mRNA_P-littoralis_Contig167.67.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig167.67.1
Unique NamemRNA_P-littoralis_Contig167.67.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig167.67.1 vs. uniprot
Match: D7G5U8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5U8_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 3.400e-10
Identity = 39/99 (39.39%), Postives = 59/99 (59.60%), Query Frame = 1 
Query:    1 LLNDRELLDQLQFRGDDMVEQGGHPAAVLRVFSEMLPNKRHVSRETTFRDRGKLRDINKLHS----ASTAVSGAAHGYPGPSHLAAHHAARVAASSTAP 285
            L+  R +LD   +RG+DM+ Q G P  V  +F++++PN R++SRETT RDR +L+ I+ +      A+T  +    GY G    AA  A+ +AA  TAP
Sbjct:  220 LMTWRSMLDDFVYRGNDMLLQFGVPEKVFGIFTDLMPNARNISRETTLRDRSRLKAIDTISGGWKLAATLATAHLSGYAGAYQQAASQASTIAAGITAP 318
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig167.67.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G5U8_ECTSI3.400e-1039.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig167contigP-littoralis_Contig167:338773..339221 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size450
Hectar predicted targeting categoryother localisation
Exons1
Cds size447
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789807.3606212-CDS-P-littoralis_Contig167:338774..3392211680789807.3606212-CDS-P-littoralis_Contig167:338774..339221Pylaiella littoralis U1_48CDSP-littoralis_Contig167 338775..339221 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig167.67.1prot_P-littoralis_Contig167.67.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig167 338775..339221 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig167.67.1

>prot_P-littoralis_Contig167.67.1 ID=prot_P-littoralis_Contig167.67.1|Name=mRNA_P-littoralis_Contig167.67.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=149bp
LLNDRELLDQLQFRGDDMVEQGGHPAAVLRVFSEMLPNKRHVSRETTFRD
RGKLRDINKLHSASTAVSGAAHGYPGPSHLAAHHAARVAASSTAPQPRSR
GSSVRGGGGRYSSAGTSVPLPFTPSVLPPTATARRPAHQRGSARGNGRG
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mRNA from alignment at P-littoralis_Contig167:338773..339221-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig167.67.1 ID=mRNA_P-littoralis_Contig167.67.1|Name=mRNA_P-littoralis_Contig167.67.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=449bp|location=Sequence derived from alignment at P-littoralis_Contig167:338773..339221- (Pylaiella littoralis U1_48)
CTCCTCAACGATCGTGAACTCCTGGACCAACTCCAGTTTCGTGGAGACGA
TATGGTTGAACAAGGAGGACACCCAGCCGCCGTTTTGCGCGTCTTCTCCG
AGATGCTTCCGAACAAACGTCATGTCTCGCGGGAGACCACCTTTCGGGAC
CGCGGAAAACTCCGCGACATCAACAAGCTCCACAGCGCGTCAACCGCAGT
GTCCGGAGCAGCGCACGGATATCCTGGCCCGTCCCATTTAGCCGCTCACC
ACGCTGCACGTGTGGCGGCGTCGTCCACCGCTCCACAGCCGCGGAGTAGG
GGTTCGAGCGTTCGCGGTGGGGGAGGCCGCTACTCTTCTGCAGGGACTTC
GGTCCCTCTGCCGTTTACTCCGTCTGTTTTGCCGCCTACCGCCACGGCCC
GACGCCCTGCCCATCAAAGAGGCTCTGCACGCGGTAACGGGCGGGGTGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig167:338773..339221-

>mRNA_P-littoralis_Contig167.67.1 ID=mRNA_P-littoralis_Contig167.67.1|Name=mRNA_P-littoralis_Contig167.67.1|organism=Pylaiella littoralis U1_48|type=CDS|length=447bp|location=Sequence derived from alignment at P-littoralis_Contig167:338773..339221- (Pylaiella littoralis U1_48)
CTCCTCAACGATCGTGAACTCCTGGACCAACTCCAGTTTCGTGGAGACGA
TATGGTTGAACAAGGAGGACACCCAGCCGCCGTTTTGCGCGTCTTCTCCG
AGATGCTTCCGAACAAACGTCATGTCTCGCGGGAGACCACCTTTCGGGAC
CGCGGAAAACTCCGCGACATCAACAAGCTCCACAGCGCGTCAACCGCAGT
GTCCGGAGCAGCGCACGGATATCCTGGCCCGTCCCATTTAGCCGCTCACC
ACGCTGCACGTGTGGCGGCGTCGTCCACCGCTCCACAGCCGCGGAGTAGG
GGTTCGAGCGTTCGCGGTGGGGGAGGCCGCTACTCTTCTGCAGGGACTTC
GGTCCCTCTGCCGTTTACTCCGTCTGTTTTGCCGCCTACCGCCACGGCCC
GACGCCCTGCCCATCAAAGAGGCTCTGCACGCGGTAACGGGCGGGGT
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