mRNA_P-littoralis_Contig167.31.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig167.31.1
Unique NamemRNA_P-littoralis_Contig167.31.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig167.31.1 vs. uniprot
Match: A0A6H5KY73_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY73_9PHAE)

HSP 1 Score: 427 bits (1098), Expect = 1.630e-137
Identity = 324/670 (48.36%), Postives = 384/670 (57.31%), Query Frame = 1 
Query:    1 DSPHGLLQEAGFRTQCELTPSSGGGAVCCKPFGTPCDSSEACCTGNCDPGYTRCDDAYGDDGHVDGGNNDGQDERDNXXGXHXGESSENGGERSDDGMFNGSQSDFGQVDDGQRYGGQNVYDGGSGYGQYNVXXXXXXXXXXXXXYVAPQLDD------GQDIDSMGHDTTSYGAAGDAAGGPTPASANAPHPTAAPLIHVGSGSTXXXXXXXXXXXXXXXXXXXXXFDSVAGRLPVIPSPSSAPHPTGAPLTHAGSGTNAPHNPPPPATTDPANSGATCVSDYFSGTIDTAASSESRLEAVAVDSQGNVFYTLSLGKGRGDTIRRAASPSSASSSGSDDD-------ALVYSGTGIILAMAVDADDNLVFTMEDALAVSGGVYLL---RMAPEGQEEAHVETTVSADDHGNNNVPEKGGPGSGSSTGSGFADELPSSTDGDRVAPAVALAAGLGPFLPGVAVCPITGDVYVTMGHTGVARLVKGTTGDLFSTKMEWSMKDMAFEQNGHTQAPLMVWDIAVNSHGIVYITTYTQGVVLKAILPQHGGVAHVRVAAGTWDSGVTASSGDGGPASSARMAYPKGVAIDGQDAVYIAEFQGEKIRQVSTNGIISTVAGSGSRAYEGDGGPASGAGLDMPNALAFVPGATGSKMAIADFGHSAVRVITPETVCP 1962
            D   GL  EAGFRTQCE TP SGG  VCCKPF TPCDS +ACC+GNCD  +TRCDDA     H     +  +D    XX X X     +   R   G     Q D          GGQ   DG S YG+   XXXXXXXXXX      P LD       G+        TTS  A       P+ A  +   P+  P     S                         D      P     +S   P    +   G G  +   P   ++T+ +++   C  DY SGTI+T ASSE+R+EAVA+DSQGNVFY++S G+G GD I  AAS S                  +VY GTGIILAMA+DADDNL+FTMEDA AVSGGV+LL   ++ P G         V A+D  +  V         S   S F  E+PS T G     AV+LAAGLGPFLPGVAVCP+TGDVYVT GHTG+ARLVKGT G  FS KMEW+M DMAF+    T+APLMVWDIAVNS GIVY TTY QGVVLK I P+ GGVA VR+  G WDSGV+ SSGDGG A SA +AYPKG+A+D  D +Y+AEFQGEKIR +ST+GIIST  G+GS A +        AGLD+PNA+AF+P   GS+MAIADFGH+AVRV+TP   CP
Sbjct:   87 DCTPGLYVEAGFRTQCEKTPFSGGDTVCCKPFATPCDSDKACCSGNCDVSHTRCDDAIVP-AHPTDEEHSHEDXXXXXXXXXXXXXXSSDTPRDSSGDILTDQRDA--------EGGQLYDDGESSYGEXXXXXXXXXXXXXSI--TGPGLDRYWGGYFGRYSFGQYDYTTSSEATPRTQDNPS-AEDSGTRPSEDPAGSPDSNQD----------------------DEKGTEFPPRHDETSGASPKDDGVHEGGEGEESTAAPLSTSSTEESST-TICQPDYASGTIETMASSETRVEAVAMDSQGNVFYSVSKGQGPGDAILWAASSSPXXXXXXXXXXXXXXXXTVVYVGTGIILAMAIDADDNLIFTMEDAPAVSGGVFLLSWRQINPGGG--------VGAEDSSDTGV---------SRYDSYF--EMPSET-GTAETSAVSLAAGLGPFLPGVAVCPVTGDVYVTRGHTGIARLVKGTDGS-FSQKMEWNMVDMAFKDGVKTRAPLMVWDIAVNSIGIVYFTTYVQGVVLKGIFPRQGGVAQVRLLGGKWDSGVSRSSGDGGKALSAVLAYPKGIAVDADDNIYVAEFQGEKIRNISTSGIISTCVGTGSTASK--------AGLDLPNAIAFMPSTPGSRMAIADFGHNAVRVVTPTWPCP 692
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BLAST of mRNA_P-littoralis_Contig167.31.1 vs. uniprot
Match: D7FIV4_ECTSI (NHL repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIV4_ECTSI)

HSP 1 Score: 354 bits (909), Expect = 3.810e-110
Identity = 275/664 (41.42%), Postives = 337/664 (50.75%), Query Frame = 1 
