mRNA_P-littoralis_Contig167.12.1 (mRNA) Pylaiella littoralis U1_48
|
Overview
Homology
BLAST of mRNA_P-littoralis_Contig167.12.1 vs. uniprot
Match: A0A6H5L232_9PHAE (TLDc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L232_9PHAE) HSP 1 Score: 229 bits (583), Expect = 8.350e-68 Identity = 144/287 (50.17%), Postives = 176/287 (61.32%), Query Frame = 1
Query: 43 MFRVKSNDKETFSATLTASARETNASLTQRRKEMDRAWYGIDAGWQRLQQCMTAIGITNS-SPQEGMVRLNVGGLHVNVDRSVLEGKYDELSTNWTLGNLFEGK*DKRLPRDSDGRFVLNESPSFVKHLVHSLFVHSAAARGSNEFGGGVVGGLTVEEGRPYLGYVGRSLGVGW---LGSESVKGGSTILRSSESGPLTSVLQGWCSGNPSRLGLVYRASRDDWSPKAFLDAKRNRSPCTITLIKIGDGDDSSASIVGGYSGVPVGR---GHPS-----RAFLFMLK 867
M R N+ +TFSAT+TA ++E A+L QRRK M +AW ++ GW L QC GIT QEGM+RLNVGG H+ R VL+GK E S W LGNLFE D RLPRDSDGR VL++SP+ VK L+HSL S AA GS G L +E YL +V R+LG+ L V GG+TIL E G LT+ LQGWC GNP+ + L+YRASRDDWSP F + N SP TITL+++G +SASIVGG+S VP G S AF+FMLK
Sbjct: 1 MSRCHMNEDDTFSATVTAYSKEMEAALGQRRKGMSQAWEDVERGWHELNQCRIDAGITKPFGSQEGMLRLNVGGSHLRFRRCVLDGK-KEPSATWALGNLFESVWDDRLPRDSDGRIVLDKSPACVKDLIHSLIESSGAAPGSLPRGET----LAPDE-MAYLPHVARALGLSAYIPLQGMEVVGGTTILSHCEVGELTATLQGWCPGNPNTMQLLYRASRDDWSPYPFHASCGNNSPNTITLLRVG----ASASIVGGFSSVPWSPHAYGGDSVMSSLGAFIFMLK 277
BLAST of mRNA_P-littoralis_Contig167.12.1 vs. uniprot
Match: D7FIY4_ECTSI (TLDc domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIY4_ECTSI) HSP 1 Score: 216 bits (549), Expect = 1.290e-64 Identity = 139/304 (45.72%), Postives = 178/304 (58.55%), Query Frame = 1
Query: 1 LCRRVECDNGHQAVMFRVKSNDKETFSATLTASARETNASLTQRRKEMDRAWYGIDAGWQRLQQCMTAIGITNSSP-QEGMVRLNVGGLHVNVDRSVLEGKYDELSTNWTLGNLFEGK*DKRLPRDSDGRFVLNESPSFVKHLVHSLFVHSAAARGSNEFGGGVV--GGLTVEEGRPYLGYVGRSLGVGW----LGSESVKGGSTILRSSESGPLTSVLQGWCSGNPSRLGLVYRASRDDWSPKAFLDAKRNRSPCTITLIKI-GDGDDSSASIVGGYSGVP-------VGRGHPSRAFLFMLK 867
L R E +NGH M R +SN+++TFS L ASARETN L+QRRK MD+AW ID GWQ LQ+ M IGIT +EG+V+LNVGG + RSV EGK ++ LG+L E + DKR+PRDSDGR VL+ESP+ VK L H L + A+G+ VV +E L Y LG+ W +G S+ GG+TI E+ LT+V+QGWC G+P RL L+YRASRD W+ AF + P T+T ++ G G + SIVGG+S VP G AFLFMLK
Sbjct: 53 LSRYRESENGHN--MLRFQSNEQKTFSEILEASARETNDILSQRRKVMDQAWADIDEGWQALQEHMAKIGITKPLDLKEGLVKLNVGGSLLAFRRSVFEGKGKGATS--ALGSLCEAEWDKRIPRDSDGRIVLDESPTCVKRLFHDLLTPPSLAKGT------VVREDNFASDETPDLLRYTAHVLGLSWHLAPIGM-SITGGTTIFEPHEASRLTAVIQGWCPGHPGRLELLYRASRDGWNSAAFQATCGDDRPSTVTFFRVKGQGTGGTDSIVGGFSSVPWTPPGGSTGYTASPGAFLFMLK 345
