEGVPTIGYQVTVNHAGRASAVTEGFTGSTNDKTIVCWDAAVEKIRTDKQYTEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWQILMGAHQVPAERERSPLFEEAGERAEGRGMLLRHPERPLQDPEARHGVPRAGAHRQRVLHVLHLAQHAAHLRRNGRAGGKHAMGQQ 391
BLAST of mRNA_P-littoralis_Contig168.38.1 vs. uniprot
Match: A0A6H5JCU6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCU6_9PHAE) HSP 1 Score: 232 bits (592), Expect = 2.120e-68 Identity = 105/185 (56.76%), Postives = 140/185 (75.68%), Query Frame = 1
Query: 1 VVACLQVLARGNVF*DIYFMSFISVQTTAATFHSFCKHFAREMYDEHIYLPTGDYETKVMSDYERIGFTGAIGSTDVTHLAWGVCPYNQARSFTGKEGYPTVAYQVTVDHTKCAVAVTPGFTGSTNDKTIIQFDSAETRIRNDPIYTKREYRLYEADGTPYEQEGCHWLVDYGYHRWKTLIPPTK 555
++ LQ+L RGN F DI +S +S AATFH FCKHFA+E+++EHIYLPTG Y+ +VM Y+++G TGAIGSTDVTH+ WG+CP+ RS+TGKEG+PT+AYQVTVDH A+A+T GFTG+TNDKTII++D+ I+ D YTKR Y+L ADGT E++GC+++VD GYH +L P +
Sbjct: 251 ILTALQILGRGNCFDDICQLSLMSKPMAAATFHKFCKHFAQELFEEHIYLPTGSYQDEVMCMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRAIAITSGFTGATNDKTIIRYDAGVHTIKTDAQYTKRTYKLRRADGTFRERKGCYYIVDNGYHEVNSLGHPNR 435
BLAST of mRNA_P-littoralis_Contig168.38.1 vs. uniprot
Match: A0A6H5JBE2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE2_9PHAE) HSP 1 Score: 230 bits (587), Expect = 1.290e-67 Identity = 111/201 (55.22%), Postives = 144/201 (71.64%), Query Frame = 1
Query: 1 VVACLQVLARGNVF*DIYFMSFISVQTTAATFHSFCKHFAREMYDEHIYLPT---GDYETKVMSDYERIGFTGAIGSTDVTHLAWGVCPYNQARSFTGKEGYPTVAYQVTVDHTKCAVAVTPGFTGSTNDKTIIQFDSAETRIRNDPIYTKREYRLYEADGTPYEQEGCHWLVDYGYHRWKTLIPPTKCPINQGDKCLFQK 594
V+ACL +L RGNVF IY +S++S T FH FC+HFA EMYDEHI+LP+ G+ + +VM YE++GF GA+GSTDVTH+ W CPYNQ RS+TGKEG PTV YQVTV+H +AVT GFTGSTNDKTII D A RIR D Y ++ + +++ DGT +GC+ +VD GYH+W+ LI P+K P+++ D LF K
Sbjct: 128 VLACLTILGRGNVFGSIYNLSWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELD-RVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGRSYTGKEGKPTVGYQVTVNHAGRVLAVTEGFTGSTNDKTIICCDEAVDRIRTDKQYAEKPFTVHKKDGTTETLKGCYLIVDNGYHKWRMLIEPSKYPLSEAD-LLFSK 326
BLAST of mRNA_P-littoralis_Contig168.38.1 vs. uniprot
Match: A0A6H5JHI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI0_9PHAE) HSP 1 Score: 228 bits (581), Expect = 1.780e-67 Identity = 111/201 (55.22%), Postives = 143/201 (71.14%), Query Frame = 1
Query: 1 VVACLQVLARGNVF*DIYFMSFISVQTTAATFHSFCKHFAREMYDEHIYLPT---GDYETKVMSDYERIGFTGAIGSTDVTHLAWGVCPYNQARSFTGKEGYPTVAYQVTVDHTKCAVAVTPGFTGSTNDKTIIQFDSAETRIRNDPIYTKREYRLYEADGTPYEQEGCHWLVDYGYHRWKTLIPPTKCPINQGDKCLFQK 594
V+A L +L RGN F IY +S++S +T FH FCKHFAREMYDEHIYLP+ G+ + VM Y+R+GF+GA+GS DVTH+ W CPYN ARS+TGKEG PTV YQVTV+H A+AVT GFT STNDKT + +D+ +IR D YT++ + +Y DGT +GC+ LVD GYH+WK L+ PTK P+++ D LF K
Sbjct: 99 VLAWLTILGRGNCFASIYQVSWMSAKTVQTMFHKFCKHFAREMYDEHIYLPSEQNGELD-HVMKQYDRLGFSGAMGSMDVTHIGWSKCPYNLARSYTGKEGVPTVGYQVTVNHAGRAIAVTEGFTDSTNDKTTVCWDAVVEKIRTDNQYTEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWKILMEPTKYPLSEND-ILFSK 297
BLAST of mRNA_P-littoralis_Contig168.38.1 vs. uniprot
Match: A0A6H5K796_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K796_9PHAE) HSP 1 Score: 221 bits (564), Expect = 3.260e-65 Identity = 104/187 (55.61%), Postives = 132/187 (70.59%), Query Frame = 1
Query: 16 QVLARGNVF*DIYFMSFISVQTTAATFHSFCKHFAREMYDEHIYLPTGDYETKVMSDYERIGFTGAIGSTDVTHLAWGVCPYNQARSFTGKEGYPTVAYQVTVDHTKCAVAVTPGFTGSTNDKTIIQFDSAETRIRNDPIYTKREYRLYEADGTPYEQEGCHWLVDYGYHRWKTLIPPTKCPINQGD 576
