mRNA_P-littoralis_Contig166.88.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig166.88.1
Unique NamemRNA_P-littoralis_Contig166.88.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig166.88.1 vs. uniprot
Match: D8LSK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSK2_ECTSI)

HSP 1 Score: 184 bits (467), Expect = 1.440e-55
Identity = 93/137 (67.88%), Postives = 111/137 (81.02%), Query Frame = 2
Query:  380 AGLSRSKEDLERLAGSVDIYHVNGQVFVHSTIDGIAKPKIIPTGDQARAFIQGVKAGSSSLEDLLTTALSELCKAKPEGLDAVRWLAEWLLEHNPNKPTVEQAEDQLPGGSV-EQQGGAMTVEGD-QVLRMVAMVES 784
            AGLSRS+ DLERLA S+ IYHV+GQ+F+HST DGIAKPKI+PTGDQARAF++G++AG+ SLE+LLTT  SELCK KPEGLDAVRWLAEWLLE+NPNKP V  A+D+   G   ++ GG  T  GD  V+ MVA VES
Sbjct:    4 AGLSRSRGDLERLAESIGIYHVHGQIFIHSTFDGIAKPKIVPTGDQARAFVEGMRAGTGSLEELLTTPFSELCKVKPEGLDAVRWLAEWLLENNPNKPKVAHADDERDSGEDGDEAGGGETALGDGPVVGMVATVES 140          
BLAST of mRNA_P-littoralis_Contig166.88.1 vs. uniprot
Match: A0A7S2XW71_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XW71_9STRA)

HSP 1 Score: 178 bits (452), Expect = 5.060e-53
Identity = 88/156 (56.41%), Postives = 115/156 (73.72%), Query Frame = 2
Query:  221 LSPLHTVGRKLEDGAMYIIELEDMSPAGVLVQAYKQETSDRYTLSISEGELSRAGLSRSKEDLERLAGSVDIYHVNG-QVFVHSTIDGIAKPKIIPTGDQARAFIQGVKAGSSSLEDLLTTALSELCKAKPEGLDAVRWLAEWLLEHNPNKPTVEQ 685
            LS L+  GR+L DG MYII + D+ PAGVL++AY Q TS  Y LS SE EL  AGLSR KEDL+ L  S+D+  ++G + F+ S++ GI  PK+IP G +A  FI+ + AG+ +L +LLTTALSELCK KP GLDAVRWL +WLLE+NPN+P +E+
Sbjct:    3 LSYLYVQGRQLSDGGMYIISVTDLDPAGVLIKAYNQVTSSEYYLSPSEDELEEAGLSRQKEDLKTLVESIDLTELSGGRTFLRSSLAGIKDPKVIPQGAEAAQFIKSIPAGTDTLPELLTTALSELCKVKPSGLDAVRWLGQWLLENNPNQPQIEE 158          
BLAST of mRNA_P-littoralis_Contig166.88.1 vs. uniprot
Match: A0A8J2WSR2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WSR2_9STRA)

HSP 1 Score: 160 bits (404), Expect = 1.020e-45
Identity = 76/155 (49.03%), Postives = 111/155 (71.61%), Query Frame = 2
Query:  230 LHTVGRKLEDGAMYIIELEDMSPAGVLVQAYKQETSDRYTLSISEGELSRAGLSRSKEDLERLAGSVDIYHVNGQVFVHSTIDGIAKPKIIPTGDQARAFIQGVKAGSSSLEDLLTTALSELCKAKPEGLDAVRWLAEWLLEHNPNKPTVEQAED 694
            ++   R L+D  +YI+++ D SP+G+LV+AY+Q  S  Y + I+E EL  A LSRS++ L +LA S+ +  ++G++ + S+I GI KPK++P+GD  R FI   KAG  +L D L+ ALSELCK KP GLDAVRWL +W+L++NPN+PTVE+  D
Sbjct:    8 IYNCARALDDNDIYILQMFDTSPSGLLVKAYRQTESVEYFMPITESELDNAALSRSQQALSKLAESLSLVELSGKLVLMSSITGIIKPKVLPSGDGVRQFIGRTKAGRDTLSDFLSEALSELCKEKPVGLDAVRWLGQWILKNNPNQPTVEEPTD 162          
BLAST of mRNA_P-littoralis_Contig166.88.1 vs. uniprot
Match: A0A836CDF1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDF1_9STRA)

