mRNA_P-littoralis_Contig167.12.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig167.12.1
Unique NamemRNA_P-littoralis_Contig167.12.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig167.12.1 vs. uniprot
Match: A0A6H5L232_9PHAE (TLDc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L232_9PHAE)

HSP 1 Score: 229 bits (583), Expect = 8.350e-68
Identity = 144/287 (50.17%), Postives = 176/287 (61.32%), Query Frame = 1
Query:   43 MFRVKSNDKETFSATLTASARETNASLTQRRKEMDRAWYGIDAGWQRLQQCMTAIGITNS-SPQEGMVRLNVGGLHVNVDRSVLEGKYDELSTNWTLGNLFEGK*DKRLPRDSDGRFVLNESPSFVKHLVHSLFVHSAAARGSNEFGGGVVGGLTVEEGRPYLGYVGRSLGVGW---LGSESVKGGSTILRSSESGPLTSVLQGWCSGNPSRLGLVYRASRDDWSPKAFLDAKRNRSPCTITLIKIGDGDDSSASIVGGYSGVPVGR---GHPS-----RAFLFMLK 867
            M R   N+ +TFSAT+TA ++E  A+L QRRK M +AW  ++ GW  L QC    GIT     QEGM+RLNVGG H+   R VL+GK  E S  W LGNLFE   D RLPRDSDGR VL++SP+ VK L+HSL   S AA GS   G      L  +E   YL +V R+LG+     L    V GG+TIL   E G LT+ LQGWC GNP+ + L+YRASRDDWSP  F  +  N SP TITL+++G    +SASIVGG+S VP      G  S      AF+FMLK
Sbjct:    1 MSRCHMNEDDTFSATVTAYSKEMEAALGQRRKGMSQAWEDVERGWHELNQCRIDAGITKPFGSQEGMLRLNVGGSHLRFRRCVLDGK-KEPSATWALGNLFESVWDDRLPRDSDGRIVLDKSPACVKDLIHSLIESSGAAPGSLPRGET----LAPDE-MAYLPHVARALGLSAYIPLQGMEVVGGTTILSHCEVGELTATLQGWCPGNPNTMQLLYRASRDDWSPYPFHASCGNNSPNTITLLRVG----ASASIVGGFSSVPWSPHAYGGDSVMSSLGAFIFMLK 277          
BLAST of mRNA_P-littoralis_Contig167.12.1 vs. uniprot
Match: D7FIY4_ECTSI (TLDc domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIY4_ECTSI)

HSP 1 Score: 216 bits (549), Expect = 1.290e-64
Identity = 139/304 (45.72%), Postives = 178/304 (58.55%), Query Frame = 1
Query:    1 LCRRVECDNGHQAVMFRVKSNDKETFSATLTASARETNASLTQRRKEMDRAWYGIDAGWQRLQQCMTAIGITNSSP-QEGMVRLNVGGLHVNVDRSVLEGKYDELSTNWTLGNLFEGK*DKRLPRDSDGRFVLNESPSFVKHLVHSLFVHSAAARGSNEFGGGVV--GGLTVEEGRPYLGYVGRSLGVGW----LGSESVKGGSTILRSSESGPLTSVLQGWCSGNPSRLGLVYRASRDDWSPKAFLDAKRNRSPCTITLIKI-GDGDDSSASIVGGYSGVP-------VGRGHPSRAFLFMLK 867
            L R  E +NGH   M R +SN+++TFS  L ASARETN  L+QRRK MD+AW  ID GWQ LQ+ M  IGIT     +EG+V+LNVGG  +   RSV EGK    ++   LG+L E + DKR+PRDSDGR VL+ESP+ VK L H L    + A+G+      VV       +E    L Y    LG+ W    +G  S+ GG+TI    E+  LT+V+QGWC G+P RL L+YRASRD W+  AF     +  P T+T  ++ G G   + SIVGG+S VP        G      AFLFMLK
Sbjct:   53 LSRYRESENGHN--MLRFQSNEQKTFSEILEASARETNDILSQRRKVMDQAWADIDEGWQALQEHMAKIGITKPLDLKEGLVKLNVGGSLLAFRRSVFEGKGKGATS--ALGSLCEAEWDKRIPRDSDGRIVLDESPTCVKRLFHDLLTPPSLAKGT------VVREDNFASDETPDLLRYTAHVLGLSWHLAPIGM-SITGGTTIFEPHEASRLTAVIQGWCPGHPGRLELLYRASRDGWNSAAFQATCGDDRPSTVTFFRVKGQGTGGTDSIVGGFSSVPWTPPGGSTGYTASPGAFLFMLK 345          
BLAST of mRNA_P-littoralis_Contig167.12.1 vs. uniprot
Match: D7G2H5_ECTSI (TLDc domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2H5_ECTSI)

