mRNA_P-littoralis_Contig168.35.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-littoralis_Contig168.35.2
Unique Name	mRNA_P-littoralis_Contig168.35.2
Type	mRNA
Organism	Pylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))

Homology

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BLAST of mRNA_P-littoralis_Contig168.35.2 vs. uniprot
Match: D8LJE4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJE4_ECTSI)

HSP 1 Score: 249 bits (636), Expect = 5.610e-69
Identity = 135/359 (37.60%), Postives = 193/359 (53.76%), Query Frame = 1

Query:  169 RLTSTPCPSCEEMFPRLEVSSEGLRVQNAEITLRGEPKSGTNMMFRWATATLIHTCELLDATFGEGSCHVK-RGIVRLNPGDIGHPNT---------FTLEPHLSSGR---GDPK---CSCG-VDRVMISLSQSRKHELPVHSSCRWWHTNTIPGLAQGCKTVNGRPVQNYADLWSCMQESPCEITDKSIQFVAMRDPRAVAVSTYFWVQTHRDPDLIRDHYPAFNQTLDESV----LKILESVCQWTAIRHILFGGFMPDNSTVFWYEDSNVNPLEWHYSWTQMAGLRLPPSWVEDIS----RQAESAMDKGYNVHPGGVEGSADRTWKDEVDSDLWDDMDGLLRRWLPPILLARLGV 1170
            +L +  CP CE MF +L  +      Q+ E+ LRGEPKSGT+ MF WA   L+ TCE L   +GEG+C  + RG           P T         F  +P+   GR   G P    C C  VD+V I +S   KH+LPV  SC W H + +    +GC TVNGR V NY D   C+Q+ PC I D  IQ + +RDPRAVAVS++F ++TH        H+P +    DESV    L++L ++C +  +R+++    +   +  F Y++S  +PL+WH  W    GL  PP  V   +    R+      KG + HPGG E +  RTW+DE+  D+ + ++G+ R WLPP+LL + G+
Sbjct:   77 KLQADECPPCETMFGKLNGAQ-----QHVELQLRGEPKSGTSFMFEWAVNALMVTCEELGRLYGEGTCTFRWRGFFSRRKQKPVSPETALVDMKEVFFVFKPNRQHGRSSAGGPSASPCPCSTVDKVSIMVSSLFKHDLPVPPSCPWQHVDNVTPENKGCTTVNGRRVGNYTDTVECLQQHPCRIVDDRIQMLILRDPRAVAVSSFFHLKTH--------HHPFWKHLTDESVDSFVLRMLPTICHFIHLRYLVLHEKLGGKTVEFTYDESLADPLQWHQRWLSSVGLTPPPGVVLQATNTSLRREYGFAGKGVDKHPGGKEATEKRTWEDEISHDVAEQLEGICREWLPPVLLEKFGI 422

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BLAST of mRNA_P-littoralis_Contig168.35.2 vs. uniprot
Match: A0A6H5KDV7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDV7_9PHAE)

HSP 1 Score: 236 bits (601), Expect = 5.230e-67
Identity = 110/228 (48.25%), Postives = 152/228 (66.67%), Query Frame = 1

Query:  493 RVMISLSQSRKHELPVHSSCRWWHTNTIPGLAQGCKTVNGRPVQNYADLWSCMQESPCEITDKSIQFVAMRDPRAVAVSTYFWVQTHRDPDLIRDHYPAFNQTLDESVLKILESVCQWTAIRHILFGGFMPDNSTVFWYEDSNVNPLEWHYSWTQMAGLRLPPSWVEDISRQAESAMDKGYNVHPGGVEGSADRTWKDEVDSDLWDDMDGLLRRWLPPILLARLGVPP 1176
            RV IS+S   KH LPV+ SC W H +       GC + +G PV+  ADLW+CMQ++PCEITD  +QFV +RDPRAVAVSTYF  + H+D     ++Y   + +LD++VL+IL  +C +T +RHILFGG + + + +FWYE +  +P +WHY W   AGL LP  W++ +   AE+   K  N HPGG E S +RTW+DEV   +  +MD +LR+WLP +LLAR G+PP
Sbjct:    4 RVEISISTVDKHRLPVNESCPWSHGSGTVHEGDGCWSFDGHPVETGADLWACMQKTPCEITDNRLQFVPIRDPRAVAVSTYFH-RVHKD-----NNYQKLHPSLDQTVLEILPVLCHFTTLRHILFGGLLSNRTELFWYEQTVEDPFDWHYRWASFAGLILPGGWIDGMV--AENQAHKHLNPHPGGAETSDNRTWQDEVSPGIRPEMDSILRKWLPGVLLARYGIPP 223

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BLAST of mRNA_P-littoralis_Contig168.35.2 vs. uniprot
Match: A0A6H5JWG1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWG1_9PHAE)

HSP 1 Score: 224 bits (571), Expect = 9.000e-59
Identity = 139/317 (43.85%), Postives = 190/317 (59.94%), Query Frame = 1

