mRNA_P-littoralis_Contig167.68.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig167.68.2
Unique NamemRNA_P-littoralis_Contig167.68.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig167.68.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig167contigP-littoralis_Contig167:339278..347592 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size230
Hectar predicted targeting categoryother localisation
Exons2
Cds size228
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789805.382838-CDS-P-littoralis_Contig167:339278..3393381680789805.382838-CDS-P-littoralis_Contig167:339278..339338Pylaiella littoralis U1_48CDSP-littoralis_Contig167 339279..339338 -
1680789805.394628-CDS-P-littoralis_Contig167:347424..3475921680789805.394628-CDS-P-littoralis_Contig167:347424..347592Pylaiella littoralis U1_48CDSP-littoralis_Contig167 347425..347592 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig167.68.2prot_P-littoralis_Contig167.68.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig167 339279..347592 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig167.68.2

>prot_P-littoralis_Contig167.68.2 ID=prot_P-littoralis_Contig167.68.2|Name=mRNA_P-littoralis_Contig167.68.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=76bp
AGAPAGASTEAGVDPLVARLQTLLAPPATEAAGAAALAPEDQRVVNYFSL
QHENFEMSPLVTTALTVLRNESNTED
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mRNA from alignment at P-littoralis_Contig167:339278..347592-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig167.68.2 ID=mRNA_P-littoralis_Contig167.68.2|Name=mRNA_P-littoralis_Contig167.68.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=8315bp|location=Sequence derived from alignment at P-littoralis_Contig167:339278..347592- (Pylaiella littoralis U1_48)
GCTGGAGCGCCTGCTGGAGCGTCTACGGAAGCCGGCGTGGACCCGCTGGT
CGCGCGCCTTCAGACCCTGTTGGCACCGCCAGCGACAGAAGCGGCTGGCG
CGGCCGCGTTGGCTCCGGAAGACCAGCGGGTGGTGAATTATTTTTCCCTT
CAACATGAAAATTTCGAGGTGGGTTGGTGTTTTTCCTCCCTGATTCTGAA
TGGTGTTGTTTGCGAGATTGTTTACTGCTGTCTTCTTCTTTGTTTCAGGA
TTGATTGCTTCCTTGTTCTCACGATTGATTACTGCTGGCAAAAACAAAAT
CCTCTTGTGCTTTCTCTTTATTCATGCGTTCAGCGAAAGTTCAACATGGC
CCTTTCTGCGATTTGCGATCTACAGATACTCTCGGTCTCTTGCTTGTTTC