HSP 1 Score: 159 bits (401), Expect = 1.660e-45
Identity = 80/151 (52.98%), Postives = 104/151 (68.87%), Query Frame = 2
Query:  251 LEDGAMYIIELEDMSPAGVLVQAYKQETSDRYTLSISEGELSRAGLSRSKEDLERLAGSVDIYHVNGQVFVHSTIDGIAKPKIIPTGDQARAFIQGVKAGSSSLEDLLTTALSELCKAKPEG---LDAVRWLAEWLLEHNPNKPTVEQAED 694
            L+DG MY I + DM PAGV+++A    T+  Y L  +E EL+ A L R++ DL RLA SVD+  V G  F++S++ GI KPKIIPTG+ A+ F+ G+     SL  LLTT LSELCK KP+G   +DAVRWL EWLL +NPN+P VE+ ED
Sbjct:    1 LQDGDMYTIGIFDMEPAGVVIRALNNATAKYYALGPTESELAAAKLGRNESDLARLAESVDLLEVGGTTFIYSSLPGICKPKIIPTGETAKDFMNGLTLRDGSLVQLLTTGLSELCKVKPQGPGGIDAVRWLGEWLLANNPNQPAVEEPED 151          
BLAST of mRNA_P-littoralis_Contig166.88.1 vs. uniprot
Match: A0A7S2WUZ4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WUZ4_9STRA)

HSP 1 Score: 155 bits (393), Expect = 4.630e-44
Identity = 77/161 (47.83%), Postives = 107/161 (66.46%), Query Frame = 2
Query:  212 RKKLSPLHTVGRKLEDGAMYIIELEDMSPAGVLVQAYKQETSDRYTLSISEGELSRAGLSRSKEDLERLAGSVDIYHVNGQVFVHSTIDGIAKPKIIPTGDQARAFIQGVKAGSSSLEDLLTTALSELCKAKPEGLDAVRWLAEWLLEHNPNKPTVEQAED 694
            R K + ++TVGR+L DG MYI  + D+ PAG+L++AY   TS   T S SE EL  A ++R+++ L +L  S DI    G   + S + GI KPK++P GD  R FI    AGS +L +LLTTAL+ELCK KP  L+AVRWL +WL+++NPN+P V + E+
Sbjct:    9 RMKKAAIYTVGRQLNDGDMYIFSVYDLEPAGLLIRAYCASTSSELTTSPSESELYAASITRAEKHLAQLCDSYDIVTKGGTPLLESNLTGINKPKLVPQGDGVRQFITATPAGSETLPELLTTALTELCKQKPAKLEAVRWLGQWLIDNNPNQPQVAEPEE 169          
BLAST of mRNA_P-littoralis_Contig166.88.1 vs. uniprot
Match: F0YNF8_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YNF8_AURAN)