Query: 2263 WGRALFYGDPRVRLRGF*ACAADACIMRLVEHGEVSEHGGCRPRQ*HTPEYLLSDQE*VFPVWC*PRPACDHLRLWGPLLVRGLPV-------------FS*LCWVRLRSSSRL*VADKVVAKFGVTENKETPMVVSLELEQFEADEPHAEEPLRSVV*PSMWLANQTRPDI*NAVRSVARCSHAPKQVHWQAALHGLMYKRFTSGFGITFQRGTVGGDRMQLFVESDFASKAADRRSVSSAVMMFPGA---WLCLNRSGVRNHC*WDEGDFI-LAASLEFHLFGTAMWGALWFSRIMS----------ELYLASNP 3132
            W   L  G   ++  GF  CAADAC+MRL+E G V+               ++   + +F +    +  CD    +G  L R +P+             FS    +   + S+  VA+K+VAKFGVT +KETPMVV L+LEQ++ADEP  +EP RS+V   MWLANQTRPDI NAVR+VAR SHAPK++HW+AALH LMY RFTSG+GITFQRGTVGGD M+LFV+SDFA+KA DRRSVS A++MF GA   +LC  +  V       E +++ ++  ++  +F   +W  ++  R +            ++LASNP
Sbjct:  223 WHHHLMRG---MKSLGFEPCAADACVMRLIESGVVTM-------------VVVIHVDDIFSIGL--KSRCDQ---FGVDLNRYVPISNLGELRWYAGCRFSRDTVLGTVTISQQAVAEKIVAKFGVTTDKETPMVVGLKLEQYDADEPDVDEPFRSLVGHLMWLANQTRPDILNAVRAVARYSHAPKRLHWEAALHVLMYVRFTSGYGITFQRGTVGGDHMELFVDSDFANKATDRRSVSGALVMFAGACVMYLCRTQKSVTLSS--TEAEYVAMSDGMKEAIFLRYLWKFIFPGRDVGCTPVWEDNVGAIHLASNP 516

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BLAST of mRNA_P-littoralis_Contig168.35.2 vs. uniprot
Match: A0A6H5L0A3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0A3_9PHAE)

HSP 1 Score: 213 bits (543), Expect = 1.230e-58
Identity = 125/246 (50.81%), Postives = 159/246 (64.63%), Query Frame = 1

Query: 2308 GF*ACAADACIMRLVEHGEVSEHGGCRPRQ*HTPEYLLSDQE*VFPVWC*PRPACDHLRLWGPLLVRGLPV-------------FS*LCWVRLRSSSRL*VADKVVAKFGVTENKETPMVVSLELEQFEADEPHAEEPLRSVV*PSMWLANQTRPDI*NAVRSVARCSHAPKQVHWQAALHGLMYKRFTSGFGITFQRGTVGGDRMQLFVESDFASKAADRRSVSSAVMMFPGA---WLCLNRSGV 2997
            GF  CAADAC+MRL+E G V+               ++   + +F +    +  CD    +G  L R +P+             FS    +   + S+  VA+K+VAKFGVT +KETPMVV L+LEQ++ADEP  +EP RS+V   MWLANQTRPDI NAVR+VAR SHAPK++HW+AALHGLMY RFTSGFG TFQRGTVGGD M+LFV+SDFA+    RRSVS A++MF GA   +LC  +  V
Sbjct:    8 GFEPCAADACVMRLIESGVVTM-------------VVVIHVDDIFSIGL--KSRCDQ---FGVDLNRYVPISNLGELRWYAGCRFSRDTVLGTVTISQQAVAEKIVAKFGVTTDKETPMVVGLKLEQYDADEPDVDEPFRSLVGHLMWLANQTRPDILNAVRAVARYSHAPKRLHWEAALHGLMYVRFTSGFGTTFQRGTVGGDHMELFVDSDFANH---RRSVSGALVMFAGACVMYLCRTQKSV 232

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BLAST of mRNA_P-littoralis_Contig168.35.2 vs. uniprot
Match: A0A6H5KGK7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGK7_9PHAE)

HSP 1 Score: 224 bits (571), Expect = 4.600e-57
Identity = 139/317 (43.85%), Postives = 190/317 (59.94%), Query Frame = 1

Query: 2263 WGRALFYGDPRVRLRGF*ACAADACIMRLVEHGEVSEHGGCRPRQ*HTPEYLLSDQE*VFPVWC*PRPACDHLRLWGPLLVRGLPV-------------FS*LCWVRLRSSSRL*VADKVVAKFGVTENKETPMVVSLELEQFEADEPHAEEPLRSVV*PSMWLANQTRPDI*NAVRSVARCSHAPKQVHWQAALHGLMYKRFTSGFGITFQRGTVGGDRMQLFVESDFASKAADRRSVSSAVMMFPGA---WLCLNRSGVRNHC*WDEGDFI-LAASLEFHLFGTAMWGALWFSRIMS----------ELYLASNP 3132
            W   L  G   ++  GF  CAADAC+MRL+E G V+               ++   + +F +    +  CD    +G  L R +P+             FS    +   + S+  VA+K+VAKFGVT +KETPMVV L+LEQ++ADEP  +EP RS+V   MWLANQTRPDI NAVR+VAR SHAPK++HW+AALH LMY RFTSG+GITFQRGTVGGD M+LFV+SDFA+KA DRRSVS A++MF GA   +LC  +  V       E +++ ++  ++  +F   +W  ++  R +            ++LASNP
Sbjct:  447 WHHHLMRG---MKSLGFEPCAADACVMRLIESGVVTM-------------VVVIHVDDIFSIGL--KSRCDQ---FGVDLNRYVPISNLGELRWYAGCRFSRDTVLGTVTISQQAVAEKIVAKFGVTTDKETPMVVGLKLEQYDADEPDVDEPFRSLVGHLMWLANQTRPDILNAVRAVARYSHAPKRLHWEAALHVLMYVRFTSGYGITFQRGTVGGDHMELFVDSDFANKATDRRSVSGALVMFAGACVMYLCRTQKSVTLSS--TEAEYVAMSDGMKEAIFLRYLWKFIFPGRDVGCTPVWEDNVGAIHLASNP 740