Query:    1 DSPHGLLQEAGFRTQCELTPSSGGGAVCCKPFGTPCDSSEACCTGNCDPGYTRCDDAY-------GDDGHVDGGNNDGQDERDNXXGXHXGESSENGGERSDDGMFNGSQSDFGQVDDGQRYGGQNVYDGGSGYGQYNVXXXXXXXXXXXXXYVAPQLDDGQDIDSMGHDTTSYGAAGDAAGGP---TPASANAPHPTAAPLIHVGSGSTXXXXXXXXXXXXXXXXXXXXXFDSVAGRLPVIPSPSSAPHPTGAPLTHAGSGTNAPHNPPPPATTDPANSGATCVSDYFSGTIDTAASSESRLEAVAVDSQGNVFYTLSLGKGRGDTIRRAASPSSASSSGSDDDALVYSGTGIILAMAVDADDNLVFTMEDALAVSGGVYLLRMAPEGQEEAHVETTVSADDHGNNNVPEKGGPGSGSSTGSGFADELPSSTDGDRVAPAVALAAGLGPFLPGVAVCPITGDVYVTMGHTGVARLVKGTTGDLFSTKMEWSMKDMAFEQNGHTQAPLMVWDIAVNSHGIVYITTYTQGVVLKAILPQHGGVAHVRVAAGTWDSGVTASSGDGGPASSARMAYPKGVAIDGQDAVYIAEFQGEKIRQVSTNGIISTVAGSGSRAYEGDGGPASGAGLDMPNALAFVPGATGSKMAIADFGHSAVRVITPETVCP 1962
            D   GL  EAGFRTQCE TP SGG  VCCKPF TPCDS +ACC+GNCD  + RCDDA         +  H D            XX X X          + D   + S        DG+  GGQ   DG + YG+Y+              Y   + DD   I   G D    G +G  + G    T +S + P     PL    SG+                       D      P     +S   P        G G  +   P   ++T+ +++   C  DY +GTI+T ASSE+R+EAVA+DSQ      ++ G G G                    A   SGTG+              +M D+                                                      E+ S T+    + AV+LAAGLGPFLPGVAVCP+TGDVYVT GHTG+ARLVKGT G  F  KMEW+M DMAF+    T+APLMVWDIAVNS GIVY TTY QGVVLK I P+ GG A VR+  G WDSGV+ SSGDGG A SA +AYPKG+A+D  D +Y+AEFQGEKIR +ST+GIIST  G+GS AYEGDGGPAS AGLD+PNA+AF+P   GS+MAIADFGH+AVRV+TP ++CP
Sbjct:   87 DCTPGLYVEAGFRTQCEKTPFSGGDTVCCKPFATPCDSDKACCSGNCDASHARCDDAVVPAHPTDEEHSHEDDFXXXXXXXXXXXXXXXXXXXXXXXXXXTSDTPKDSSGDIMADQQDGE--GGQLYDDGETSYGEYD-----------DVQYRHDKYDDR--ITGSGLDRYWDGYSGRYSFGQYDYTTSSEDTPRAQDNPLAE-DSGTRLYEDRVGSPDNNHD--------DEKGTEFPPPHDETSGASPKADGAHEGGEGEESTTGPLSTSSTEESST-TICQPDYAAGTIETMASSETRVEAVAMDSQ------INPGGGVG--------------------AEDSSGTGV--------------SMYDSFF----------------------------------------------------EMTSETETAETS-AVSLAAGLGPFLPGVAVCPVTGDVYVTRGHTGIARLVKGTDGS-FGQKMEWNMVDMAFKDGVKTRAPLMVWDIAVNSIGIVYFTTYVQGVVLKGIFPRQGGAAQVRLVGGKWDSGVSGSSGDGGKALSAVLAYPKGIAVDADDNIYVAEFQGEKIRNISTSGIISTCVGTGSTAYEGDGGPASEAGLDLPNAIAFMPSTPGSRMAIADFGHNAVRVVTPTSLCP 631
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BLAST of mRNA_P-littoralis_Contig167.31.1 vs. uniprot
Match: B5GTM2_STRCL (NHL repeat-containing protein n=3 Tax=Streptomyces clavuligerus TaxID=1901 RepID=B5GTM2_STRCL)

HSP 1 Score: 99.4 bits (246), Expect = 3.400e-18
Identity = 74/200 (37.00%), Postives = 115/200 (57.50%), Query Frame = 1 
Query: 1354 GDVYVTMGHTGVARLVKGTTGDLFSTKMEWSMKDMAFEQNGHTQAPL-MVWDIAVNSHGIVYITTYTQGVVLKAILPQHGGVAHVRVAAGTWDSGVTASSGDGGPASSARMAYPKGVAIDGQDAVYIAEFQGEKIRQVSTNGIISTVAGSGSRAYEGDGGPASGAGLDMPNALAFVPGATGSKMAIADFGHSAVRVITPE 1950
            G VYVT       R+ K T     ST +   +   + +    T A L   + +AV+S G++Y+T Y    + K  +   G ++ V   AGT   G T + GD GPA+SA++  P GVA+DG  AVYIA+    +IR+++ +G ISTVAG+G+  ++GDGGPA+ A L+ P  +  V  +TG+ + +AD+G+  +R IT +
Sbjct:  128 GAVYVTDAENH--RVRKITADGTISTVVGTGVAGFSGDGGPATAARLNRPFGVAVDSTGVLYVTEYNNNRIRK--VAADGTISTV---AGT---GATGNRGDDGPAASAQLNRPYGVAVDGAGAVYIADTDNHRIRKITADGTISTVAGTGTGGFDGDGGPATAARLNRP--MGVVIDSTGT-LYVADYGNHRIRKITTD 314
[Close]
BLAST of mRNA_P-littoralis_Contig167.31.1 vs. uniprot