HSP 1 Score: 214 bits (545), Expect = 4.970e-62
Identity = 135/264 (51.14%), Postives = 162/264 (61.36%), Query Frame = 1
Query:  115 ASLTQRRKEMDRAWYGIDAGWQRLQQCMTAIGITN-SSPQEGMVRLNVGGLHVNVDRSVLEGKYDELSTNWTLGNLFEGK*DKRLPRDSDGRFVLNESPSFVKHLVHSLFVHSAAARGSNEFGGGVVGGLTVEEGRPYLGYVGRSLGVGWL----GSESVKGGSTILRSSESGPLTSVLQGWCSGNPSRLGLVYRASRDDWSPKAFLDAKRNRSPCTITLIKIGDGDDSSASIVGGYSGVPVGR---GHPS-----RAFLFMLK 867
            A L+QRRKEM +AW  +D GW  L QC    GIT  S  Q+GM+RLNVGG H+N  R +L G+  E S  W LGNLFE   D RLPRDSDGR VL+ESP+ VKHL+HSL   S AA GS   G      L ++E   YL YV R+LG+       G E V GG+T L   E G LT+ LQGWC GNP+ + L+YRASRD WSP  F  +  N SP TITL+++G    +S SIVGG+S VP      G  S      AF+FMLK
Sbjct:    3 AVLSQRRKEMSQAWEDVDRGWHELNQCRIDAGITKPSGSQQGMLRLNVGGSHLNFRRCILAGR-KEPSATWALGNLFESVWDDRLPRDSDGRIVLDESPACVKHLIHSLIESSGAAPGSLPRGDT----LALDE-MVYLPYVARALGLSAYIPRQGMEVV-GGTTSLSHCEVGELTATLQGWCPGNPNTMRLLYRASRDGWSPYPFHASCGNNSPNTITLLRVG----ASQSIVGGFSSVPWSPHAYGGDSIMSSLGAFIFMLK 255          
BLAST of mRNA_P-littoralis_Contig167.12.1 vs. uniprot
Match: A0A6H5LAP0_9PHAE (TLDc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAP0_9PHAE)

HSP 1 Score: 208 bits (530), Expect = 1.290e-59
Identity = 128/292 (43.84%), Postives = 173/292 (59.25%), Query Frame = 1
Query:   43 MFRVKSNDKETFSATLTASARETNASLTQRRKEMDRAWYGIDAGWQRLQQCMTAIGITNS-SPQEGMVRLNVGGLHVNVDRSVLEGKYDELSTNWTLGNLFEGK*DKRLPRDSDGRFVLNESPSFVKHLVHSLFVHSAAARGSNEFGGGVVGGLTVEEGRPYLGYVGRSLGV-GWLG--SESVKGGSTILRSSESGPLTSVLQGWCSGNPSRLGLVYRASRDDWSPKAFLDAKRNRSPCTITLIKI-GDGDDSSASIVGGYSGVPVG------------RGHPSRAFLFMLK 867
            M R +SN+K+TFSATL  S+R   A+L+QRR EMD  W  ID GWQ L++ MT +GIT     +EG+V+LNVGGL +   RSVL+ +  +    W LGNLFE + DKR+PRDSDG  VL+ESP+ VK LVH L   S++++ +     G  G     E    L Y    LG+ G L     S++GG+TI    E+  LT+V+Q WC G+P  L L+YRASRD W+   F    +  SP T+TL+++ G     + SI+GG+S VP              RG P  AF+F+LK
Sbjct:    1 MLRCQSNEKKTFSATLAVSSRAMEAALSQRRLEMDHEWDSIDEGWQTLRERMTEVGITKPLESKEGIVKLNVGGLLLAFRRSVLDSEGKQQPPTWALGNLFEAEWDKRVPRDSDGHIVLDESPTCVKQLVHRLLTASSSSKATV----GRAGDFARNEDPALLHYTAGVLGLSGCLAPVGMSIQGGTTIFEPHETSKLTAVVQDWCPGHPGGLELLYRASRDGWNGATFNARCKGDSPSTVTLLRVKGCETGGTDSIIGGFSSVPWSPAIQNYSYGYYLRGSPG-AFVFILK 287          
BLAST of mRNA_P-littoralis_Contig167.12.1 vs. uniprot
Match: D7FIV0_ECTSI (TLDc domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIV0_ECTSI)