[Close]

BLAST of mRNA_P-littoralis_Contig168.35.2 vs. uniprot
Match: A0A6H5K5L3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5L3_9PHAE)

HSP 1 Score: 215 bits (548), Expect = 6.930e-56
Identity = 128/261 (49.04%), Postives = 163/261 (62.45%), Query Frame = 1

Query: 2263 WGRALFYGDPRVRLRGF*ACAADACIMRLVEHGEVSEHGGCRPRQ*HTPEYLLSDQE*VFPVWC*PRPACDHLRLWGPLLVRGLPV-------------FS*LCWVRLRSSSRL*VADKVVAKFGVTENKETPMVVSLELEQFEADEPHAEEPLRSVV*PSMWLANQTRPDI*NAVRSVARCSHAPKQVHWQAALHGLMYKRFTSGFGITFQRGTVGGDRMQLFVESDFASKAADRRSVSSAVMMFPGA---WLCLNRSGV 2997
            W   L  G   ++  GF  CAADAC+MRL+E G V+               ++   + +F +    +  CD    +G  L R +P+             FS    +   + S+  VA+K+VAKF VT  KETPMVV L+LEQ++ADEP  +EP RS+V   MWLANQTRPDI NAVR+VAR SHAPK++HW+AALH LMY RFTSG GITFQRGTVGGD M+L V+SDFA+KA DRRSVS A++MF GA   +LC  +  V
Sbjct:  210 WHHHLMRG---MKSLGFEPCAADACVMRLIESGVVTM-------------VVVIHVDDIFSIGL--KSRCDQ---FGVDLNRYVPISNLGELRWYAGCRFSRDTVLGTVTISQQAVAEKIVAKFDVTTEKETPMVVRLKLEQYDADEPDVDEPFRSLVGHLMWLANQTRPDILNAVRAVARYSHAPKRLHWEAALHVLMYVRFTSGCGITFQRGTVGGDHMELLVDSDFANKATDRRSVSGALVMFAGACVMYLCRTQKSV 449

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BLAST of mRNA_P-littoralis_Contig168.35.2 vs. uniprot
Match: A0A6H5KAC2_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAC2_9PHAE)

HSP 1 Score: 224 bits (571), Expect = 3.590e-55
Identity = 139/317 (43.85%), Postives = 190/317 (59.94%), Query Frame = 1

Query: 2263 WGRALFYGDPRVRLRGF*ACAADACIMRLVEHGEVSEHGGCRPRQ*HTPEYLLSDQE*VFPVWC*PRPACDHLRLWGPLLVRGLPV-------------FS*LCWVRLRSSSRL*VADKVVAKFGVTENKETPMVVSLELEQFEADEPHAEEPLRSVV*PSMWLANQTRPDI*NAVRSVARCSHAPKQVHWQAALHGLMYKRFTSGFGITFQRGTVGGDRMQLFVESDFASKAADRRSVSSAVMMFPGA---WLCLNRSGVRNHC*WDEGDFI-LAASLEFHLFGTAMWGALWFSRIMS----------ELYLASNP 3132
            W   L  G   ++  GF  CAADAC+MRL+E G V+               ++   + +F +    +  CD    +G  L R +P+             FS    +   + S+  VA+K+VAKFGVT +KETPMVV L+LEQ++ADEP  +EP RS+V   MWLANQTRPDI NAVR+VAR SHAPK++HW+AALH LMY RFTSG+GITFQRGTVGGD M+LFV+SDFA+KA DRRSVS A++MF GA   +LC  +  V       E +++ ++  ++  +F   +W  ++  R +            ++LASNP
Sbjct: 1523 WHHHLMRG---MKSLGFEPCAADACVMRLIESGVVTM-------------VVVIHVDDIFSIGL--KSRCDQ---FGVDLNRYVPISNLGELRWYAGCRFSRDTVLGTVTISQQAVAEKIVAKFGVTTDKETPMVVGLKLEQYDADEPDVDEPFRSLVGHLMWLANQTRPDILNAVRAVARYSHAPKRLHWEAALHVLMYVRFTSGYGITFQRGTVGGDHMELFVDSDFANKATDRRSVSGALVMFAGACVMYLCRTQKSVTLSS--TEAEYVAMSDGMKEAIFLRYLWKFIFPGRDVGCTPVWEDNVGAIHLASNP 1816

[Close]

BLAST of mRNA_P-littoralis_Contig168.35.2 vs. uniprot
Match: A0A6H5L3I3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3I3_9PHAE)

HSP 1 Score: 202 bits (513), Expect = 1.590e-54
Identity = 101/140 (72.14%), Postives = 120/140 (85.71%), Query Frame = 1