Match: UPI001EF4CBB1 (protein kinase n=4 Tax=Frankia TaxID=1854 RepID=UPI001EF4CBB1)

HSP 1 Score: 97.4 bits (241), Expect = 2.730e-17
Identity = 59/159 (37.11%), Postives = 91/159 (57.23%), Query Frame = 1 
Query: 1480 TQAPLMVWDIAVNSHGIVYITTYTQGVVLKAILPQHGGVAHVRVAAGTWDSGVTASSGDGGPASSARMAYPKGVAIDGQDAVYIAEFQGEKIRQVSTNGIISTVAGSGSRAYEGDGGPASGAGLDMPNALAFVPGATGSKMAIADFGHSAVRVITPETV 1956
            T + L  +D+ ++  G +YIT +T   + K      G    V   AGT  SG T+   DGGPA+ A++  P    +D    +YI++   ++IR++ TNGII+T+AG+G+  + GDGGPAS A L+ PN LA     T   + +AD+G+  +R I+P  V
Sbjct:  473 TLSGLDAYDVTIDRAGALYITDWTSHQIHKI-----GKDGTVTTVAGTGTSGFTS---DGGPANQAQLDSPAATVLDSSGNIYISDSSNQRIRKIDTNGIITTIAGTGTAGFTGDGGPASAAQLNEPNGLALAADGT---LYVADYGNQRIRRISPSGV 620
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BLAST of mRNA_P-littoralis_Contig167.31.1 vs. uniprot
Match: A0A7C4VGQ2_9BACT (Uncharacterized protein n=1 Tax=Armatimonadetes bacterium TaxID=2033014 RepID=A0A7C4VGQ2_9BACT)

HSP 1 Score: 95.5 bits (236), Expect = 3.380e-17
Identity = 57/150 (38.00%), Postives = 89/150 (59.33%), Query Frame = 1 
Query: 1507 IAVNSHGIVYITTYTQGVVLKAILPQHGGVAHVRVAAGTWDSGVTASSGDGGPASSARMAYPKGVAIDGQDAVYIAEFQGEKIRQVSTNGIISTVAGSGSRAYEGDGGPASGAGLDMPNALAFVPGATGSKMAIADFGHSAVRVITPETV 1956
            IAV+S G +Y+        ++ I P       +   AGT + G    SGDGGPA++A ++ P G+A+D +  +YIA+F   +IR+VS +G+ISTVAGS S  Y+GDGGPA+ A +  P  +A +P     ++   DF  + +R ++PE +
Sbjct:  114 IAVSSDGSIYVAD-ADNHRIRRIAPD----GTITTTAGTGNQGF---SGDGGPAAAAELSNPTGIALDSKGNLYIADFGNSRIRKVSVDGVISTVAGSSSIGYDGDGGPATKAAITSPYGVAVLPS---GELIFTDFSANVIRAVSPEGI 252
[Close]
BLAST of mRNA_P-littoralis_Contig167.31.1 vs. uniprot
Match: A0A2S1Z8N4_9ACTN (Ricin B-type lectin domain-containing protein n=2 Tax=Streptomyces spongiicola TaxID=1690221 RepID=A0A2S1Z8N4_9ACTN)

HSP 1 Score: 94.0 bits (232), Expect = 1.660e-16
Identity = 63/148 (42.57%), Postives = 94/148 (63.51%), Query Frame = 1 
Query: 1507 IAVNSHGIVYITTYTQGVVLKAILPQHGGVAHVRVAAGTWDSGVTASSGDGGPASSARMAYPKGVAIDGQDAVYIAEFQGEKIRQVSTNGIISTVAGSGSRAYEGDGGPASGAGLDMPNALAFVPGATGSKMAIADFGHSAVRVITPE 1950
            IAV+  G +Y+  Y+  V     +   G ++ V   AGT   GV    GDGGPA+SA++ YP+G+A+DG DAVYIA+    ++R+++ +G ISTVAG+G+  + GDGGPA+ A L  P ++A V G TG  + IAD G+  +R +T +
Sbjct:   47 IAVDGTGSLYVADYSHRV---RKITSDGTISTV---AGT---GVAGFGGDGGPAASAQLNYPRGLAVDGADAVYIADGNNHRVRKITPDGTISTVAGTGAAGFGGDGGPATSARLHTPLSVA-VDG-TGD-LYIADHGNHRIRKVTAD 182
[Close]
BLAST of mRNA_P-littoralis_Contig167.31.1 vs. uniprot
Match: A0A2V5PPE7_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A2V5PPE7_9BACT)

HSP 1 Score: 91.3 bits (225), Expect = 1.770e-16
Identity = 52/109 (47.71%), Postives = 74/109 (67.89%), Query Frame = 1 
Query: 1615 AGTWDSGVTASSGDGGPASSARMAYPKGVAIDGQDAVYIAEFQGEKIRQVSTNGIISTVAGSGSRAYEGDGGPASGAGLDMPNALAFVPGATGSKMAIADFGHSAVRVI 1941
            AGT  SG    SGDGGPA SAR++YP  + +DG   +YIA++  ++IR+V+T+GIIST+AG+G   +EGDGGPA+ A L+ P  +A  P      + IAD G+S +R +