HSP 1 Score: 134 bits (336), Expect = 1.380e-35
Identity = 70/150 (46.67%), Postives = 97/150 (64.67%), Query Frame = 2
Query:  245 RKLEDGAMYIIELEDMSPAGVLVQAYKQETSDRYTLSISEGELSRAGLSRSKEDLERLAGSVDIYHVNGQVFVHSTIDGIAKPKIIPTGDQARAFIQGVKAGSSSLEDLLTTALSELCKAKPEGLDAVRWLAEWLLEHNPNKPTVEQAED 694
            R L D  +YII++ D +P+G+LV+AY Q  S  Y + I+EGEL +A L+R +  L RLA S+D+    G +F+ S+I GIAKPK          FI   +AG  +L   L  AL+ELC+ KP GL+AV+ L EW+LEHNPN+P V++ ED
Sbjct:   13 RALNDNEIYIIQIFDNAPSGLLVKAYLQAKSLEYFMPITEGELEKAALNRGEAALTRLAESIDLVEKGGAIFLESSIPGIAKPK----------FIGRTRAGDGTLPAFLAKALAELCRDKPAGLEAVKRLGEWMLEHNPNQPAVDEPED 152          
BLAST of mRNA_P-littoralis_Contig166.88.1 vs. uniprot
Match: A0A5D6Y9V0_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y9V0_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 1.620e-13
Identity = 56/175 (32.00%), Postives = 85/175 (48.57%), Query Frame = 2
Query:  260 GAMYIIELEDMSPAGVLVQAYKQETSD------RYTLSISEGELSRAGLSRSKEDLERLAGSVDIYH------------VNGQVF----VHSTIDGIAKPKIIPTGDQARAFIQ----GVKAGSSSLE-------DLLTTALSELCKAKPEGLDAVRWLAEWLLEHNPNKPTVEQ 685
            G  + + L D+  AGV V A++   S+      +++   S  EL  AG++++ E    L  S+++               NG+ F    + S + GI  P  I +   A A+      G  A SSS E       D++   L+ELC++KP GLDAV+WL  W LEHNP +P VE+
Sbjct:   18 GIEFEVRLFDVDTAGVAVIAFQSAASECAAPPLKFSRVFSRSELRAAGIAKTLEGFVALVDSLELVEDAYFTAQDAAASSNGEEFAAFQLSSALPGIKCPPPIVSKQAAMAYFARAPVGPAAWSSSGELASEMLLDVVAKGLAELCRSKPAGLDAVKWLGAWFLEHNPTQPHVEE 192          
BLAST of mRNA_P-littoralis_Contig166.88.1 vs. uniprot
Match: A0A0P1B1F2_PLAHL (Dynein light chain n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B1F2_PLAHL)

HSP 1 Score: 68.6 bits (166), Expect = 2.060e-10
Identity = 46/171 (26.90%), Postives = 79/171 (46.20%), Query Frame = 2
Query:  260 GAMYIIELEDMSPAGVLVQAYK----QETSDRYTLSISEGELSRAGLSRSKEDLERLAGSV----DIYHVNGQVF-----------VHSTIDGIAKPKIIPTGDQARAFIQGVKAGSSS------------LEDLLTTALSELCKAKPEGLDAVRWLAEWLLEHNPNKPTV 679
            G  + I+L ++  AG+   A +    Q++   ++ + S  EL +AG++R+ +    L  S+    D+Y                  + S + GI+ P  I +   A ++      G S+            L +++   L+ELC+ KP GL+A+RWL  W LEHNP +P V
Sbjct:   18 GKEFEIQLFEVDGAGITAVAIQISQEQDSPQNFSRAFSRAELEKAGINRTSKAYVALVDSLELVEDVYFTGNDAISSGQNMLTAYRLSSKLPGISSPLPIVSHHAALSYFARAPVGFSARNTSQEVEEDNLLVNVIVKGLTELCREKPSGLNALRWLGNWFLEHNPAQPLV 188          
BLAST of mRNA_P-littoralis_Contig166.88.1 vs. uniprot
Match: A0A482SG18_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SG18_9ARCH)