HSP 1 Score: 159 bits (401), Expect = 3.140e-41
Identity = 107/249 (42.97%), Postives = 145/249 (58.23%), Query Frame = 1
Query:  142 MDRAWYGIDAGWQRLQQCMTAIGITN-SSPQEGMVRLNVGGLHVNVDRSVLEGKYDELSTNWTLGNLFEG-K*DKRLPRDSDGRFVLNESPSFVKHLVHSLFVHSAAARGSNEFGGGVVGGLTVEEGRPYLGYVGRSLGVGWLGSESVKGGSTILRSSESGPLTSVLQGWCSGNPSRLGLVYRASRDDWSPKAFLDAKRNRSPCTITLIKIGDGD-DSSASIVGGYSGVPVGRGHPSR----AFLFMLK 867
            M + W  +D+GW+ L+  M   G++  SS Q  +VRLNVGGL VN+ RSVL    +  S+ WTLG+LFEG   DKRLPR  DGR VL+ESP  V+ L+      S+   G++ F          ++ +PY+G V  +LG+  LG  +V GGST L   E+  LT+ + GWC G P  L L+YRASRD WS  A      + SP TI+L ++   D ++S SIVGG+S VP     P      +FLF+LK
Sbjct:    1 MKKEWDKLDSGWEALESKMNETGMSMVSSIQPSIVRLNVGGLDVNIARSVLRKAGESSSSTWTLGDLFEGCVWDKRLPRCEDGRIVLDESPVCVEELLCDA---SSKRPGNSNF---------PDDEKPYIGGVASALGLD-LGM-TVPGGSTTLPHDEAERLTATILGWCPGRPEGLELLYRASRDGWSGDALHARCGDDSPSTISLFRVKTQDANTSDSIVGGFSSVPWTALPPENRGLDSFLFILK 235          
BLAST of mRNA_P-littoralis_Contig167.12.1 vs. uniprot
Match: D7FIU9_ECTSI (TLDc domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIU9_ECTSI)

HSP 1 Score: 148 bits (373), Expect = 7.650e-40
Identity = 105/251 (41.83%), Postives = 144/251 (57.37%), Query Frame = 1
Query:  142 MDRAWYGIDAGWQRLQQCMTAIGITN-SSPQEGMVRLNVGGLHVNVDRSVLEGKYDELSTNWTLGNLFEG-K*DKRLPRDSDGRFVLNESPSFVKHLVHSLFVHSAAARGSNEFGGGVVGGLTVEEGRPYLGYVGRSLGVGWLGSESVKGGSTILRSSESGPLTSVLQGWCSGNPSRLGLVYRASRDDWSPKAFLDAKRNRSPCTITLIKIG-DGDDSSASIVGGYSGV------PVGRG-HPSRAFLFML 864
            M + W  +D+GW+ L+  ++  G++  SS     VRLNVGGL VN+ RSV     +  S++WTLG+LFEG   DKRLPR  DGR VL+ S   V+ L   L   +++ R  N         L V+E +PY+G V  +LG+  +G + V GGSTIL+  E+  LT+   GWC G P  L L+YRASRD WS  AF     + SP T +L +I  + ++ S S+VGG+S V         RG H   +FLFML
Sbjct:    1 MKKEWDTLDSGWEALESKISQAGMSMVSSIPPSFVRLNVGGLDVNIARSVFRKTGEASSSSWTLGDLFEGCVWDKRLPRSEDGRIVLDASAVCVEEL---LCDGASSKRSGNN-------NLPVDE-KPYIGGVASALGL-CVGMK-VTGGSTILQLHEAERLTATFLGWCPGRPEGLELLYRASRDGWSGAAFHARCGDDSPFTTSLFRIKVESNEDSYSVVGGFSSVLWTTRSTDDRGVHSPGSFLFML 238          
BLAST of mRNA_P-littoralis_Contig167.12.1 vs. uniprot
Match: D7G141_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G141_ECTSI)