Sbjct:  123 AGTGTSGF---SGDGGPAVSARLSYPGNLVVDGGGNLYIADWGNDRIRKVNTDGIISTIAGNGKEGFEGDGGPATSASLNGPRGVAVDPA---GNVYIADRGNSRIRKV 225
[Close]
BLAST of mRNA_P-littoralis_Contig167.31.1 vs. uniprot
Match: A0A7C4HQS4_9BACT (Uncharacterized protein n=1 Tax=Kiritimatiellae bacterium TaxID=2212473 RepID=A0A7C4HQS4_9BACT)

HSP 1 Score: 95.1 bits (235), Expect = 1.830e-16
Identity = 57/116 (49.14%), Postives = 73/116 (62.93%), Query Frame = 1 
Query: 1603 VRVAAGTWDSGVTASSGDGGPASSARMAYPKGVAIDGQDAVYIAEFQGEKIRQVSTNGIISTVAGSGSRAYEGDGGPASGAGLDMPNALAFVPGATGSKMAIADFGHSAVRVITPE 1950
            +R  AGT   GV  SSGDGGPA+ A +  P  +A D +  +YIAE  G +IR+VST G+ISTVAG+G+R Y GDGGPA+ A LD P  +A     T   + IAD G+  VR +  E
Sbjct:  175 IRTIAGT---GVAGSSGDGGPATEASLLLPVDLAFDARGNLYIAEAHGHRIRKVSTEGVISTVAGTGARGYSGDGGPATEAALDTPQGIALDAAGT---LYIADTGNHRVRRVDAE 284
[Close]
BLAST of mRNA_P-littoralis_Contig167.31.1 vs. uniprot
Match: A0A831TKS5_9BACL (Uncharacterized protein n=1 Tax=Paenibacillaceae bacterium TaxID=2003592 RepID=A0A831TKS5_9BACL)

HSP 1 Score: 94.7 bits (234), Expect = 2.890e-16
Identity = 62/154 (40.26%), Postives = 92/154 (59.74%), Query Frame = 1 
Query: 1501 WDIAVNSHGIVYITTYTQGVVLKAILPQHGGVAHVRVAAGTWDSGVTASSGDGGPASSARMAYPKGVAIDGQDAVYIAEFQGEKIRQVSTNGIISTVAGSGSRAYEGDGGPASGAGLDMPNALAFVPGATGSKMAIADFGHSAVRVITPETVCP 1962
            +D+A++S G +YIT Y+   V K + P       ++  AGT  SG+   SGDGGPA  A++  P G+AID    VYIAE+ G +IR+++++G ISTVAG+GS  Y GDGGPA  A ++ P  +A     +   + I D  +  +R I+  T+ P
Sbjct: 1122 FDVALDSGGNLYITDYSNHRVRK-VTPD----GTIQTVAGTGSSGI---SGDGGPADQAKLNSPSGIAIDSSGNVYIAEYGGSRIRKIASDGTISTVAGTGSAGYSGDGGPAVEANVNRPLGVAVD---SSGNVYIPDTFNHRIRKISFGTLTP 1264
[Close]
BLAST of mRNA_P-littoralis_Contig167.31.1 vs. uniprot
Match: A0A364RCT9_9BACT (Uncharacterized protein n=1 Tax=Pontibacter arcticus TaxID=2080288 RepID=A0A364RCT9_9BACT)

HSP 1 Score: 94.4 bits (233), Expect = 3.760e-16
Identity = 60/148 (40.54%), Postives = 86/148 (58.11%), Query Frame = 1 
Query: 1501 WDIAVNSHGIVYITTYTQGVVLKAILPQHGGVAHVRVAAGTWDSGVTASSGDGGPASSARMAYPKGVAIDGQDAVYIAEFQGEKIRQVSTNGIISTVAGSGSRAYEGDGGPASGAGLDMPNALAFVPGATGSKMAIADFGHSAVRVIT 1944
            W +AV++ G + IT Y    + K        VA   + +    +G   S GDGGPA+SA    P G++I    A+YI+EF G +IR++STNG+ISTVAG+G+  + GDGGPA+ A +  P  LA V G     + IADF +  +R +T
Sbjct:  180 WSVAVDAAGNLLITYYQNNRIRK--------VATNGIISTFAGNGTAVSGGDGGPATSASFRNPTGISIGKSGAIYISEFGGHRIRKISTNGVISTVAGTGTAGFSGDGGPATSAAIASPYNLA-VDGE--ENIYIADFSNHRIRKVT 316
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig167.31.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KY73_9PHAE1.630e-13748.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FIV4_ECTSI3.810e-11041.42NHL repeat-containing protein n=1 Tax=Ectocarpus s... [more]
B5GTM2_STRCL3.400e-1837.00NHL repeat-containing protein n=3 Tax=Streptomyces... [more]
UPI001EF4CBB12.730e-1737.11protein kinase n=4 Tax=Frankia TaxID=1854 RepID=UP... [more]
A0A7C4VGQ2_9BACT3.380e-1738.00Uncharacterized protein n=1 Tax=Armatimonadetes ba... [more]
