mRNA_P-littoralis_Contig168.26.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig168.26.1
Unique NamemRNA_P-littoralis_Contig168.26.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig168.26.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig168contigP-littoralis_Contig168:111603..113195 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size387
Hectar predicted targeting categoryother localisation
Exons2
Cds size387
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789807.828807-CDS-P-littoralis_Contig168:111602..1116821680789807.828807-CDS-P-littoralis_Contig168:111602..111682Pylaiella littoralis U1_48CDSP-littoralis_Contig168 111603..111682 -
1680789807.8409252-CDS-P-littoralis_Contig168:112888..1131951680789807.8409252-CDS-P-littoralis_Contig168:112888..113195Pylaiella littoralis U1_48CDSP-littoralis_Contig168 112889..113195 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig168.26.1prot_P-littoralis_Contig168.26.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig168 111603..113195 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig168.26.1

>prot_P-littoralis_Contig168.26.1 ID=prot_P-littoralis_Contig168.26.1|Name=mRNA_P-littoralis_Contig168.26.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=129bp
VGVYVHACCVCVVMEADDERGQSRGSGRTRLIPQPGRGFMCSACRWRFSS
LRDGRAHISTCKGGEPAPSEPIAPAASDAARSSVGGQGLGASDDPGGEAI
EDGASGMYDDGNASDGADDSPADRTKNTK
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mRNA from alignment at P-littoralis_Contig168:111603..113195-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig168.26.1 ID=mRNA_P-littoralis_Contig168.26.1|Name=mRNA_P-littoralis_Contig168.26.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1593bp|location=Sequence derived from alignment at P-littoralis_Contig168:111603..113195- (Pylaiella littoralis U1_48)
GTGGGGGTGTATGTGCATGCTTGTTGTGTGTGTGTCGTCATGGAGGCTGA
CGATGAGAGGGGACAGAGCAGAGGATCTGGTCGAACTCGACTTATCCCTC
AACCTGGCCGCGGATTTATGTGCAGTGCCTGTCGGTGGCGATTCTCATCC
CTCCGCGACGGAAGAGCCCATATTTCAACTTGCAAAGGGGGAGAGCCAGC
CCCTTCAGAGCCTATTGCACCTGCTGCGAGCGATGCCGCTAGGTCAAGCG
TGGGCGGTCAAGGATTGGGTGCTTCAGATGATCCGGGTGGCGAGGCCATA
GAAGACGGTGAGTTGACATGGACGAGGGAGAGATGAGCAGAGCGTGATCT
TAGATTGGCACCCTCCCGGTGCTATCGATACAGCAGTGTCCAGAATGCGA
CGTATAATATCACCCCCCCTCCCCCCCTGGGCTCTTTTTTTCCTCGAACG
ACGATTACGCCGCCACGAACAGGATACCAATATCAAAATATACGGTGCGT
TTTCACGACATATCTCCAACGCCACGCTTGTCGGCACCGAAAATGGGGCA
AGGGGGATATACCTGGTACAAAAAAAGTCTTATGTTTTCACTCCGTAGGG
GGGTCTTATCCTACGCAACCTACGGCTGTATCCTACGTATATATACCAAG
GGGTACTTATATACAGCCGCATATCGTTCTACCCCCCGCATAGGCAAGGG
CAACACCAATAGTGGCCAAACGGTTAGATGGCAGCTTTCTATTTTGTCGC
ATGCATGTTTATTTTTTACAAGCAGTTGGTCGGGGATTGCTGAGCAGAAT
TGTTGGGTTCCGTGCGATTTGGGTACCGTAAAGTACAGTCGAGGTCCCGG
TTTACCGGCCCCTAGTGGCAAGAAAAATAAGGGCCGGTAAACAGGGCAAA
CCGGTAAACCAGTATACCGGCATGTACCGGTAAACAGGTACCTGTTTACC
GGTACATGCCGGTATACTGGGGAAAACGCCCCCACGAGCGTAGGAAGAGC
AGGTGTATCTCCACAGACTTTGATGCAGTATGGCCTGTCTGTTTCTCCTG
CTGTCCTGGTAACCAGCACCTACAGTAGTAGTAGTATAGACGAGTGTGTG
ATCGCTGTACAGTACCCACTGCTGGCTGTTGGTACTGGTGTTGGTACTGC
TGGCCGATTCATTTGCTGCAGCGCATGACTGGCAGATACGGTTGACTTCC
TCGTCGCCTTCAGGATTTTGTATCTCGGCGCAAATGCGATGATGGTGTGC
AGGCAGGTGTTGGCTGCTACCCACAGCAACCGGAGTGCTGTGTTGTGTTG
TGTTGTGTCGTGTGCAGCAGTGTGTGTGGGAGTGTGCAGCAGCAGCAAAA
GGGGCTCCGCAAGCATGAAAAAAGGGAGGACCCCGGTATACCGGCACATA
ACCGGTAAACCGGGGTCATGTGCCTTGATCATTTTTAACAACGGCAGTAT
TTAAATCGTATCAAGTCGCCTGTGCTCGCTGTTGCTGCCACTTGCCCCCT
CAACTCGGCTCAGGCGCGAGCGGCATGTACGACGATGGTAACGCTTCCGA
TGGCGCCGACGATTCGCCTGCGGACCGAACGAAGAACACGAAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig168:111603..113195-

>mRNA_P-littoralis_Contig168.26.1 ID=mRNA_P-littoralis_Contig168.26.1|Name=mRNA_P-littoralis_Contig168.26.1|organism=Pylaiella littoralis U1_48|type=CDS|length=387bp|location=Sequence derived from alignment at P-littoralis_Contig168:111603..113195- (Pylaiella littoralis U1_48)
GTGGGGGTGTATGTGCATGCTTGTTGTGTGTGTGTCGTCATGGAGGCTGA
CGATGAGAGGGGACAGAGCAGAGGATCTGGTCGAACTCGACTTATCCCTC
AACCTGGCCGCGGATTTATGTGCAGTGCCTGTCGGTGGCGATTCTCATCC
CTCCGCGACGGAAGAGCCCATATTTCAACTTGCAAAGGGGGAGAGCCAGC
CCCTTCAGAGCCTATTGCACCTGCTGCGAGCGATGCCGCTAGGTCAAGCG
TGGGCGGTCAAGGATTGGGTGCTTCAGATGATCCGGGTGGCGAGGCCATA
GAAGACGGCGCGAGCGGCATGTACGACGATGGTAACGCTTCCGATGGCGC
CGACGATTCGCCTGCGGACCGAACGAAGAACACGAAG
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