AGGATTGATTGCTGCCTTGTTCTCACGATTGATTGTCACGATTGATTACT
GCTGGCAAAAATCCTCTTGCGCTTTCGCTTTATTTATGCGTTCAGCGAAA
AATTCAACATGACCCTTTTCCGCGATTTGCGATCTACAGATATACTCGGA
GTATGCTTTAAGCGATTTGCGATCTACAGATGCATCATATCCTGCGAATT
TGCGATCTACAGATGCATATGCTGTCGCGCTTTTGTTTCGCATACCTCTG
TATGGATACCTATATGTACAGCTGAACTGCCACAACTGCAGCTGCCCGGT
ATATAGGTCTATACTCTATACTGCTGTATATAGCTGCTGTATATAGCTGA
ACTGCAGGTATAGCTGCACTGCCGCGTCATCTACCTTTATACCTATACGG
CTGTATATCGTTGAATTGCTGAACTGCACGTAAGCGGCAGTGCTGGGTCA
TCTACCTATATATCTACTCCGTATACTGCTCTCCGTATACTGCCGTGTAT
AGCTGAAATGCAGGTTCAGCTGCAGCTAGTTTAGACAGCTGCATGCGGTG
CCATCTATACATATACCCACGGCGGCAGGCCTATGCGGCGATATATATCT
GCACTGCAAGGTCTATACTGTTGTATTTTCTTCTGTATATAGCTGAACTG
CAGGTTTGGCTGCACTACAGATCGGTTGTATAACACTGAACATCTGTTGT
ATAACGCTGAACTGCAGGTTTAGCCCTGCAGATCTGTTGTATGTAGCTGC
ACCGCAAGCTTAGACAGCGGCAGGCCGGGTCACTTACGGATATACCCACG
GCGACAAGCCTATGCTGCTACAGTATATGATGCTGTTATATATAGCTGCA
CGGAAAGGTCAAACTGCGGTATAGTCTATAGCTGTTCTGCGGTATACTTC
GAAGTATAATAATAACTAGGGTTAAGTAGTGGCCCCCCCGCCCCCTGTGG
GCGGGGGGGCCAGAATGTGACGTAGTGCGCAAAGTTTGGGTCAAACCTAC
TACGACTGAAAGCCGATGATGCATCCTGAGCAAATCAATCAAACCCCAAA
CGTAGTCAGTCAACAATCAAATGAACCTCGCCCTCCCCCCATTCAAGCTG
ATGTTCCCACGAAACGTGGCCCCCGCAACCCCTCGATCCTGCTTCTTCGC
CAACTGCAACCGCAAGGGCCAAGCCCTCCCCCCTCGGCACTCCAGACAGC
ACATCGACCAGAAATCCGCTCTCTACGATCGTTTGATGCCACTTGTACCT
CGAGCACCCGAAGGGTCAGCCAACATAGCAAATGAAAAGAACATGGAAAA
GTAAGTGCACAGGTTACCCCTGATATCTGCACGACAATGTTATGAAAAGA
GAACGGTATAGTGTCAGATGTACCGCGAATGAAGCGAAGACAACGAAGGC
CGAGATATGCCGATATGAGATGTAGACTAAGCACGGCCATTCTGTGAAGC
ACAATGCAGATACACTAAAGCTATACCTATAGGGGGTCTGACACACAGCT
TACTAATGTATCATAGATTGCACCGCGCACAGGTTACCGCTCATATGTAT
CTGTACGACAATAATGTTATCCGAAGAGAACGGTAGAGGGTAAGATGTAC
GCCACTCAAAATGCAGCGAAGACGAGGAAGGCGGAGATTAGCTGAAATCG
TTATACCTCGATCACCCGAAGGGTGTGTCAGCACGGCAAGCCCATGTGAC
GTAGAAAGCGCCGCGCACAGGCCAACATTATCGGAAAAAGAAAGGTATGG
GGCCCAGATACCCCCCAAATGAAGCCAAGAGAAGGAAGGCGGTGATTCGC
AGAAATCAGACACAGACTAAGCACGGAGGGGTACGACGCACGAACGCAGA
CGTGCGTACCTCTGTCTATTGCGACATGATGGACGACCGAAGTGACGCAC
GAGGGCCAGGCCCTCTGTAAGCTTCTTGGATTGGTCAGTGAACCCTTGGG
TGAAACTCGACGGTATGATGACACGGTCGACGCCAACTGCTTTATCACGA
CGAGGTCGAGGAATTCTGGCGGATGCAGACGCATGATGAACAGATGTCCT
GTATTTGTCTTGGTTGAAGACGTGGAAGGACAGACGTTGGTCTTCGATGC
AACTGAAAACGTCGATGAGAAACTCGTTCATCAAAGGCCCCAACTTCTGA