A0A2S1Z8N4_9ACTN1.660e-1642.57Ricin B-type lectin domain-containing protein n=2 ... [more]
A0A2V5PPE7_9BACT1.770e-1647.71Uncharacterized protein (Fragment) n=1 Tax=Verruco... [more]
A0A7C4HQS4_9BACT1.830e-1649.14Uncharacterized protein n=1 Tax=Kiritimatiellae ba... [more]
A0A831TKS5_9BACL2.890e-1640.26Uncharacterized protein n=1 Tax=Paenibacillaceae b... [more]
A0A364RCT9_9BACT3.760e-1640.54Uncharacterized protein n=1 Tax=Pontibacter arctic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig167contigP-littoralis_Contig167:158808..164010 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog443255.SCLAV_p0602
PFAMsCalx-beta,Cellulase,NHL,RicinB_lectin_2
Model size1965
Max annot lvl2|Bacteria
KEGG koko:K01179
KEGG ReactionR06200,R11307,R11308
KEGG Pathwayko00500,ko01100,map00500,map01100
Hectar predicted targeting categoryother localisation
Exons7
Evalue5.08e-19
EggNOG OGsCOG2730@1|root,COG3386@1|root,COG2730@2|Bacteria,COG3386@2|Bacteria
Ec32 ortholog descriptionNHL repeat-containing protein
Ec32 orthologEc-07_007620.1
EC3.2.1.4
Descriptiongluconolactonase activity
Cds size1965
COG categoryG
CAZyGH5,GH9
BRITEko00000,ko00001,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig167.31.1prot_P-littoralis_Contig167.31.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig167 158808..164010 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789806.5322466-CDS-P-littoralis_Contig167:158807..1589271680789806.5322466-CDS-P-littoralis_Contig167:158807..158927Pylaiella littoralis U1_48CDSP-littoralis_Contig167 158808..158927 +
1680789806.5480328-CDS-P-littoralis_Contig167:159585..1602701680789806.5480328-CDS-P-littoralis_Contig167:159585..160270Pylaiella littoralis U1_48CDSP-littoralis_Contig167 159586..160270 +
1680789806.5597584-CDS-P-littoralis_Contig167:160615..1607131680789806.5597584-CDS-P-littoralis_Contig167:160615..160713Pylaiella littoralis U1_48CDSP-littoralis_Contig167 160616..160713 +
1680789806.57062-CDS-P-littoralis_Contig167:161028..1615591680789806.57062-CDS-P-littoralis_Contig167:161028..161559Pylaiella littoralis U1_48CDSP-littoralis_Contig167 161029..161559 +
1680789806.5807805-CDS-P-littoralis_Contig167:162122..1622421680789806.5807805-CDS-P-littoralis_Contig167:162122..162242Pylaiella littoralis U1_48CDSP-littoralis_Contig167 162123..162242 +
1680789806.5951877-CDS-P-littoralis_Contig167:163093..1633481680789806.5951877-CDS-P-littoralis_Contig167:163093..163348Pylaiella littoralis U1_48CDSP-littoralis_Contig167 163094..163348 +
1680789806.6062298-CDS-P-littoralis_Contig167:163854..1640101680789806.6062298-CDS-P-littoralis_Contig167:163854..164010Pylaiella littoralis U1_48CDSP-littoralis_Contig167 163855..164010 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig167.31.1

>prot_P-littoralis_Contig167.31.1 ID=prot_P-littoralis_Contig167.31.1|Name=mRNA_P-littoralis_Contig167.31.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=655bp