BLAST of mRNA_P-littoralis_Contig167.12.1 vs. uniprot
Match: D7G2H5_ECTSI (TLDc domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2H5_ECTSI) HSP 1 Score: 214 bits (545), Expect = 4.970e-62 Identity = 135/264 (51.14%), Postives = 162/264 (61.36%), Query Frame = 1
Query: 115 ASLTQRRKEMDRAWYGIDAGWQRLQQCMTAIGITN-SSPQEGMVRLNVGGLHVNVDRSVLEGKYDELSTNWTLGNLFEGK*DKRLPRDSDGRFVLNESPSFVKHLVHSLFVHSAAARGSNEFGGGVVGGLTVEEGRPYLGYVGRSLGVGWL----GSESVKGGSTILRSSESGPLTSVLQGWCSGNPSRLGLVYRASRDDWSPKAFLDAKRNRSPCTITLIKIGDGDDSSASIVGGYSGVPVGR---GHPS-----RAFLFMLK 867
A L+QRRKEM +AW +D GW L QC GIT S Q+GM+RLNVGG H+N R +L G+ E S W LGNLFE D RLPRDSDGR VL+ESP+ VKHL+HSL S AA GS G L ++E YL YV R+LG+ G E V GG+T L E G LT+ LQGWC GNP+ + L+YRASRD WSP F + N SP TITL+++G +S SIVGG+S VP G S AF+FMLK
Sbjct: 3 AVLSQRRKEMSQAWEDVDRGWHELNQCRIDAGITKPSGSQQGMLRLNVGGSHLNFRRCILAGR-KEPSATWALGNLFESVWDDRLPRDSDGRIVLDESPACVKHLIHSLIESSGAAPGSLPRGDT----LALDE-MVYLPYVARALGLSAYIPRQGMEVV-GGTTSLSHCEVGELTATLQGWCPGNPNTMRLLYRASRDGWSPYPFHASCGNNSPNTITLLRVG----ASQSIVGGFSSVPWSPHAYGGDSIMSSLGAFIFMLK 255
BLAST of mRNA_P-littoralis_Contig167.12.1 vs. uniprot
Match: A0A6H5LAP0_9PHAE (TLDc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAP0_9PHAE) HSP 1 Score: 208 bits (530), Expect = 1.290e-59 Identity = 128/292 (43.84%), Postives = 173/292 (59.25%), Query Frame = 1
Query: 43 MFRVKSNDKETFSATLTASARETNASLTQRRKEMDRAWYGIDAGWQRLQQCMTAIGITNS-SPQEGMVRLNVGGLHVNVDRSVLEGKYDELSTNWTLGNLFEGK*DKRLPRDSDGRFVLNESPSFVKHLVHSLFVHSAAARGSNEFGGGVVGGLTVEEGRPYLGYVGRSLGV-GWLG--SESVKGGSTILRSSESGPLTSVLQGWCSGNPSRLGLVYRASRDDWSPKAFLDAKRNRSPCTITLIKI-GDGDDSSASIVGGYSGVPVG------------RGHPSRAFLFMLK 867
M R +SN+K+TFSATL S+R A+L+QRR EMD W ID GWQ L++ MT +GIT +EG+V+LNVGGL + RSVL+ + + W LGNLFE + DKR+PRDSDG VL+ESP+ VK LVH L S++++ + G G E L Y LG+ G L S++GG+TI E+ LT+V+Q WC G+P L L+YRASRD W+ F + SP T+TL+++ G + SI+GG+S VP RG P AF+F+LK
Sbjct: 1 MLRCQSNEKKTFSATLAVSSRAMEAALSQRRLEMDHEWDSIDEGWQTLRERMTEVGITKPLESKEGIVKLNVGGLLLAFRRSVLDSEGKQQPPTWALGNLFEAEWDKRVPRDSDGHIVLDESPTCVKQLVHRLLTASSSSKATV----GRAGDFARNEDPALLHYTAGVLGLSGCLAPVGMSIQGGTTIFEPHETSKLTAVVQDWCPGHPGGLELLYRASRDGWNGATFNARCKGDSPSTVTLLRVKGCETGGTDSIIGGFSSVPWSPAIQNYSYGYYLRGSPG-AFVFILK 287
BLAST of mRNA_P-littoralis_Contig167.12.1 vs. uniprot