Query: 2551 SSSRL*VADKVVAKFGVTENKETPMVVSLELEQFEADEPHAEEPLRSVV*PSMWLANQTRPDI*NAVRSVARCSHAPKQVHWQAALHGLMYKRFTSGFGITFQRGTVGGDRMQLFVESDFASKAADRRSVSSAVMMFPGA 2970
            S S+  VA+K+VAKFGVT +KETPMVV L+LEQ++A EP  +EP RS+V   MWLANQTRPDI NAVR+VAR SHAPK++HW+AALH LMY RFTSG+GITFQRGTVGGD M+LFV+SDFA+KA DRRSVS A++MF GA
Sbjct:   66 SISQQAVAEKIVAKFGVTTDKETPMVVGLKLEQYDAVEPDVDEPFRSLVGHLMWLANQTRPDILNAVRAVARYSHAPKRLHWEAALHVLMYVRFTSGYGITFQRGTVGGDHMELFVDSDFANKATDRRSVSGALVMFAGA 205

[Close]

BLAST of mRNA_P-littoralis_Contig168.35.2 vs. uniprot
Match: A0A6H5JHE6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHE6_9PHAE)

HSP 1 Score: 200 bits (508), Expect = 1.720e-53
Identity = 101/146 (69.18%), Postives = 120/146 (82.19%), Query Frame = 1

Query: 2569 VADKVVAKFGVTENKETPMVVSLELEQFEADEPHAEEPLRSVV*PSMWLANQTRPDI*NAVRSVARCSHAPKQVHWQAALHGLMYKRFTSGFGITFQRGTVGGDRMQLFVESDFASKAADRRSVSSAVMMFPGA---WLCLNRSGV 2997
            VA+K+VAKFGVT +KETPMVV L+LEQ++ADEP  +EP RS+V   MWLANQTRPDI NAVR+VAR SHAPK++HW+AALH LMY RFT G GITFQRGT GGD M+LFV+SDFA+KA DRRSVS A++MF GA   +LC  +  V
Sbjct:   62 VAEKIVAKFGVTTDKETPMVVGLKLEQYDADEPDVDEPFRSLVGHLMWLANQTRPDILNAVRAVARYSHAPKRLHWEAALHVLMYVRFTRGNGITFQRGTEGGDHMELFVDSDFANKATDRRSVSGALVMFAGACVMYLCRTQKSV 207

[Close]

BLAST of mRNA_P-littoralis_Contig168.35.2 vs. uniprot
Match: A0A6H5KAQ1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAQ1_9PHAE)

HSP 1 Score: 214 bits (546), Expect = 4.490e-53
Identity = 121/248 (48.79%), Postives = 153/248 (61.69%), Query Frame = 1

Query: 2263 WGRALFYGDPRVRLRGF*ACAADACIMRLVEHGEVSEHGGCRPRQ*HTPEYLLSDQE*VFPVWC*PRPACDHLRLWGPLLVRGLPVFS*LCWVRLRSSSRL*VADKVVAKFGVTENKETPMVVSLELEQFEADEPHAEEPLRSVV*PSMWLANQTRPDI*NAVRSVARCSHAPKQVHWQAALHGLMYKRFTSGFGITFQRGTVGGDRMQLFVESDFASKAADRRSVSSAVMMFPGA---WLCLNRSGV 2997
            W   L  G   ++  GF  CAADAC+MRL+E G V+               ++   + +F +    +  CD                               VA+K+VAKFGVT +KETPMVV L+LEQ++ADEP  +EP R +V   MWLANQTRPDI NAVR+VAR SHAPK++HW+AALH LM+ RFTSG+GITFQRGTVGGD M+LFV+SDFA+KA DRRSVS A++MF GA   +LC  +  V
Sbjct:  678 WHHHLMRG---MKSLGFEPCAADACVMRLIESGVVTM-------------VVVIHVDDIFSIGL--KSRCDQA-----------------------------VAEKIVAKFGVTTDKETPMVVGLKLEQYDADEPDVDEPFRLLVGHLMWLANQTRPDILNAVRAVARYSHAPKRLHWEAALHVLMFVRFTSGYGITFQRGTVGGDHMELFVDSDFANKATDRRSVSGALVMFAGACVMYLCRTQKSV 878

The following BLAST results are available for this feature:

BLAST of mRNA_P-littoralis_Contig168.35.2 vs. uniprot

BLAST of mRNA_P-littoralis_Contig168.35.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LJE4_ECTSI	5.610e-69	37.60	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5KDV7_9PHAE	5.230e-67	48.25	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JWG1_9PHAE	9.000e-59	43.85	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5L0A3_9PHAE	1.230e-58	50.81	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KGK7_9PHAE	4.600e-57	43.85	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5K5L3_9PHAE	6.930e-56	49.04	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5KAC2_9PHAE	3.590e-55	43.85	Integrase catalytic domain-containing protein n=2 ...	[more]
A0A6H5L3I3_9PHAE	1.590e-54	72.14	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JHE6_9PHAE	1.720e-53	69.18	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KAQ1_9PHAE	4.490e-53	48.79	Integrase catalytic domain-containing protein n=1 ...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-littoralis_Contig168	contig	P-littoralis_Contig168:119126..126041 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Pylaiella littoralis U1_48 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	1
Start	1
Model size	4995
Hectar predicted targeting category	signal peptide
Exons	4
Cds size	1164