DSPHGLLQEAGFRTQCELTPSSGGGAVCCKPFGTPCDSSEACCTGNCDPG
YTRCDDAYGDDGHVDGGNNDGQDERDNDDGQHDGESSENGGERSDDGMFN
GSQSDFGQVDDGQRYGGQNVYDGGSGYGQYNVGGKTGDGRNGGGQYVAPQ
LDDGQDIDSMGHDTTSYGAAGDAAGGPTPASANAPHPTAAPLIHVGSGST
ASDSTPFPTTDPAISDGSGSTFDSVAGRLPVIPSPSSAPHPTGAPLTHAG
SGTNAPHNPPPPATTDPANSGATCVSDYFSGTIDTAASSESRLEAVAVDS
QGNVFYTLSLGKGRGDTIRRAASPSSASSSGSDDDALVYSGTGIILAMAV
DADDNLVFTMEDALAVSGGVYLLRMAPEGQEEAHVETTVSADDHGNNNVP
EKGGPGSGSSTGSGFADELPSSTDGDRVAPAVALAAGLGPFLPGVAVCPI
TGDVYVTMGHTGVARLVKGTTGDLFSTKMEWSMKDMAFEQNGHTQAPLMV
WDIAVNSHGIVYITTYTQGVVLKAILPQHGGVAHVRVAAGTWDSGVTASS
GDGGPASSARMAYPKGVAIDGQDAVYIAEFQGEKIRQVSTNGIISTVAGS
GSRAYEGDGGPASGAGLDMPNALAFVPGATGSKMAIADFGHSAVRVITPE
TVCP*
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mRNA from alignment at P-littoralis_Contig167:158808..164010+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig167.31.1 ID=mRNA_P-littoralis_Contig167.31.1|Name=mRNA_P-littoralis_Contig167.31.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5203bp|location=Sequence derived from alignment at P-littoralis_Contig167:158808..164010+ (Pylaiella littoralis U1_48)
GACTCCCCGCACGGATTACTGCAGGAAGCCGGTTTCCGGACGCAGTGTGA
GCTGACTCCATCCTCCGGTGGAGGCGCTGTTTGCTGCAAGCCTTTTGGAA
CACCGTGCGATTCAAGCGAAGTAAGGCGTGGCTAAGGTCCTGCGTATATA
TTGCTGTCGGCGGGAAATAAGTGAAAGTTCCTGGAGCATGTACCAACCAC
GGAGTGGATATATACCGTTCCTATTGTTGTTGTTGTTGTTGTTGTTGTTG
TTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTT
GTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGGTGGTGCTGTTGT
TGTTGACGACTCCAACACCACGCGGAAAGATTAATCGTATTACTCGTAGC
CGGCTGTGTTGCTGTTCCTGCGCTTGCACCCACAATAACGCACCAGCTTA
GCTGGAGCTCGTATGTGTGTACACACGAGCATTGTGTGTTATTTGCGAAC
CTTTGGCCTGCCTGGTCTACAATCTCTCTGGCAACAAATAATGACCAGAG
GTGAATCAGTTTCTCTGACTCGGCTAAACTCCCTGTAGGTGCGCCGTGAG
ATGCGCATAAAATAAAAATACCATATGTGGTTGCAAGTATTACATCGAAG
TGACACACGCGTAGAAGCCCCCCCCCCCCCCCCCTACCCTATCATAACTT
TTCTATTCCAACTCACTTTGGCTGACCAAAACCAAACTAATGAGAAACAC
GTTGTTGGCCCTCTCCTGCCTTCCTCAGGCGTGTTGCACGGGCAACTGCG
ACCCTGGGTACACCCGGTGCGACGACGCGTACGGCGATGACGGCCACGTC
GACGGGGGCAATAATGATGGCCAGGACGAACGGGACAATGATGATGGCCA
GCACGATGGTGAGAGCAGCGAGAACGGCGGCGAGCGGAGCGATGACGGCA
TGTTCAACGGCAGCCAGTCTGATTTCGGCCAGGTCGATGATGGCCAGCGC
TATGGTGGCCAAAATGTTTATGATGGCGGGTCTGGTTACGGTCAATATAA
TGTCGGGGGCAAAACCGGGGACGGCCGGAACGGCGGCGGTCAGTACGTCG
CACCTCAGCTCGACGACGGTCAGGATATTGATAGCATGGGGCACGACACC
ACCAGCTACGGGGCGGCCGGTGATGCCGCCGGTGGTCCAACCCCCGCTTC
AGCGAATGCTCCCCACCCGACGGCTGCCCCCCTGATACATGTGGGATCAG
GCTCGACCGCTTCCGACTCTACCCCATTCCCGACAACTGACCCGGCCATT
TCGGACGGCAGTGGCAGTACCTTCGATTCCGTTGCTGGGCGTCTCCCGGT
GATACCCAGTCCGTCGAGTGCTCCGCACCCGACGGGTGCCCCCCTGACAC
ATGCGGGTTCAGGCACGAATGCTCCGCATAACCCCCCGCCCCCGGCGACA
ACTGACCCGGCCAGTTCGGGCGGCAGCGGCACTACCTCCGACTCCGGTAC
CGGACGTCGCCCGATGAAAATCGATCCGGACGGACCGTACGCCCAAGGGA
GAAGCTACAGCAACCCGGACGACGACTACTACCACGGGTACGACGGGACG
GAGGAGGAGGGCGGCTTGCAAGGGAACGGAGACGTGGAACCGCCACAACC
GTCTCCGCCGCAACCGCCACCGCCCACTACCGGCAAGGGTGGCGGCCGCA
ACGGAAACTCGTCTCCATCACCGGCGGCACCAACACTCCTGCCGCCCAAC
AACGGCGACCGTGTCGAGCCTCCCGCGCCGCGTACCCCGGCGAATAAGGA