QVL +GN F D+ +S +S TFH FC+HFA EM+DEHIYLPTG Y +VM + ++G+TGA GSTDVTH+ W +CP+ RSFTGKEG+PT+AY VTVDH +AVT GFTG+TNDKTII++DS +IR YT+REY+L +A+GT + GC +VD GYH W TLI P+K P D
Sbjct: 42 QVLGKGNCFDDVEQLSKMSKSMAQPTFHKFCRHFAAEMFDEHIYLPTGTYLDEVMGIFHQLGWTGACGSTDVTHIGWNMCPFTLGRSFTGKEGFPTIAYDVTVDHDGRDLAVTNGFTGATNDKTIIRYDSGVNKIRTASQYTEREYKLRKANGTKRMRRGCFLIVDNGYHEWVTLIAPSKYPQRNED 228
BLAST of mRNA_P-littoralis_Contig168.38.1 vs. uniprot
Match: A0A6H5KNX4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX4_9PHAE) HSP 1 Score: 222 bits (565), Expect = 1.510e-64 Identity = 114/228 (50.00%), Postives = 146/228 (64.04%), Query Frame = 1
Query: 1 VVACLQVLARGNVF*DIYFMSFISVQTTAATFHSFCKHFAREMYDEHIYLPTGDYET--KVMSDYERIGFTGAIGSTDVTHLAWGVCPYNQARSFTGKEGYPTVAYQVTVDHTKCAVAVTPGFTGSTNDKTIIQFDSAETRIRNDPIYT----------------------------KREYRLYEADGTPYEQEGCHWLVDYGYHRWKTLIPPTKCPINQGDKCLFQK 594
V+A L +L RGN F IY MS++S +T FH FC+HFAREMYDE I+LPT + VM Y+R+GFTGA+GS DVTH+AW CPYNQARS+TGKEG+PT+AYQVTVDH A+AVT GFTGSTNDKTI+ +D+A +I D YT ++ + +Y DGT +GC+ LVD GYH+W+ LI P+K P+++ D LF K
Sbjct: 86 VLAWLTILGRGNCFASIYQMSWMSAKTVQGMFHKFCRHFAREMYDEQIHLPTEESGKLDHVMKQYDRLGFTGAVGSMDVTHIAWSRCPYNQARSYTGKEGFPTIAYQVTVDHAGRAIAVTEGFTGSTNDKTIVCWDTAVEKIWTDKHYTXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWQILIEPSKYPLSEND-LLFSK 312
BLAST of mRNA_P-littoralis_Contig168.38.1 vs. uniprot
Match: A0A6H5KH50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH50_9PHAE) HSP 1 Score: 211 bits (538), Expect = 1.720e-62 Identity = 97/165 (58.79%), Postives = 127/165 (76.97%), Query Frame = 1
Query: 1 VVACLQVLARGNVF*DIYFMSFISVQTTAATFHSFCKHFAREMYDEHIYLPTGDYETKVMSDYERIGFTGAIGSTDVTHLAWGVCPYNQARSFTGKEGYPTVAYQVTVDHTKCAVAVTPGFTGSTNDKTIIQFDSAETRIRNDPIYTKREYRLYEADGTPYEQEG 495
V+ LQ+L RGN F DI +S +S AATFH FCKHFA+E+++EHIYLPTG Y+ +VM Y+++G TGAIGSTDVTH+ WG+CP+ RS+TGKEG+PT+AYQVTVDH A+A+T GFTG+TNDKTI+++D+ I+ D YTKR Y+L ADGT E++G
Sbjct: 4 VLTALQILGRGNCFDDICQLSLMSKPMAAATFHKFCKHFAQELFEEHIYLPTGSYQDEVMCMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRAIAITSGFTGATNDKTIMRYDAGVHTIKTDAQYTKRTYKLRRADGTYRERKG 168 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig168.38.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig168.38.1 >prot_P-littoralis_Contig168.38.1 ID=prot_P-littoralis_Contig168.38.1|Name=mRNA_P-littoralis_Contig168.38.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=181bp MSFISVQTTAATFHSFCKHFAREMYDEHIYLPTGDYETKVMSDYERIGFTback to top mRNA from alignment at P-littoralis_Contig168:141667..143519- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig168.38.1 ID=mRNA_P-littoralis_Contig168.38.1|Name=mRNA_P-littoralis_Contig168.38.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1853bp|location=Sequence derived from alignment at P-littoralis_Contig168:141667..143519- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig168:141667..143519- >mRNA_P-littoralis_Contig168.38.1 ID=mRNA_P-littoralis_Contig168.38.1|Name=mRNA_P-littoralis_Contig168.38.1|organism=Pylaiella littoralis U1_48|type=CDS|length=543bp|location=Sequence derived from alignment at P-littoralis_Contig168:141667..143519- (Pylaiella littoralis U1_48)back to top |