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-littoralis_Contig168.35.2	prot_P-littoralis_Contig168.35.2	Pylaiella littoralis U1_48	polypeptide	P-littoralis_Contig168 122918..126002 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680789808.1816206-UTR-P-littoralis_Contig168:119125..122917	1680789808.1816206-UTR-P-littoralis_Contig168:119125..122917	Pylaiella littoralis U1_48	UTR	P-littoralis_Contig168 119126..122917 -
1680789808.2299705-UTR-P-littoralis_Contig168:126002..126041	1680789808.2299705-UTR-P-littoralis_Contig168:126002..126041	Pylaiella littoralis U1_48	UTR	P-littoralis_Contig168 126003..126041 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680789808.1905923-CDS-P-littoralis_Contig168:122917..123444	1680789808.1905923-CDS-P-littoralis_Contig168:122917..123444	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig168 122918..123444 -
1680789808.2008705-CDS-P-littoralis_Contig168:123642..123824	1680789808.2008705-CDS-P-littoralis_Contig168:123642..123824	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig168 123643..123824 -
1680789808.2115462-CDS-P-littoralis_Contig168:125009..125229	1680789808.2115462-CDS-P-littoralis_Contig168:125009..125229	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig168 125010..125229 -
1680789808.219802-CDS-P-littoralis_Contig168:125767..126002	1680789808.219802-CDS-P-littoralis_Contig168:125767..126002	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig168 125768..126002 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-littoralis_Contig168:119126..126041-
coding sequence from alignment at P-littoralis_Contig168:119126..126041-

protein sequence of mRNA_P-littoralis_Contig168.35.2

>prot_P-littoralis_Contig168.35.2 ID=prot_P-littoralis_Contig168.35.2|Name=mRNA_P-littoralis_Contig168.35.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=388bp
MVLLPVMLLWSLSIVVSFAPPARSDPVVSMHVVEAAGNLTEWLRLTSTPC
PSCEEMFPRLEVSSEGLRVQNAEITLRGEPKSGTNMMFRWATATLIHTCE
LLDATFGEGSCHVKRGIVRLNPGDIGHPNTFTLEPHLSSGRGDPKCSCGV
DRVMISLSQSRKHELPVHSSCRWWHTNTIPGLAQGCKTVNGRPVQNYADL
WSCMQESPCEITDKSIQFVAMRDPRAVAVSTYFWVQTHRDPDLIRDHYPA
FNQTLDESVLKILESVCQWTAIRHILFGGFMPDNSTVFWYEDSNVNPLEW
HYSWTQMAGLRLPPSWVEDISRQAESAMDKGYNVHPGGVEGSADRTWKDE
VDSDLWDDMDGLLRRWLPPILLARLGVPPGPTFVPES*