Match: D7FIV0_ECTSI (TLDc domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIV0_ECTSI) HSP 1 Score: 159 bits (401), Expect = 3.140e-41 Identity = 107/249 (42.97%), Postives = 145/249 (58.23%), Query Frame = 1
Query: 142 MDRAWYGIDAGWQRLQQCMTAIGITN-SSPQEGMVRLNVGGLHVNVDRSVLEGKYDELSTNWTLGNLFEG-K*DKRLPRDSDGRFVLNESPSFVKHLVHSLFVHSAAARGSNEFGGGVVGGLTVEEGRPYLGYVGRSLGVGWLGSESVKGGSTILRSSESGPLTSVLQGWCSGNPSRLGLVYRASRDDWSPKAFLDAKRNRSPCTITLIKIGDGD-DSSASIVGGYSGVPVGRGHPSR----AFLFMLK 867
M + W +D+GW+ L+ M G++ SS Q +VRLNVGGL VN+ RSVL + S+ WTLG+LFEG DKRLPR DGR VL+ESP V+ L+ S+ G++ F ++ +PY+G V +LG+ LG +V GGST L E+ LT+ + GWC G P L L+YRASRD WS A + SP TI+L ++ D ++S SIVGG+S VP P +FLF+LK
Sbjct: 1 MKKEWDKLDSGWEALESKMNETGMSMVSSIQPSIVRLNVGGLDVNIARSVLRKAGESSSSTWTLGDLFEGCVWDKRLPRCEDGRIVLDESPVCVEELLCDA---SSKRPGNSNF---------PDDEKPYIGGVASALGLD-LGM-TVPGGSTTLPHDEAERLTATILGWCPGRPEGLELLYRASRDGWSGDALHARCGDDSPSTISLFRVKTQDANTSDSIVGGFSSVPWTALPPENRGLDSFLFILK 235
BLAST of mRNA_P-littoralis_Contig167.12.1 vs. uniprot
Match: D7FIU9_ECTSI (TLDc domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIU9_ECTSI) HSP 1 Score: 148 bits (373), Expect = 7.650e-40 Identity = 105/251 (41.83%), Postives = 144/251 (57.37%), Query Frame = 1
Query: 142 MDRAWYGIDAGWQRLQQCMTAIGITN-SSPQEGMVRLNVGGLHVNVDRSVLEGKYDELSTNWTLGNLFEG-K*DKRLPRDSDGRFVLNESPSFVKHLVHSLFVHSAAARGSNEFGGGVVGGLTVEEGRPYLGYVGRSLGVGWLGSESVKGGSTILRSSESGPLTSVLQGWCSGNPSRLGLVYRASRDDWSPKAFLDAKRNRSPCTITLIKIG-DGDDSSASIVGGYSGV------PVGRG-HPSRAFLFML 864
M + W +D+GW+ L+ ++ G++ SS VRLNVGGL VN+ RSV + S++WTLG+LFEG DKRLPR DGR VL+ S V+ L L +++ R N L V+E +PY+G V +LG+ +G + V GGSTIL+ E+ LT+ GWC G P L L+YRASRD WS AF + SP T +L +I + ++ S S+VGG+S V RG H +FLFML
Sbjct: 1 MKKEWDTLDSGWEALESKISQAGMSMVSSIPPSFVRLNVGGLDVNIARSVFRKTGEASSSSWTLGDLFEGCVWDKRLPRSEDGRIVLDASAVCVEEL---LCDGASSKRSGNN-------NLPVDE-KPYIGGVASALGL-CVGMK-VTGGSTILQLHEAERLTATFLGWCPGRPEGLELLYRASRDGWSGAAFHARCGDDSPFTTSLFRIKVESNEDSYSVVGGFSSVLWTTRSTDDRGVHSPGSFLFML 238
BLAST of mRNA_P-littoralis_Contig167.12.1 vs. uniprot
Match: D7G141_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G141_ECTSI) HSP 1 Score: 149 bits (376), Expect = 4.700e-37 Identity = 101/297 (34.01%), Postives = 147/297 (49.49%), Query Frame = 1