AAACGTGGCTCTGTGAGCATTAACTGGGTAACCCACTGGATGAGAGAAAT
CTTGTGCCCGGTGGTGCTTTTCAATTCGGGGTGCCAACCACACACCCCGC
CATGGGGGAAAAGTAGTGGGTAGGTCAAAGGATAGTAATCCATGTCGCGG
AAGTCCACCGAGGTTGTTCTGCCTGTCGAAGTCTGGGTCATGGCTTTCCT
TTCTGTAGGAAGCACACCCCTGCTTCGGGTATCGACGGCTAAAATCTCCG
AAGATGGAGCCCCAGGCGTGGTGAAAGCGAGAGAGTTCGATCTGGTCGTA
GTTGATGGCCTACGAATGTTAATCGACACACGCAGTCGGGAAGAGGGGTG
GAAGAATTGTAAGAATACGCACACGAAATGGTTCGTTATGTTACGTCATC
CACGGGGAAACACGGACGGAAGAAATGTTTCAATAGAGTATGTACGTACG
TGATACAGATACAGAAACATACATAGGAGTATATACACGGGTACATCTGT
CGTGTAATGTCTCACCGGTTGCTGACGGCGGCTTTTAGGCGTCCAATGTA
CGGACAAACCGCGCGGAGGGAAGTCCGGAGTTTGCCGAACACTTCGCTAT
CGAGGTGGTCGTACGTGTAATTTGGATCGTGCAGCAGCCACTGGATGTTG
GTGTGGTCACCCTTCCTGGTGGAATGGTATGTTCTGGTTTGAGGGCATAG
TGGGCGTCGAGGGGTTTGTTGGAGGCAGGCGTGGTATGTCAATTAGTTTA
GATTGCTGCACGAGATGCAAGACCGTAGCCATGCAGCAAGCTGTAGTTGT
CAGCGGTAGTCCAGCTACTAAATCGATTGGAACAATGTCGCTAAGCAGCA
CTCAGTACATATCATACAGCAAACAGTAGCATGGTCGATATACTGCGGCA
GCAGTTTATTTTTATTTTTTGAAGTTTACCTATTATCCATTATCCATGCA
TAGTGTACATAAAGCGTACTTATCCGCAGTGTGCGTATTACGTAGACATA
CCTTCCTTACGGACGTGAAAACGACAGCGAGTGAGTGTAGTAGTGCAAGT
AGTGTTGCGTGCTGCAGAGTACAACACGATATAGATTTAGTGTAAATACA
TACATACATACATACATACATAATACACATGTACAACATGTAGACCATGC
TGCATAATTTTCTCACCTTCCTTGCACGGAGAGGAGATGATCACCATACA
CCTTCTTGAGTTCACCATCTTCCACATTCATAGCGGAGAAGTTACAACGA
CAGTTGCAGGCCCGCGAGTTTTTACGAAAGTTGACAGCCCATGCGTCGGG
AGAGTTGTACATTTCCTCCATCAACGGCGGAAGCGGCGGCAATGGCGGGA
GAATCCCTTTGCTATTTTTACAGCAGAGGCCTTTGGATTCTTTGGCAAAA
AGCTTGGCACCACAATGTTGGCAAGAGCTGGCGTTCTTTATGTTGACACC
CGCCGCTTCACGCGCCGCAGAGAGAACTTCCTTGCGTCGCTGTATGGCGT
CATGAAGGTCGGCTATATCATCCCCTTGTTGTACAGAGAACAGGTCCGCC
TCCCAACGATGACGTCTCGCTTCTAGAACCGCAGTTCTAGCAGTGCGTTG
ATCAATCCTCCGCTGAAGTCGACGGTTGTTGACAGAAGTTTTGTTGACGT
GGTATCTCCTGAGCTGTCCGTCCGCTACGGCTTTCTTCTTCACGAACGTA
GCGAGCTGCCTCTTCTCGCGGATGGCTGCTTTTTGTGCTGCGTACAACAT
ACGTCTCTGTCTGTTTCGTCGCAAACGCTCTGCATCCGTTGGTTTGTTCC
TGGTTCGGTTGTTGGTGTTCATGTTGTTTGTGGGCACGACGAGTCGGGTT
GGGTAGGTAACTGTTACGGGCGGTTCATAGGGGACGTCCGTTCTGGTATT
TTGTAACTTCTAGGTGGGTTGTTGATTCGGATGCGTAGCCCCTCTCGGGG
GTGCGAGATGCCCACCAAGGATCAGTGATATGAAAGTGATATGAATTGAT
ACGAAACCTTGAGCACTTTTGGGGCTAAATTTTGAGCACACACACGGAGA
CCAGAGGGCTAAAATTGTGCACACACTTGCACACACGACGCACTCCGGAC
AGCACTCTATCGAGCTCGGCAGGAAGGTCTTCTGATACGTATTCCCATTT