mRNA from alignment at P-littoralis_Contig168:119126..126041-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-littoralis_Contig168.35.2 ID=mRNA_P-littoralis_Contig168.35.2|Name=mRNA_P-littoralis_Contig168.35.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=6916bp|location=Sequence derived from alignment at P-littoralis_Contig168:119126..126041- (Pylaiella littoralis U1_48)
ACAGCGAAACACAGGCAAGGGGATACGGCGACGCCCGGCATGGTCCTTCT
ACCAGTGATGCTTCTTTGGTCGCTCTCGATCGTGGTGTCATTCGCCCCAC
CTGCGAGGAGTGACCCTGTGGTTTCCATGCATGTCGTAGAAGCAGCCGGG
AATTTGACTGAATGGTTACGCCTGACTTCCACTCCATGTCCATCCTGTGA
AGAAATGTTCCCTCGGCTAGAAGTGTCAAGTGAGGGCCTACGCGTGCAGA
ACGCCGAAATTACTCTGCGCGGCGGTGAGTACGCCAGCAACATGCAAAGG
CTGTAAATCAATCTGTTAAGTCAACAAACTTTGAAATTGTGTTTTTACGT
GTGACGCAGGAGTGCTTCTCGTCTCATTCCGTTTATTGAACTGTATTCAG
AGCGTTTGTTCCTGCGTAGTGAGTAATACATGTGTCAGCCATCGCTCTGC
ACCTCGATACCTATGGTGCACTGCTGCTGTGTACCTCATTTCTAGACGCG
TCCATTCCTATCCTCTTCGAGAATCAAATAATCTTGCGAAGTGTCATTTC
GAGCACTTTGAGGACGCTTCAAGCCCGAGTGTTGTTACTTATTGTATCTT
GTGATTACTCTCGTGTTATCATACACGTACATCATCAGACAAGCCCACCA
CCTATCATACATACAGCCCGGCGCGTGCGTGTCCTGATTATTTACTGATT
ATTTATTTTGTTCCGTTAATCCTGGTTCTCCACTTCACCGCAATGAATGC
ATTTTTCATGTGGATGCTTTTTCCTCGAACTCTGTCCTTGTCTCTTCACA
CCCATGTCTAAGAACCGAAGTCAGGAACGAACATGATGTTTCGATGGGCG
ACGGCAACTCTGATCCACACGTGCGAATTGCTGGACGCCACTTTTGGCGA
AGGATCCTGCCACGTGAAGCGCGGTATTGTCCGCCTCAACCCTGGAGATA
TTGGCCACCCCAATACTTTCACCTTGGAGCCACACTTGTCTTCTGGCCGT
GGCGACCCAAAATGTTCTTGTGGTGTAGACCGGTGAGCGCTCGACGCGTG
AAAATCTCAGTGATTAGAGCCTCGTCGTCCATGTGCAGCACTGTCTCGTC
AGCCTTGCCGAATGTTGTCCCTGATACTTGACAGTTATTTCAGCTATGAG
CGTTCAGGACAGTGATGATTCGATGTACATGATCAAGAGGCCCGTGTATC
CAGCGTTTCAAGATCGTAAACAGATGCCTTGGATAAGTTTTGCCCTTTCG
TAGTTGAAAACGACGAGTGTGAGTGGGGTTCCTTTTTAACCTCCCCACCC
CCACCGTTTGCTCTACGGAGCGTGCCACACCACTGTGCTTCATCATCACT
GTACTTTTGTGTTTGATGTATTGACAGCAGTCGCACCATCCACGGGGTCA
TTGTTGCATGCATTCTTGTAGTGGGTGATTGCGGAACCCCTTTGCTTCGG
GGCATGTTCGGCTCTCGCCCACTTTCTCGCCATTTCTCTCGCAATGATAC
ACATGGTTTGTGCCAACGTATCCTGCTTCTAAGACGGCGTCCGCATGATT
AATGGTGTTCACGTGACAAGCCAGAACCGGCCAAACAGTTCGCTTTCACT
CTACTCCTGTGTGTCTGGTTCTTCCCTTTTAACTTGACCAGGATTGTTCG
CAAATGGCGCGTATCTACGATGCCTGTGACCCCTGACCTAACTTTGAAAA
CAATATGCCGTGGTGGTGATCGTTTCCTTCCTTCCTATCCGCGTTCGTTT
ATCTTGCCACACACATATCTATCCACACTCGCGCAAAGCAGCCTCGTGTT
GTCGTGTCTTTTTCACGCCGACAAACTCCTAATGTTCCACCCCTCGACAG
CATTGTACAAGTATACCTTTCTGAATATACGAAAGAACCCGCCATTAATA
CAGATCGTGAGGCGCCTTCAGACACTCGCATGCCCGTCGTCTTGTAGACC
AGCAAGCAGTTGCACTCCATTGATTACTTTGTTTCCTGCCTGCATATTGA
ACACGTATCCAGGGTATTCATCGTATTGTCGTGAGGTCATTGAACACTCC
ACTTTTTCTTCCAGCTTGTGAATAGGCGATGTTCGGCTATCGTCACCATA
ATTGCGTCTACGTGATCCAGCTTGCATGGCACAGCCTCCAAAGGTACGCA
GCTGATCGAAGAGTCCAACACCTTTCCCATACCCGTGTCTATCCTCGACT
TGTGTCAAATATCACAGGGTTATGATAAGCTTGTCGCAATCCAGGAAGCA
TGAGCTCCCAGTCCACTCATCTTGCCGATGGTGGCACACGAATACGATTC
CGGGCCTGGCTCAAGGCTGCAAGACTGTAAACGGTAGACCCGTTCAAAAC
TACGCCGATTTATGGTCCTGCATGCAAGAGTCGCCCTGCGAGATCACAGG
TACACATGTGTATTCCCGTCGACAACAATATGCGCTTGTGTCGTTCGTGT
CTCATCCATACGTCACTCGCTGGAGAGTACGCAGCAAGCACCCAGGTGTC
CTATCAACGAAGGTTGAGACTGATATTATTAACTTATTGATATTATCATT
GCGACCGCGATGCAATACCCCTTTTCCCCCAATCCGTCTTCGTCCAGACA
AAAGTATCCAGTTCGTAGCTATGCGTGATCCGAGGGCCGTGGCCGTCAGC
ACATACTTTTGGGTTCAGACCCACCGAGACCCTGATCTCATCAGGGATCA
CTACCCCGCGTTCAATCAAACGTTAGATGAATCGGTTCTGAAGATTCTCG
AGTCGGTTTGTCAATGGACAGCTATCCGCCATATACTCTTCGGCGGCTTC
ATGCCGGACAACTCTACCGTTTTTTGGTACGAAGACTCGAATGTCAACCC
ATTGGAATGGCACTACAGCTGGACACAAATGGCAGGCCTACGTCTACCAC
CTTCATGGGTGGAAGACATTTCGAGACAGGCGGAAAGCGCGATGGACAAA
GGGTACAACGTTCATCCTGGAGGGGTGGAAGGATCGGCAGACCGAACCTG
GAAGGACGAAGTGGATTCTGACCTCTGGGACGACATGGATGGTTTGCTAC
GTCGGTGGCTTCCGCCCATTCTACTGGCGCGGCTTGGGGTTCCGCCTGGG
CCCACTTTCGTTCCCGAGAGCTAGAGGGAAAAGGTTGGCGTGCGTTTGGA
CGTGACGTGATTTTATTCGTTGTGTGGCAAAAATTTCTCGAGGTGGACGT
TTTCAGGTGGGAATTTGGAGTATACTTCGACTGGTTGTGGGCGAAACTAA