HSP 1 Score: 64.7 bits (156), Expect = 2.410e-10
Identity = 29/43 (67.44%), Postives = 32/43 (74.42%), Query Frame = 2
Query:  551 SSSLEDLLTTALSELCKAKPEGLDAVRWLAEWLLEHNPNKPTV 679
            S +L DLL T L ELCK KP GLDAV+WL  WLL +NPNKP V
Sbjct:   10 SQNLHDLLVTGLVELCKEKPVGLDAVKWLGNWLLANNPNKPCV 52          
BLAST of mRNA_P-littoralis_Contig166.88.1 vs. uniprot
Match: A0A662WD89_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WD89_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 2.740e-10
Identity = 52/190 (27.37%), Postives = 83/190 (43.68%), Query Frame = 2
Query:  215 KKLSPLHTVGRKLEDGAMYIIELEDMSPAGVLVQAYK----QETSDRYTLSISEGELSRAGLSRSKEDLERLAGSVDIYHVNGQVF-----------------VHSTIDGIAKPKIIPTGDQARAFIQGVKAGSSS------------LEDLLTTALSELCKAKPEGLDAVRWLAEWLLEHNPNKPTVEQ 685
            KK +      R+   G  Y + L ++  AG+    ++    Q    +++   S  EL  AG++++ E    L  S+++  V    F                 + ST+ G++ P  I +   A A+      G S+            L DL+   L+ELC+ KP GL AV WL  WLL+HNP +P VE+
Sbjct:    3 KKYNSCSYKARRAFLGGEYEVRLFEVDDAGIAAVVFQTAGEQGAPLKFSRVFSRPELQNAGIAKTLEGHVALVNSLEL--VEDAYFTGIDATNAGQNEMAAYQLSSTLPGMSFPPPIVSQQAAMAYFMRAPVGLSTWNSSRTPEEENLLADLVVKGLTELCRQKPPGLKAVAWLGNWLLDHNPTQPKVEE 190          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig166.88.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSK2_ECTSI1.440e-5567.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2XW71_9STRA5.060e-5356.41Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A8J2WSR2_9STRA1.020e-4549.03Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A836CDF1_9STRA1.660e-4552.98Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2WUZ4_9STRA4.630e-4447.83Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
F0YNF8_AURAN1.380e-3546.67Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A5D6Y9V0_9STRA1.620e-1332.00Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A0P1B1F2_PLAHL2.060e-1026.90Dynein light chain n=1 Tax=Plasmopara halstedii Ta... [more]
A0A482SG18_9ARCH2.410e-1067.44Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A662WD89_9STRA2.740e-1027.37Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig166contigP-littoralis_Contig166:407970..411139 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LSK2
Model size787
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons4
Evalue2.47e-57
EggNOG OGs2CZH7@1|root,2SACH@2759|Eukaryota
Ec32 ortholog descriptionDpy-30 motif
Ec32 orthologEc-09_001940.1
Cds size591
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789804.5535228-UTR-P-littoralis_Contig166:407969..4081651680789804.5535228-UTR-P-littoralis_Contig166:407969..408165Pylaiella littoralis U1_48UTRP-littoralis_Contig166 407970..408165 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789804.5647304-CDS-P-littoralis_Contig166:408165..4083391680789804.5647304-CDS-P-littoralis_Contig166:408165..408339Pylaiella littoralis U1_48CDSP-littoralis_Contig166 408166..408339 +
1680789804.5731106-CDS-P-littoralis_Contig166:409681..4098331680789804.5731106-CDS-P-littoralis_Contig166:409681..409833Pylaiella littoralis U1_48CDSP-littoralis_Contig166 409682..409833 +
1680789804.5818667-CDS-P-littoralis_Contig166:410372..4104801680789804.5818667-CDS-P-littoralis_Contig166:410372..410480Pylaiella littoralis U1_48CDSP-littoralis_Contig166 410373..410480 +
1680789804.5951507-CDS-P-littoralis_Contig166:410982..4111391680789804.5951507-CDS-P-littoralis_Contig166:410982..411139Pylaiella littoralis U1_48CDSP-littoralis_Contig166 410983..411139 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig166.88.1prot_P-littoralis_Contig166.88.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig166 408166..411139 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig166.88.1