Query: 43 MFRVKSNDKETFSATLTASARETNASLTQRRKEMDRAWYGIDAGWQRLQQCMTAIGITNSSPQEGMVRLNVGGLHVNVDRSVLEGKYDELSTNWTLGNLFEGK*DKRLPRDSDGRFVLNESPSFVKHLVHSLFVHSAAARGSN-------EFGGGVVGGLTVEEGRPYLGYVGRSLGVGWL-------GSESVKGGSTILRSSESGPLTSVLQGWCSGNPSRLGLVYRASRDDWSPKAFLDAKRNRSPCTITLIKIGDGDDSSASIVGGYS---------GVPVGRGHPSRAFLFML 864
M R ++ F T +A ++ NA+L MD W ++ GW+R QQ + +G+ ++ EG++RLN+GG+ NV RS++ E LG LFE D+R+PRD DGR VL+ESP+ VKH++H+L R G + E PYL Y+ LG+ + V GG+T + +S+L+ WC G+P+ L L+YRASRD +S F R TITLI++ D S+VGG+S G+ G S AFLF+L
Sbjct: 1 MLRRHFKQRDAFRETASAQIKQLNAALDLAISAMDEPWRDLENGWERHQQYLVDVGVRPTTGNEGVLRLNIGGVPANVHRSLIAEA--EGFKGSVLGALFEQMWDERVPRDMDGRIVLDESPACVKHIIHTLLRGGCTTRTKETASLCHFRSAAGPSAAVAAHE-EPYLLYISHVLGLSNVIPACPNTKGMVVAGGTTTANPLQLPQWSSLLRSWCPGDPAGLHLLYRASRDGFSTGPFQQCVRGVCE-TITLIRVKSDDGRPDSVVGGFSDIEIVPQEVGMETGNQRSSSAFLFLL 293
BLAST of mRNA_P-littoralis_Contig167.12.1 vs. uniprot
Match: A0A6H5JD55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD55_9PHAE) HSP 1 Score: 130 bits (328), Expect = 2.900e-31 Identity = 80/192 (41.67%), Postives = 109/192 (56.77%), Query Frame = 1
Query: 196 MTAIGITNSS-PQEGMVRLNVGGLHVNVDRSVLEGKYDELSTNWTLGNLFEGK*DKRLPRDSDGRFVLNESPSFVKHLVHSLFVHSAAARGSNEFGGGVVGGLTVEEGRPYLGYVGRSLGVGWLGSE---SVKGGSTILRSSESGPLTSVLQGWCSGNPSRLGLVYRASRDDWSPKAFLDAKRNRSPCTITL 759
+T +GIT S +EGMV LNVGG + RSVLEGK ++ W LG L E + DKR+PRDSDGR VL+ESP+ + AR ++ L ++ L Y R LG+ + ++GG IL E+ LT+++QGWC G+P L L+YRASRD WS ++F D R+ SP TI+L
Sbjct: 5 LTEVGITKPSRSKEGMVMLNVGGSRLTFHRSVLEGKGEQQGLTWALGTLCEAEWDKRVPRDSDGRIVLDESPTCPRVW---------GAREEHD--------LAPDDKPELLYYTARVLGLRGQSAPFDMPMRGGPNILEPHETKRLTAIVQGWCPGHPGGLELLYRASRDGWSARSFDDKCRDGSPSTISL 179
BLAST of mRNA_P-littoralis_Contig167.12.1 vs. uniprot
Match: D7FIX7_ECTSI (BTB_2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIX7_ECTSI) HSP 1 Score: 130 bits (327), Expect = 7.590e-31 Identity = 99/272 (36.40%), Postives = 136/272 (50.00%), Query Frame = 1
Query: 94 ASARETNASLTQRRKEMDRAWYGIDAGWQRLQQCMTAIGITNSSPQEGMVRLNVGGLHVNVDRSVLEGKYDELSTNWTLGNLFEGK*DKRLPRDSDGRFVLNESPSFVKHLVHSLFVHSAAARGSNEFGGGVVGGLTVEEGRPYLGYVGRSLGV-GWLG--SESVKGGSTILRSSESGPLTSVLQGWCSGNPSRLGLVYRASRDDWSPKAFLDAKRNRSPCTITLIKI-GDGDDSSASIVGGYSGVP---------VGRGHPSR-AFLFMLK 867
ASAR T A+L+QRR+EMD+AW D GWQ LQ MT EGK ++ S+ W LG+LFE + DKR+PRD+DGR VL+ESP VKHL+ +L + AA G+ ++ ++ + R LG+ G L ++KGG+T E+ LT+V+Q WC GNP G + D S SP TIT +++ G G ++ I+GG+S +P G PS AFLFMLK