CCTAATGACACTTTTTAGTGATGGTGTGACATCATCGGAGTGCGAACCCC
CGAAACCATCTTACTCCGGTGCGTATTGTCTTGCATTTCTTCCTTCGTTG
GGGACATAGTTCCCAAGATCGTCCATCCTGGGTTCGGACAGGTCTGAAGG
TCGCTCAGTTTGATCTGTGGCTGGAATTCGCCCCCAATACCGTGAGTGTA
ATGTTTTTCAGGGTGTTGTAGCTTTTAGTTTATTCTAATAGAGGCAGGCT
AAGTTAATTTCGAGCTTTGTGGAGTTATGGGCTTCGCTTTTCTTTTTGAG
GTGAGCTTGCTAATACGTGCTAGTATGTCTTTACAAAAGGCTCAACCTTT
TTATGTTTCTTGGGTGGTTGGTTATCCTCCACTGGTGGAGTCGATCTTAG
ACATAGGCCCTCCCACGAGTTCCTTCACGGATTCAGGTAAAAATTACCTT
TTGTGTGCGTTTCTGCTGGTTTGTACAAGTAAGCCAACTGAATAGCCCTG
CATGCAAAATTTTAACGGTTACCCTTAAAAACAGGTCTTTCGTTGGGGGA
TTCCTCGGTATTTTTGTCGCGGGATATCATTGCGGTTTGTAACCCGCGAG
AAATAGGAACTACCGTTACAGTTTGGTGTGATCCCTTTGCCATCCGAACT
GTTACCGATATCGGATTCGACAAAATGTTTTATCAATGTCAAGGTAACTG
TAGCCGATTAAATATTGAAATTGTCGCGATTTCTAGACACCGCGGTAAGG
TTTACCGCGAAAACAATACCTCGACAAAAGCGGACTACTTCAAAGTTTGA
ACTACTGTAGAATCACGGGCGTCGCTGCCCCTTAGCCCAAAGACCGCCTT
AGTACGTCAGCGGTGGATGTCATGTCAAAACGTTTCATGTTGCGGGTCCG
ACACATTCGCGCGTGTAATTGTTTTCTTGGTAATGGGGGCGAGCTCTGTT
CTATGGGGACCCTCGGGTACGTTTGCGGGGATTTTAGGCATGCGCTGCCG
ATGCGTGTATTATGCGCCTGGTTGAGCACGGTGAGGTTTCTGAGCATGGT
GGTTGTCGTCCACGTCAATGACACACTCCGGAGTATTTACTATCGGACCA
AGAGTAGGTGTTTCCAGTTTGGTGCTGACCTCGACCGGCATGTGACCATC
TCCGACTTTGGGGTCCTCTGCTGGTACGCGGGTTGCCGGTTTTCTCTTGA
CTGTGTTGGGTACGGTTACGATCCAGCAGTAGACTGTAGGTAGCAGATAA
GGTGGTTGCGAAGTTTGGTGTGACGGAAAACAAGGAGACGCCCATGGTTG
TTAGCCTAGAGCTTGAGCAATTTGAGGCAGACGAACCACATGCAGAGGAG
CCCTTGCGGTCGGTGGTTTGACCTTCAATGTGGCTGGCGAATCAAACTCG
CCCAGATATTTAAAATGCGGTGCGGTCCGTAGCGAGGTGTTCCCATGCGC
CGAAACAGGTGCACTGGCAAGCGGCGCTGCATGGTTTGATGTATAAAAGG
TTCACGAGTGGTTTTGGTATTACTTTTCAGAGGGGTACAGTGGGGGGAGA
CCGCATGCAACTTTTTGTCGAATCGGATTTCGCAAGCAAGGCAGCCGACA
GGCGGTCGGTTTCTAGTGCGGTGATGATGTTTCCCGGTGCGTGGCTCTGC
TTAAACAGATCCGGAGTACGTAACCATTGCTAATGGGATGAAGGAGACTT
TATTCTTGCGGCATCCCTGGAGTTTCATCTTTTCGGTACAGCGATGTGGG
GTGCCCTTTGGTTCTCGAGGATAATGTCGGAGCTTTACCTAGCCAGTAAC
CCACTATCCGAACGTGAAGCACATTGACATCTACCATCGTTTCAGTAATG
AACGTGTAGCAAGGGGAGAGTTTTAAATTGGTTAAAGTACTATCAGACCT
AAAGCGCGCCGATTTTATGTCAAAACACTATCTAAGGATGCTTTCTAACC
TGGTTTGCCTCTGATTCTGGTTGCAAGCTAACTATTGTTGTTTCAGTGCG
TATGTGACCCGCGTTGTATTCGACTTCAGGTGTTGGTATTTTGGTTTTGT
GTTCTGGTTGATTTTTGGTTTTGGATTTCGATCCACGGGATTTCTTCTGG
GTGTTGACTTCTGTTATGTTTTGTTTTTGACCTTGCTTCTTATCTGGTTT
GGAATTCCGTCGCGATTTACTTTGAGGTGTTATTTTTGTGTTTGTTAAAA
AAAAATGAGATTTAGACGACCCACGATTTAAAAGCGCAAAATTAAAAGCA
GCGGATATTGTTTTCGGTTTCGATATGGTTGTGGATTCAAAGTTATTGGC
TTTTTTAACGTGCCCGACAGGTTGGGTGCTGATTGTACTACTGTCGAGAA
CAATGGGGGGGGAGAGGTGTTCCATGATCGTCGCAGTATCAGCAGAGTTT
TTCATGGTTTGCGTTTTTGGTATTTGGATTTAGATGTTGCCCGCGAAATC
GGACGGGAATTCCGTATCGTAGTGCACACATTCGGGGATTTTGTTGCAGT
TTCCCTCTTAAGGCGGGGCGGGGCAGCTTGCAGACATGTGGCATGGGGTA
ATATTTTGTATTATCGAGAGAGGTTTACTTCGTACAAATATGTTCGCGTT
TTACCTGCGGATAGTTCTAGGAAATCTCGTGTGTTCTGGTTTTAAGTTGC
AGTACTGCACCGCGGAGAATGTGCGAGGCTGCTGACAGACACGATAATTT
GATTCATTTCGATTCGTTTCTTTGTTCTGACGAAATGTTAAAGCAGGAGG
GCTGTGCGATATTGGTCCATCTTGATTGTGTTGAAGCGTAGCAAAGATGT
AAGTAGGTTTTCCGTCACGTTTCTGAACACTGGCATTTAACTTGATGGGT
TTGAATTTTCTTGCATTTCAGGATTCGACATGTTCTGGTTAGCTTTTGTT
GAGGTTTTCGTGCTTCCGAAGAGTTTTTGAATTGGTCAACAAGTTGAAAT
TGGTTTTGTTCGAAAAACTTGTTCGGATGAATTGACGCATTTTTGCCAAA
AAACATCACCCTATTCTGACGAAATGTTGAAGTTTGTGTGAATATTTTCC
ACGGCATCTTCCTGATATTTGACTGTTTGAAAAACACTTTTTCTCAAGAT
AGTTTGTTGATATCAAGAGATTCTGAAGACATTTGGATTGGGATGCTTAT
GATTCGAGATAGTGTTTGGATTTCTGAGTATTTGCCGTTTTACCTGGTAA
TTCGTGGAGCGTTCCCTGGATCGTATCGAGTATCGAGTTGGAGCCTCTTG
GGGGTACCCGGTACTAGATACTTATCTACGGAGACTCTAGAATATGGGTG
GGATAAAGTGTGATGTCTCGTTCTCTGAGAGTTCTCTCTCTCTCTCTCTG
ATAATCAAGGTCTCCGGGTCAACCTCCTCCGGCGCTTCTGACTCGGAGCT
GTCTTCCTACAAACAAGCTCAGCTCAGGGTATTTGCGGAGCAAAGGGCAA
CTTAGCCAAGCAAGGCGGGCCGGGTGTGGGAACTTGCGATGATACTACTT
AGGGTTAGTTGTTATGTTCTTGGGCACCCTCTTACTCCTTGGTCACATAC
AGTGAGCGGCGTTTGTTTACCCTCTTGCCGTATCTTGAGTGCAGCCAGAA
CACTGCTCGACTCCCAACGTGATGGGTTCGGGAATATTTTGTTTATGTCC
CCATTCCGAGGAGACC