HSP 1 Score: 149 bits (376), Expect = 4.700e-37
Identity = 101/297 (34.01%), Postives = 147/297 (49.49%), Query Frame = 1
Query:   43 MFRVKSNDKETFSATLTASARETNASLTQRRKEMDRAWYGIDAGWQRLQQCMTAIGITNSSPQEGMVRLNVGGLHVNVDRSVLEGKYDELSTNWTLGNLFEGK*DKRLPRDSDGRFVLNESPSFVKHLVHSLFVHSAAARGSN-------EFGGGVVGGLTVEEGRPYLGYVGRSLGVGWL-------GSESVKGGSTILRSSESGPLTSVLQGWCSGNPSRLGLVYRASRDDWSPKAFLDAKRNRSPCTITLIKIGDGDDSSASIVGGYS---------GVPVGRGHPSRAFLFML 864
            M R     ++ F  T +A  ++ NA+L      MD  W  ++ GW+R QQ +  +G+  ++  EG++RLN+GG+  NV RS++     E      LG LFE   D+R+PRD DGR VL+ESP+ VKH++H+L       R              G    +   E  PYL Y+   LG+  +           V GG+T     +    +S+L+ WC G+P+ L L+YRASRD +S   F    R     TITLI++   D    S+VGG+S         G+  G    S AFLF+L
Sbjct:    1 MLRRHFKQRDAFRETASAQIKQLNAALDLAISAMDEPWRDLENGWERHQQYLVDVGVRPTTGNEGVLRLNIGGVPANVHRSLIAEA--EGFKGSVLGALFEQMWDERVPRDMDGRIVLDESPACVKHIIHTLLRGGCTTRTKETASLCHFRSAAGPSAAVAAHE-EPYLLYISHVLGLSNVIPACPNTKGMVVAGGTTTANPLQLPQWSSLLRSWCPGDPAGLHLLYRASRDGFSTGPFQQCVRGVCE-TITLIRVKSDDGRPDSVVGGFSDIEIVPQEVGMETGNQRSSSAFLFLL 293          
BLAST of mRNA_P-littoralis_Contig167.12.1 vs. uniprot
Match: A0A6H5JD55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD55_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 2.900e-31
Identity = 80/192 (41.67%), Postives = 109/192 (56.77%), Query Frame = 1
Query:  196 MTAIGITNSS-PQEGMVRLNVGGLHVNVDRSVLEGKYDELSTNWTLGNLFEGK*DKRLPRDSDGRFVLNESPSFVKHLVHSLFVHSAAARGSNEFGGGVVGGLTVEEGRPYLGYVGRSLGVGWLGSE---SVKGGSTILRSSESGPLTSVLQGWCSGNPSRLGLVYRASRDDWSPKAFLDAKRNRSPCTITL 759
            +T +GIT  S  +EGMV LNVGG  +   RSVLEGK ++    W LG L E + DKR+PRDSDGR VL+ESP+  +            AR  ++        L  ++    L Y  R LG+    +     ++GG  IL   E+  LT+++QGWC G+P  L L+YRASRD WS ++F D  R+ SP TI+L
Sbjct:    5 LTEVGITKPSRSKEGMVMLNVGGSRLTFHRSVLEGKGEQQGLTWALGTLCEAEWDKRVPRDSDGRIVLDESPTCPRVW---------GAREEHD--------LAPDDKPELLYYTARVLGLRGQSAPFDMPMRGGPNILEPHETKRLTAIVQGWCPGHPGGLELLYRASRDGWSARSFDDKCRDGSPSTISL 179          
BLAST of mRNA_P-littoralis_Contig167.12.1 vs. uniprot
Match: D7FIX7_ECTSI (BTB_2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIX7_ECTSI)