ATGCGTGATGTTGGTCACACAATCGCTGCCAGCAATGCTGCCAGCTGAAC
ACTCGGCCTTGTGGAGGATGCTGTGTGTGGGTTCCCCACCTGTTATATAA
CTATGGGAATGAGGTGGTGGGTGTGATGGGTGCATGGATGGGGAAATTTT
CGGAGGGGTACAAGTATTGTAGGACGCACCGGCACTGTCAGGTTTATTAG
AAAAATGTGAGATTTTTCTATTTTCGGGGTTGACGCACTCCATTTGGTGG
TGTGTGGTGTTGTTGTGGTGTGCGCGTGGATACACGGTGATCCTAATGAT
GTTCGGCGTGTGTCGTGGTGTACAGTGGTGATTATGAGTGTACCGAAGGA
TTGAAATGGTGAATGCGATATGCGTGTGTCCACAAACTCATCTTCGCTGG
ACTCATCGAAGGTCGTACGTACATAAGTATAGAAGACGCGACGCGGGACT
GTGGGAAAAATGGGTCGCCGCAAAAGTCCTTGATGTTCTTCGATGCCACG
GCCACTTGTGTCCGAGGCCACCGGTCGTAACCCGCTCGACTGCGGGTCCC
CAGCAGTACTGTATGAGGTTGTGCTGTAGAGCCGTATTTCATGAGGTTGG
AGTACATGGCGGCCATGAAACGAATGAGAGACACAAGGTGTCCAGACTAC
ATTATTCGCGGAGACGTGCTGCTGCTGCTGCTGCAGTACATACATGCACC
TCTCCGGCATCAACACTGGCGGTGATGCAAGTGGAACATTACAGACATCA
CCGGCGGTCCTGTTTCCGTACATGCTCGCCGTTCCACGACGATTGAAGGT
GGTAACAGCTGTATTTCAAATGTCTGCCTGTGGGAGAACGCAGAAAAAAA
ACGTTCGAAAAAAAAAAATCGCTCCCTACACTATGTTCTAGATTAACGAC
GACATAAACAATCCTGTCTATATATAATTATTATAACATGACACACTATG
TTCTAGATTAACGACGACATAAACAATCCTGTCTATATAAAAAAAAAACG
TTCGAAAAAAAAAAAAAAACGCCCCTAGACTATGTTCTAGATTAACGACG
ACATAAACAATCCTGTCTATGTATAATTAACATGACACACTATGTTCTAG
ATTAACGACGACATAAACAATCCTGTCTTTACCCGAGTGAGGACTACACC
TCTTAACATCTATATATAATTAACATGAAAACGCCCCTACACTATGTTCT
AGATTAACGACGACATAAACAATCCTGTCTATATAATTATTATAACATGA
CACACTATGTTCTAGATTAACGACGACATGTTGTTGTTGATTCTCACATT
AACTCACTACCGCCGCAGTCTAGCCCGTGGTCACAAACCAGGCACATATC
GTGCTAGGAGAAAAAAAATGAAAAAATAAAATATATGGACTATGATCACC
CACAGTCAGAAATCAGATATGGTACCGTTGGGGTACCATCTGTGGCCAGA
ATACCAAATAAATACAGAAAAAATAACAGGCTCGAAAGAAAAACAAAAAT
TGGAAACAGTCCGACAAACAAAAAAAATAAAATAAAATAACCAAGACAAA
CCTCATCAACCATAACCATATACTTCGAAGTACTTCGTACATCGAACCAG
GGCCCAGGGCCATGACAGACCAAGGCAAACGCAAACTAGGGCGATGGTCC
AGTAACTACATTATCAACAGACGAAAGACAAAAAAAGACAAAAAATAAAA
TAAGAAGAAGAAGAAGAAGATACAGTGAGGGCACGACATAAACAATCCTG
TCTATATATAATTATGAAAAAAAAACGTTCGAAAAAAAAAAAAACGCCCA
TATATAATTAACATGACACACTATGTTCTAGATTAACGACGACATAAACA
ATCCTGTCTATATATAATCATATACTCAGTATATATAATATTAACATTAT
GCGGTTCCACGGCTGTGGCATCTACCTATATATATATATATATCTAGGCT
ATATATCTAGGTCCTCTACCTATATATCTATACTGCTGCATATGCTGAAC
TGCCGGTATAGCCACATATATACACGGCCGCAAGCCTATGCTGCTATTTA
TAGTTCACTGCAGGTCTCTATTGCTTTACATAGCTGTACTGCCGTATATA
ATGGGTGTGTTTTTACCCACTTGCCGCAGCTTTTCGTATGGGATGCCTTT