Coding sequence (CDS) from alignment at P-littoralis_Contig168:119126..126041-

>mRNA_P-littoralis_Contig168.35.2 ID=mRNA_P-littoralis_Contig168.35.2|Name=mRNA_P-littoralis_Contig168.35.2|organism=Pylaiella littoralis U1_48|type=CDS|length=1164bp|location=Sequence derived from alignment at P-littoralis_Contig168:119126..126041- (Pylaiella littoralis U1_48)
ATGGTCCTTCTACCAGTGATGCTTCTTTGGTCGCTCTCGATCGTGGTGTC
ATTCGCCCCACCTGCGAGGAGTGACCCTGTGGTTTCCATGCATGTCGTAG
AAGCAGCCGGGAATTTGACTGAATGGTTACGCCTGACTTCCACTCCATGT
CCATCCTGTGAAGAAATGTTCCCTCGGCTAGAAGTGTCAAGTGAGGGCCT
ACGCGTGCAGAACGCCGAAATTACTCTGCGCGGCGAACCGAAGTCAGGAA
CGAACATGATGTTTCGATGGGCGACGGCAACTCTGATCCACACGTGCGAA
TTGCTGGACGCCACTTTTGGCGAAGGATCCTGCCACGTGAAGCGCGGTAT
TGTCCGCCTCAACCCTGGAGATATTGGCCACCCCAATACTTTCACCTTGG
AGCCACACTTGTCTTCTGGCCGTGGCGACCCAAAATGTTCTTGTGGTGTA
GACCGGGTTATGATAAGCTTGTCGCAATCCAGGAAGCATGAGCTCCCAGT
CCACTCATCTTGCCGATGGTGGCACACGAATACGATTCCGGGCCTGGCTC
AAGGCTGCAAGACTGTAAACGGTAGACCCGTTCAAAACTACGCCGATTTA
TGGTCCTGCATGCAAGAGTCGCCCTGCGAGATCACAGACAAAAGTATCCA
GTTCGTAGCTATGCGTGATCCGAGGGCCGTGGCCGTCAGCACATACTTTT
GGGTTCAGACCCACCGAGACCCTGATCTCATCAGGGATCACTACCCCGCG
TTCAATCAAACGTTAGATGAATCGGTTCTGAAGATTCTCGAGTCGGTTTG
TCAATGGACAGCTATCCGCCATATACTCTTCGGCGGCTTCATGCCGGACA
ACTCTACCGTTTTTTGGTACGAAGACTCGAATGTCAACCCATTGGAATGG
CACTACAGCTGGACACAAATGGCAGGCCTACGTCTACCACCTTCATGGGT
GGAAGACATTTCGAGACAGGCGGAAAGCGCGATGGACAAAGGGTACAACG
TTCATCCTGGAGGGGTGGAAGGATCGGCAGACCGAACCTGGAAGGACGAA
GTGGATTCTGACCTCTGGGACGACATGGATGGTTTGCTACGTCGGTGGCT
TCCGCCCATTCTACTGGCGCGGCTTGGGGTTCCGCCTGGGCCCACTTTCG
TTCCCGAGAGCTAG