CGAGGGAGACTCCGGCGCGACCTGTGTATCGGACTACTTTTCAGGGACGA
TCGATACAGCCGCGTCGTCAGAATCGAGGCTCGAGGCCGTTGCGGTAGAC
TCGCAGGTAAGCTCGTAGAAGGGCGGATGCGCTGCCCGTCGTCGTAGGGG
CCGAGGAGAAACATCAAGGTGACCAACGCCAAATCTCGGTGACAGCGTTG
GAAGAGAGAGAGGGGGGGTGCTCTGTTTCCTATTCTACTGGATTTTGAAA
GGAAAGACCGTTGTTCTTTTTGCACAAATTCTATCTTTGTGGAGCACTAT
TACCGCACGTGTGTTGGTCGATAAATGCTCCTCGACAACAACCCCTACTA
CACACAGAGAGATAGTGGGGGGTTCCAAACATGTCTGTTTCTCCATCTCG
GTCCAAACAAACGCCAAGTAGGGAAATGTTTTCTACACGCTGAGCTTAGG
CAAAGGAAGGGGGGATACAATCCGGAGGGCAGCGTCTCCCTCCTCCGCCT
CTAGCTCTGGTTCCGACGACGACGCCCTCGTCTACAGCGGCACCGGAATC
ATCCTCGCCATGGCCGTTGACGCCGACGACAACCTGGTCTTCACCATGGA
AGACGCGCTGGCCGTCAGCGGCGGCGTGTACCTGCTGCGGATGGCGCCGG
AGGGGCAAGAGGAAGCACATGTCGAGACAACGGTTTCGGCCGACGACCAC
GGCAATAACAACGTCCCCGAAAAAGGCGGCCCCGGCAGTGGAAGCTCAAC
CGGCAGCGGTTTCGCCGACGAACTGCCCTCCTCGACTGATGGGGACCGTG
TCGCCCCGGCCGTAGCTTTGGCGGCTGGTCTTGGTCCGTTCTTGCCAGGC
GTGGCTGTGTGTCCGATCACGGGGGACGTGTACGTCACAATGGGCCATAC
CGGAGTAGCGCGGTTGGTGAAAGGAACCACCGGCGACCTTTTCAGCACCA
AGGTTCGATTCCACAAAGATCGTAGAATACGACCGCACATGTCCATATGA
TACATAGCACCTAGCAACACGTTATAGATATCCTCCTCCTCGGGAGGAAA
TGATGCGCTGCCCCACGCCAGTGCGACGTGGGTGGACACGGTGACATGTG
CATGTTTTGAAAAGCCTTCCTATTGAGGTCAGTTTCATGAAAAACACCCT
TTCCATCAGCCTTTGGAGGTCGGCGGGCCGAAACGTACTTGTCGGGGACT
TGGGCGGAATAGAGGCGCCTGCATGTATCGGGTAAGGTTCATCATGCCAA
TGTAAGATACGCGGAGTATCATAGTGATGGCACATGCTCCCCCGACCTAT
CGATACCGGAGTAGACGCTTGCCTGAACCCCAGCGACAGCGTCAAAAGCA
ACGTCCAGTTCAAATTAGAAAGCGTCATGATGAGGAATTGGTCGGAAACG
CGACAATGGTCGAGAAACATTGAAAATTATGTAATTGTTTTACCGCGGAT
CTTCCGCTTCGTGAATGTTTCCTCTTTTTATTGCGTCTGACCGACCTTTG
TTTTTTACCCTGTAGATGGAGTGGAGCATGAAGGACATGGCGTTCGAGCA
GAACGGACACACACAAGCTCCGTTGATGGTTTGGGATATCGCCGTCAACA
GCCATGGCATCGTGTACATCACGACGTACACACAGGTACATCTTCCCACC
ATCGATGTTGGTGCTATGACATCGATCAAAACGATGATGATGATGATGAT
GATGATGATGACGAAGCTTGATGGATGTATCCGTGCTTTTGAAGCCAGAT
TCCATACAAACAGTGATATTATTGTAGGTTGCAGAACACTCTCTCGCGCA
ACCCTCGGAGCTGCCTCACGCGAACCTCCCCCAAACATTGCAACACTGAA
GCGTGTCATGAAAAAATGCAAAAATGCGATATGGATGCGAAAAGACGTGC
TGCACTGTGTTGCAGAAAGGAGCGCCGATCGTACAAGACATTGCTGGCAA
GGAGGGGAGAGTTCAGGCCAGGCACATACCAAAACGGCTGTGCTGCCGCC
TGATAGATACAATCATAAACTGTGCAACCTGTGTTGCCTCGTTCGGAAGG
TTGTCGGAGCATATAATGAACGACGTTTATGCAGCAGTTTGTATACCTGA
TACAAATCTCCAGGTAGTACTAGTAAGGCTACCGGCCCACCGCATCCATA
TTTGATACTTTGAAGTACTTTTGTGTGCACCTTGCCATTCCTCCAACACC
AAAACGGCGGAAGCGACATCGTTTTATCCGTCGAGCTCTGTGTGGTCTGG
CAAAGGTTGGTGTGTGTGCGTGTGTGTGTCCGGTGAACAGAGCATCTCGC
ACCCCCACCGAACTGATAAACACAACAAAACAAAACGGGCACATGGTAGG
TTGAGCCCGCCGCCTACAATAAATAGACGAGATGCGCTATTTACTCGACG
TCGTGCCGTCGTCGCCGCCGCTTCTCCCGACGATGTCCAAATCCCAACCA
AGCTGATCCACGTGCGCGTGCATTCATTCGTAAAAGGGTGTCGTCCTCAA
AGCAATACTGCCCCAGCATGGCGGAGTCGCTCACGTCCGTGTCGCCGCCG
GCACGTGGGACTCCGGCGTCACGGCCTCCTCGGGGGACGGAGGGCCGGCC
TCGTCGGCGAGGATGGCCTACCCCAAGGGCGTCGCCATAGACGGCCAAGA
CGCCGTGTACATCGCCGAGTTTCAGGGCGAGAAGATCCGGCAGGTGTCCA
CCAACGGCATCATATCCACGGTCGCCGGCTCGGGGAGCAGGGTGAGTCTC
CACGGCGTGGTAGTGACGAAACGCACGCTCTGGATGCGCAACAAAGTTTG
CCGTAACGCGCACGAGCGATACGTGTGTTTTGTCGTGCGTCTCTATTCTT
CTTCTTCGGATGCTCGCCTTTCTTTGTGTCTCGCTCCGGATATTGATCGC