HSP 1 Score: 130 bits (327), Expect = 7.590e-31
Identity = 99/272 (36.40%), Postives = 136/272 (50.00%), Query Frame = 1
Query:   94 ASARETNASLTQRRKEMDRAWYGIDAGWQRLQQCMTAIGITNSSPQEGMVRLNVGGLHVNVDRSVLEGKYDELSTNWTLGNLFEGK*DKRLPRDSDGRFVLNESPSFVKHLVHSLFVHSAAARGSNEFGGGVVGGLTVEEGRPYLGYVGRSLGV-GWLG--SESVKGGSTILRSSESGPLTSVLQGWCSGNPSRLGLVYRASRDDWSPKAFLDAKRNRSPCTITLIKI-GDGDDSSASIVGGYSGVP---------VGRGHPSR-AFLFMLK 867
            ASAR T A+L+QRR+EMD+AW   D GWQ LQ  MT                              EGK ++ S+ W LG+LFE + DKR+PRD+DGR VL+ESP  VKHL+ +L +   AA G+          ++ ++      +  R LG+ G L     ++KGG+T     E+  LT+V+Q WC GNP   G   +    D S           SP TIT +++ G G  ++  I+GG+S +P          G   PS  AFLFMLK
Sbjct:    3 ASARATEAALSQRRREMDQAWDDTDQGWQELQAHMT------------------------------EGKGEQPSSTWALGDLFEAEWDKRVPRDADGRIVLDESPICVKHLIEALLLRPNAANGTATG----EADMSRDDQPDLFHHTARVLGLSGQLAPVGMTIKGGTTTFDPHEASKLTAVVQRWCPGNP---GAACQDRCGDQS-----------SPTTITFLRVKGRGAAATDCIIGGFSSIPWDDFMYDSDAGYYSPSPGAFLFMLK 226          
BLAST of mRNA_P-littoralis_Contig167.12.1 vs. uniprot
Match: D7FR77_ECTSI (TLDc domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR77_ECTSI)

HSP 1 Score: 124 bits (312), Expect = 1.040e-28
Identity = 81/235 (34.47%), Postives = 122/235 (51.91%), Query Frame = 1
Query:  142 MDRAWYGIDAGWQRLQQCMTAIGITNSSPQEGMVRLNVGGLHVNVDRSVLEGKYDELSTNWTLGNLFEGK*DKRLPRDSDGRFVLNESPSFVKHLVHSLFVHSAAARGSNEFGGGVVGGLTVEEGRPYLGYVGRSLGV---GWLGSESV--KGGSTILRSSESGPLTSVLQGWCSGNPSRLGLVYRASRDDWSPKAFLDAKRNRSPCTITLIKIGDGDDS---SASIVGGYSGVP 822
            M + W  +  G Q+L+Q  T  G+  S+ ++  + LNVGG +V++ R+ L+ +   LS  W L NLF+   D+RLPRD++G  VL+ESP   KHLV +L                  GG+   + + YL YV  +LGV     +    V  +G + +    E   L   +  WC GNP RL L+YRASRD W  + F     + SP T+TL ++ D  +    + S++G +S VP
Sbjct:    1 MKKEWEEVAEGRQKLEQLETESGMLRSTFEDDTLTLNVGGSNVDISRADLQ-RLPALSEAWKLANLFDSDWDERLPRDANGLMVLDESPVCFKHLVDAL------------------GGVLPTDEQAYLPYVSNALGVPSPARVPRRRVDSEGSAMLGIGGELDRLARTVLDWCPGNPERLDLLYRASRDGWDTRHFHARCGDDSPMTVTLYRLNDASNRKGLNCSVLGCFSSVP 216          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig167.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6H5L232_9PHAE8.350e-6850.17TLDc domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FIY4_ECTSI1.290e-6445.72TLDc domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7G2H5_ECTSI4.970e-6251.14TLDc domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5LAP0_9PHAE1.290e-5943.84TLDc domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FIV0_ECTSI3.140e-4142.97TLDc domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FIU9_ECTSI7.650e-4041.83TLDc domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7G141_ECTSI4.700e-3734.01Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JD55_9PHAE2.900e-3141.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FIX7_ECTSI7.590e-3136.40BTB_2 domain-containing protein n=1 Tax=Ectocarpus... [more]
D7FR77_ECTSI1.040e-2834.47TLDc domain-containing protein n=1 Tax=Ectocarpus ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig167contigP-littoralis_Contig167:47035..47926 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size867
Hectar predicted targeting categoryother localisation
Exons2
Cds size312
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789805.8038833-UTR-P-littoralis_Contig167:47034..470761680789805.8038833-UTR-P-littoralis_Contig167:47034..47076Pylaiella littoralis U1_48UTRP-littoralis_Contig167 47035..47076 +
1680789805.832559-UTR-P-littoralis_Contig167:47388..475881680789805.832559-UTR-P-littoralis_Contig167:47388..47588Pylaiella littoralis U1_48UTRP-littoralis_Contig167 47389..47588 +
1680789805.8433254-UTR-P-littoralis_Contig167:47613..479261680789805.8433254-UTR-P-littoralis_Contig167:47613..47926Pylaiella littoralis U1_48UTRP-littoralis_Contig167 47614..47926 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789805.8149152-CDS-P-littoralis_Contig167:47076..473881680789805.8149152-CDS-P-littoralis_Contig167:47076..47388Pylaiella littoralis U1_48CDSP-littoralis_Contig167 47077..47388 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig167.12.1prot_P-littoralis_Contig167.12.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig167 47077..47388 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig167.12.1