CCCTTATTTCCCACTGGCCGCAGTCATCGTATGCAATACGTTTCTCGTTT
GCCGCAGCCACTGTATGAGATGTCCTTTCCCGCGTTAGCCGCCGCTACCC
CACCTTAGCCGCAGCTATCGAAAATTCATTTCGCCGCAGCCACCATCCTA
CGAGTTGTGTCTTCCACTTTAGCCGCCGCGGCAGTATCGTATTGTCATTT
CGCCGCAGCCACCAAATGAGGTGTAATTCCCCCCCCTTGCAGCAGCCATC
GTCTAATGGTTTCCTACCAGATTGTGTTTCGCCATTTGCCGCAGCCATCA
TCTGAGATGTGTTTCCTGGCGTTTCTTCTCGCCGCAACCATCATGTGAGG
TGTGCTTCCTTGCTTTTCGCCGCAGCCATCATATGAGGTGTGTTTTCCCC
TTGCGCCGCAGTCATCGTATGAGATGACGTTTCCGCCTTACTTTCGCCGC
AGCCATCGTATTGATGTGTTTTCCGTTTTCGCCGCAGCCATCGTATGAGA
TGTGATTTACATTTTCGCCGCAGCCATCGTGTGAGATGTGTTTTATACTT
TCGCCGCAGCCGTCGTATGAGATGTGCTTACAATTTCGCCGCAGCCATCG
TATGAGATGTGCTTTACATTTCGCCGCAGCCATCGTATGGGATGTGCTTT
ACATTTTCGCCGCAGCCATCGTATGAGATGTGCTTTACATTTTCGCCGCA
GCCATCGTATGAGATGTGCTTTACATTTTCGCCGCAGCCATCGTATGAGA
TGTGCTTTACATTTCGCCGCAGCCGTCGTATGAGATGTACTTTACATTTT
CGCCGAGATGCTTTACATTTTCGCCGTATGAGATGTGCTTTACATTTTCG
CCGCAGCCATCGTATGAGATGTGCTTTACATTTTCGCCGCAGCCATCGTA
TGCGATGTGCTTTACATTTTCGCCGCAGCCGTCGTATGAGATGTGCTTTA
CATTTTCGCCGCAGCCATCGTATGAGATGTGCTTTACATTTTCGCCGCAG
CCGTCATATGAGAGGTTTTCTTTTCGCCGCAGCCATCATATGAGATGTGC
TTTTCTGCTTTCGCCGCAGCCATCCTATGAGGTGTATCATCGTTTCACGG
CCGCATGATTTCGCCGTCTGCTATCAGTTTCTCTCGCTGCAGCCATCATC
TGCGATGTGCTCTTCCACCGCCATTCGTTGATACGTGTTTCCTTGGGCCG
CAGCTATCGAGGGGTCAGCATTCCACGGTCGCAGGATTTCGCCGTCCGTT
GTCAATACCAATTTGGACCACTTCCCTCTCTCGCGCAGCCATGGAGGGGC
CCGCGTTCCACCGTCGCATGATTTCGCCGTCTGTTGTCAATACCAATTTG
GACCATTTCCCTCTCTCGCTGGTTGCCGGTGTTTGTTTCCGCCGCGCGCT
GCAGATGAGTCCGCTCGTCACCACGGCGCTCACCGTCCTTCGGAACGAGT
CCAACACAGAAGATT
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Coding sequence (CDS) from alignment at P-littoralis_Contig167:339278..347592-

>mRNA_P-littoralis_Contig167.68.2 ID=mRNA_P-littoralis_Contig167.68.2|Name=mRNA_P-littoralis_Contig167.68.2|organism=Pylaiella littoralis U1_48|type=CDS|length=228bp|location=Sequence derived from alignment at P-littoralis_Contig167:339278..347592- (Pylaiella littoralis U1_48)
GCTGGAGCGCCTGCTGGAGCGTCTACGGAAGCCGGCGTGGACCCGCTGGT
CGCGCGCCTTCAGACCCTGTTGGCACCGCCAGCGACAGAAGCGGCTGGCG
CGGCCGCGTTGGCTCCGGAAGACCAGCGGGTGGTGAATTATTTTTCCCTT
CAACATGAAAATTTCGAGATGAGTCCGCTCGTCACCACGGCGCTCACCGT
CCTTCGGAACGAGTCCAACACAGAAGAT
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