GGTCGCACGTTTTGTGTTGTTGTTCTTGTTTGCGTTGTTTCCGGACAGCT
TTGTGCCCGCGGAAGAAACCCATGTACCTACACACACCCACGTGCGCGCG
TCCGGACCCACACGGCGTTTCTACGCGTGGCGCGGTGTTTTGGATCATTT
TTTTGCGTCAACCCCTCTCCCGTCTCCCCTTGAAACGTTGTTACCAGTCA
TAAACCAACCTACCATGGTATGATATTGAATCCCCCCTTTTGCCCCGTCC
CCTGCCCCAACCAATAATCTCTTTTGGTCCCTGCATTTTTGGCTTCCGTA
AAAATTCACTCTGGGTTGGGGTTCATGCGCGGATTTTCCCGTGCAAGGCG
TACGAGGGCGACGGTGGTCCCGCATCGGGGGCCGGGCTGGACATGCCGAA
TGCTCTGGCGTTTGTCCCTGGCGCAACCGGGAGCAAGATGGCCATCGCGG
ACTTCGGACACAGCGCCGTACGTGTCATTACTCCGGAAACGGTGTGTCCC
TAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig167:158808..164010+

>mRNA_P-littoralis_Contig167.31.1 ID=mRNA_P-littoralis_Contig167.31.1|Name=mRNA_P-littoralis_Contig167.31.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1965bp|location=Sequence derived from alignment at P-littoralis_Contig167:158808..164010+ (Pylaiella littoralis U1_48)
GACTCCCCGCACGGATTACTGCAGGAAGCCGGTTTCCGGACGCAGTGTGA
GCTGACTCCATCCTCCGGTGGAGGCGCTGTTTGCTGCAAGCCTTTTGGAA
CACCGTGCGATTCAAGCGAAGCGTGTTGCACGGGCAACTGCGACCCTGGG
TACACCCGGTGCGACGACGCGTACGGCGATGACGGCCACGTCGACGGGGG
CAATAATGATGGCCAGGACGAACGGGACAATGATGATGGCCAGCACGATG
GTGAGAGCAGCGAGAACGGCGGCGAGCGGAGCGATGACGGCATGTTCAAC
GGCAGCCAGTCTGATTTCGGCCAGGTCGATGATGGCCAGCGCTATGGTGG
CCAAAATGTTTATGATGGCGGGTCTGGTTACGGTCAATATAATGTCGGGG
GCAAAACCGGGGACGGCCGGAACGGCGGCGGTCAGTACGTCGCACCTCAG
CTCGACGACGGTCAGGATATTGATAGCATGGGGCACGACACCACCAGCTA
CGGGGCGGCCGGTGATGCCGCCGGTGGTCCAACCCCCGCTTCAGCGAATG
CTCCCCACCCGACGGCTGCCCCCCTGATACATGTGGGATCAGGCTCGACC
GCTTCCGACTCTACCCCATTCCCGACAACTGACCCGGCCATTTCGGACGG
CAGTGGCAGTACCTTCGATTCCGTTGCTGGGCGTCTCCCGGTGATACCCA
GTCCGTCGAGTGCTCCGCACCCGACGGGTGCCCCCCTGACACATGCGGGT
TCAGGCACGAATGCTCCGCATAACCCCCCGCCCCCGGCGACAACTGACCC
GGCCAACTCCGGCGCGACCTGTGTATCGGACTACTTTTCAGGGACGATCG
ATACAGCCGCGTCGTCAGAATCGAGGCTCGAGGCCGTTGCGGTAGACTCG
CAGGGAAATGTTTTCTACACGCTGAGCTTAGGCAAAGGAAGGGGGGATAC
AATCCGGAGGGCAGCGTCTCCCTCCTCCGCCTCTAGCTCTGGTTCCGACG
ACGACGCCCTCGTCTACAGCGGCACCGGAATCATCCTCGCCATGGCCGTT
GACGCCGACGACAACCTGGTCTTCACCATGGAAGACGCGCTGGCCGTCAG
CGGCGGCGTGTACCTGCTGCGGATGGCGCCGGAGGGGCAAGAGGAAGCAC
ATGTCGAGACAACGGTTTCGGCCGACGACCACGGCAATAACAACGTCCCC
GAAAAAGGCGGCCCCGGCAGTGGAAGCTCAACCGGCAGCGGTTTCGCCGA
CGAACTGCCCTCCTCGACTGATGGGGACCGTGTCGCCCCGGCCGTAGCTT
TGGCGGCTGGTCTTGGTCCGTTCTTGCCAGGCGTGGCTGTGTGTCCGATC
ACGGGGGACGTGTACGTCACAATGGGCCATACCGGAGTAGCGCGGTTGGT
GAAAGGAACCACCGGCGACCTTTTCAGCACCAAGATGGAGTGGAGCATGA
AGGACATGGCGTTCGAGCAGAACGGACACACACAAGCTCCGTTGATGGTT
TGGGATATCGCCGTCAACAGCCATGGCATCGTGTACATCACGACGTACAC
ACAGGGTGTCGTCCTCAAAGCAATACTGCCCCAGCATGGCGGAGTCGCTC
ACGTCCGTGTCGCCGCCGGCACGTGGGACTCCGGCGTCACGGCCTCCTCG
GGGGACGGAGGGCCGGCCTCGTCGGCGAGGATGGCCTACCCCAAGGGCGT
CGCCATAGACGGCCAAGACGCCGTGTACATCGCCGAGTTTCAGGGCGAGA
AGATCCGGCAGGTGTCCACCAACGGCATCATATCCACGGTCGCCGGCTCG
GGGAGCAGGGCGTACGAGGGCGACGGTGGTCCCGCATCGGGGGCCGGGCT
GGACATGCCGAATGCTCTGGCGTTTGTCCCTGGCGCAACCGGGAGCAAGA
TGGCCATCGCGGACTTCGGACACAGCGCCGTACGTGTCATTACTCCGGAA
ACGGTGTGTCCCTAA
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