>prot_P-littoralis_Contig167.12.1 ID=prot_P-littoralis_Contig167.12.1|Name=mRNA_P-littoralis_Contig167.12.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=104bp
MFRVKSNDKETFSATLTASARETNASLTQRRKEMDRAWYGIDAGWQRLQQ
CMTAIGITNSSPQEGMVRLNVGGLHVNVDRSVLEGKYDELSTNWTLGNLF
EGK*
back to top

mRNA from alignment at P-littoralis_Contig167:47035..47926+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig167.12.1 ID=mRNA_P-littoralis_Contig167.12.1|Name=mRNA_P-littoralis_Contig167.12.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=892bp|location=Sequence derived from alignment at P-littoralis_Contig167:47035..47926+ (Pylaiella littoralis U1_48)
CTTTGTCGCAGAGTTGAGTGCGATAATGGCCACCAGGCAGTCATGTTCCG TGTGAAGTCGAACGATAAAGAGACGTTCTCAGCCACTCTGACGGCCTCCG CCCGGGAAACAAATGCCTCCCTCACTCAGAGGCGAAAGGAGATGGACCGG GCGTGGTACGGCATCGATGCGGGATGGCAGCGTCTCCAGCAATGCATGAC CGCTATTGGGATCACCAATTCCTCACCCCAAGAGGGCATGGTGCGACTGA ATGTTGGCGGGTTGCACGTCAACGTTGATCGGTCTGTCCTGGAAGGGAAA TATGATGAGTTATCTACTAATTGGACCTTGGGCAACCTTTTCGAAGGAAA GTAGGACAAGCGGCTTCCTCGGGATTCTGACGGCCGTTTTGTGCTTAACG AGTCTCCGTCTTTCGTGAAGCATCTGGTGCACTCCCTTTTTGTACACTCG GCAGCAGCAAGGGGCTCCAATGAATTTGGCGGCGGTGTCGTCGGTGGATT GACGGTTGAAGAGGGAAGGCCTTATCTTGGCTATGTGGGTCGTTCCCTCG GTGTGTCGGGACAGGGGCAGGCGCACAAGCGGGTGGCTCGGGTCGGAATC GGTGAAGGGTGGAAGTACGATACTCCGTTCCAGTGAGTCAGGCCCCTTGA CTTCCGTATTGCAGGGCTGGTGTTCCGGTAACCCGAGTAGACTTGGGCTG GTGTACCGTGCCTCACGCGATGACTGGAGTCCCAAGGCGTTCCTCGATGC TAAGCGCAATCGCAGCCCCTGCACGATCACTTTGATCAAGATTGGGGATG GCGACGACAGCAGTGCTAGTATCGTCGGGGGATATTCAGGGGTACCCGTG GGCCGCGGGCATCCCTCGAGGGCCTTCTTGTTCATGCTCAAG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig167:47035..47926+

>mRNA_P-littoralis_Contig167.12.1 ID=mRNA_P-littoralis_Contig167.12.1|Name=mRNA_P-littoralis_Contig167.12.1|organism=Pylaiella littoralis U1_48|type=CDS|length=312bp|location=Sequence derived from alignment at P-littoralis_Contig167:47035..47926+ (Pylaiella littoralis U1_48)
ATGTTCCGTGTGAAGTCGAACGATAAAGAGACGTTCTCAGCCACTCTGAC
GGCCTCCGCCCGGGAAACAAATGCCTCCCTCACTCAGAGGCGAAAGGAGA
TGGACCGGGCGTGGTACGGCATCGATGCGGGATGGCAGCGTCTCCAGCAA
TGCATGACCGCTATTGGGATCACCAATTCCTCACCCCAAGAGGGCATGGT
GCGACTGAATGTTGGCGGGTTGCACGTCAACGTTGATCGGTCTGTCCTGG
AAGGGAAATATGATGAGTTATCTACTAATTGGACCTTGGGCAACCTTTTC
GAAGGAAAGTAG
back to top