Sbjct: 3 ASARATEAALSQRRREMDQAWDDTDQGWQELQAHMT------------------------------EGKGEQPSSTWALGDLFEAEWDKRVPRDADGRIVLDESPICVKHLIEALLLRPNAANGTATG----EADMSRDDQPDLFHHTARVLGLSGQLAPVGMTIKGGTTTFDPHEASKLTAVVQRWCPGNP---GAACQDRCGDQS-----------SPTTITFLRVKGRGAAATDCIIGGFSSIPWDDFMYDSDAGYYSPSPGAFLFMLK 226
BLAST of mRNA_P-littoralis_Contig167.12.1 vs. uniprot
Match: D7FR77_ECTSI (TLDc domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR77_ECTSI) HSP 1 Score: 124 bits (312), Expect = 1.040e-28 Identity = 81/235 (34.47%), Postives = 122/235 (51.91%), Query Frame = 1
Query: 142 MDRAWYGIDAGWQRLQQCMTAIGITNSSPQEGMVRLNVGGLHVNVDRSVLEGKYDELSTNWTLGNLFEGK*DKRLPRDSDGRFVLNESPSFVKHLVHSLFVHSAAARGSNEFGGGVVGGLTVEEGRPYLGYVGRSLGV---GWLGSESV--KGGSTILRSSESGPLTSVLQGWCSGNPSRLGLVYRASRDDWSPKAFLDAKRNRSPCTITLIKIGDGDDS---SASIVGGYSGVP 822
M + W + G Q+L+Q T G+ S+ ++ + LNVGG +V++ R+ L+ + LS W L NLF+ D+RLPRD++G VL+ESP KHLV +L GG+ + + YL YV +LGV + V +G + + E L + WC GNP RL L+YRASRD W + F + SP T+TL ++ D + + S++G +S VP
Sbjct: 1 MKKEWEEVAEGRQKLEQLETESGMLRSTFEDDTLTLNVGGSNVDISRADLQ-RLPALSEAWKLANLFDSDWDERLPRDANGLMVLDESPVCFKHLVDAL------------------GGVLPTDEQAYLPYVSNALGVPSPARVPRRRVDSEGSAMLGIGGELDRLARTVLDWCPGNPERLDLLYRASRDGWDTRHFHARCGDDSPMTVTLYRLNDASNRKGLNCSVLGCFSSVP 216 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig167.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 14
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig167.12.1 >prot_P-littoralis_Contig167.12.1 ID=prot_P-littoralis_Contig167.12.1|Name=mRNA_P-littoralis_Contig167.12.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=104bp MFRVKSNDKETFSATLTASARETNASLTQRRKEMDRAWYGIDAGWQRLQQback to top mRNA from alignment at P-littoralis_Contig167:47035..47926+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig167.12.1 ID=mRNA_P-littoralis_Contig167.12.1|Name=mRNA_P-littoralis_Contig167.12.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=892bp|location=Sequence derived from alignment at P-littoralis_Contig167:47035..47926+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig167:47035..47926+ >mRNA_P-littoralis_Contig167.12.1 ID=mRNA_P-littoralis_Contig167.12.1|Name=mRNA_P-littoralis_Contig167.12.1|organism=Pylaiella littoralis U1_48|type=CDS|length=312bp|location=Sequence derived from alignment at P-littoralis_Contig167:47035..47926+ (Pylaiella littoralis U1_48)back to top |