mRNA_P-littoralis_Contig168.28.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig168.28.1
Unique NamemRNA_P-littoralis_Contig168.28.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig168.28.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig168contigP-littoralis_Contig168:113651..114281 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size318
Hectar predicted targeting categoryother localisation
Exons2
Cds size291
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789807.8687904-UTR-P-littoralis_Contig168:113650..1136761680789807.8687904-UTR-P-littoralis_Contig168:113650..113676Pylaiella littoralis U1_48UTRP-littoralis_Contig168 113651..113676 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789807.8806393-CDS-P-littoralis_Contig168:113676..1137871680789807.8806393-CDS-P-littoralis_Contig168:113676..113787Pylaiella littoralis U1_48CDSP-littoralis_Contig168 113677..113787 +
1680789807.8910227-CDS-P-littoralis_Contig168:114101..1142811680789807.8910227-CDS-P-littoralis_Contig168:114101..114281Pylaiella littoralis U1_48CDSP-littoralis_Contig168 114102..114281 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig168.28.1prot_P-littoralis_Contig168.28.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig168 113677..114281 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig168.28.1

>prot_P-littoralis_Contig168.28.1 ID=prot_P-littoralis_Contig168.28.1|Name=mRNA_P-littoralis_Contig168.28.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=97bp
MPNEDVAAYFMKEVGQTWSPALKTLIAVSLLKESGLPIQVGSSAPRSGTT
KAVAGSRAVYSQACHLVLPFLHGITSHPAWKTPAIVDQHAVVKAAYL
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mRNA from alignment at P-littoralis_Contig168:113651..114281+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig168.28.1 ID=mRNA_P-littoralis_Contig168.28.1|Name=mRNA_P-littoralis_Contig168.28.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=631bp|location=Sequence derived from alignment at P-littoralis_Contig168:113651..114281+ (Pylaiella littoralis U1_48)
AGGACATTGCACGCAAGTCCAAGACCATGCCGAATGAGGACGTCGCCGCG
TACTTCATGAAAGAAGTGGGGCAGACGTGGTCTCCGGCGCTCAAGACGTT
GATCGCCGTCAGCCTCCTCAAGGAGTCAGGGCTACCTGTAAGTGCTGGTG
TTGCTCCAGCGGTTTTCACTCAAGCGCCCCCCCGCCAAACGCGTGTCACT
CAAGTTATTATTTCAACCAAATGAGTTACCATCGTGCTTAAGAATTATGA
ACTGGTCGGCAAGCAGCGGAAGATATGATGCCGTGTGTAGCGAGATGGCG
TGTATCGTTCTTTCATGGCTTTAATGGTACCCCAATCCAGGCGATGCTGG
GCCGTTCCAGCTCGGTACATGTATTTACGGTCATGCGCTCCCCCGGCTAT
AACCTTACCCCTATGCTTGCTATTGTCATTTTGTTTTTCGCACTGCGACA
GATCCAGGTAGGTTCTTCTGCCCCCCGCTCTGGCACCACAAAGGCTGTGG
CGGGGTCCAGGGCTGTTTACAGCCAAGCCTGCCACCTGGTACTGCCGTTC
TTGCATGGGATTACGTCCCACCCGGCATGGAAGACCCCTGCCATTGTCGA
TCAACATGCTGTCGTAAAGGCAGCATACCTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig168:113651..114281+

>mRNA_P-littoralis_Contig168.28.1 ID=mRNA_P-littoralis_Contig168.28.1|Name=mRNA_P-littoralis_Contig168.28.1|organism=Pylaiella littoralis U1_48|type=CDS|length=291bp|location=Sequence derived from alignment at P-littoralis_Contig168:113651..114281+ (Pylaiella littoralis U1_48)
ATGCCGAATGAGGACGTCGCCGCGTACTTCATGAAAGAAGTGGGGCAGAC
GTGGTCTCCGGCGCTCAAGACGTTGATCGCCGTCAGCCTCCTCAAGGAGT
CAGGGCTACCTATCCAGGTAGGTTCTTCTGCCCCCCGCTCTGGCACCACA
AAGGCTGTGGCGGGGTCCAGGGCTGTTTACAGCCAAGCCTGCCACCTGGT
ACTGCCGTTCTTGCATGGGATTACGTCCCACCCGGCATGGAAGACCCCTG
CCATTGTCGATCAACATGCTGTCGTAAAGGCAGCATACCTC
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