>prot_P-littoralis_Contig166.88.1 ID=prot_P-littoralis_Contig166.88.1|Name=mRNA_P-littoralis_Contig166.88.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=197bp
MATSWRKKLSPLHTVGRKLEDGAMYIIELEDMSPAGVLVQAYKQETSDRY
TLSISEGELSRAGLSRSKEDLERLAGSVDIYHVNGQVFVHSTIDGIAKPK
IIPTGDQARAFIQGVKAGSSSLEDLLTTALSELCKAKPEGLDAVRWLAEW
LLEHNPNKPTVEQAEDQLPGGSVEQQGGAMTVEGDQVLRMVAMVES*
back to top

mRNA from alignment at P-littoralis_Contig166:407970..411139+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig166.88.1 ID=mRNA_P-littoralis_Contig166.88.1|Name=mRNA_P-littoralis_Contig166.88.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3170bp|location=Sequence derived from alignment at P-littoralis_Contig166:407970..411139+ (Pylaiella littoralis U1_48)
CACTTACACACAGCGCACGCGTACCGATTGACCACCGAGGCCACCGGGAT TCGCTGCACGACCCTCCATATCATACGCAGTGCAGTATCGCACAGAAATA AAACCGCAATCGATCAAGCTTCCTACCGACAGCATTGGCGTTTACAAGAG AGGCAGGAGAACGAAGGCGGCACGGCGGCTCGAAGCATAGAGCACGATGG CAACATCATGGCGCAAGAAATTGTCGCCGCTGCACACCGTGGGCCGCAAG CTCGAGGATGGGGCGATGTACATAATCGAGCTGGAGGACATGAGTCCCGC CGGCGTCCTGGTGCAGGCGTACAAGCAGGAGACCTCGGATCGATATACCC TGTCGATCTCAGAAGGAGAGGTGGGGTTTGGTCAGATCGGGGGAGGGAGA GCTGCTCGGCAGCGCATGCTGCACAGGCATTAAGTAAATCTACCATACTT CTGTAGCTTCCAATCAACAGCACCTTGCTGCAGCCCTCGTTCATCGATAC GCGTGCGTGTACATACAGTACTCAGTCGGCGTCAGAACGAAAAGTGAGGC GGGGTCGGGAGGAGGATAGACCTGACCTCCTGTAGATGAACTATACTTGC GTGGACGACCATAGTTTTCAAGTAATATCAGCTCCATTTGCCGCAGCCAT CTTTGAAACTTCTACCGTAAAATCCCGATTGTTAAATTAAGCATCTACAA ACACGATGTAGGTCTCTCAGGACTGGAATACCCGCGGGATATTGTTTACA ACGCTCGAAGTACGAAGTTATCCGACAACATGGCCCCCACGACATGGAGT CAAATACATACAAGAACGCAATTCCTGTTGTCTAGATCGCCATCTTACTG AAAGCCTTTTGCCCTCAAGCAGGGTATGTGTCATGCGAGGATTTTTGGAA ATACAAACCCTGCAGGTTTCCACACATCTTTGAAGGTAGCCCCTATCTGC ACCTGCCAGGTGTATTCGTAACCGTGTGTACCTGTCGGGTCTGATTGGTC AGCTATACGCCGCGTGTGTGTTTCCAACCTATCATAGACGTGTTTTTTCA ACCAAACACGCCGCGGAGCGGCGCCGAGGCTCCTTGCGGACTCGGGTCGG CTCAGGGTCCGGGTTAGGGTTAGGGGGTTAGGGTTATGGTTATGGTTAGG GTTGGGGTTGGGTTGGGTCGACAGAGGTTTAAAATTGAAGCAGATCCTCG GTTAAAGTTGAAAAAATTGCGGGTCGACAGGTGCACGGTTCCCAAAACAC CTGCCAGGTGTAGACAGGGGCTACCCATCTTTGAAGTCACTGCTGATATA TATAACCGCCTTAAAAAAAAAACTCCTGCAAGTGTTTGTGACATTTCTTC TTTGTGACCCCGGCTGGTGCACCCATTTCATACCGACAGGGGTACTGTAC ATTGGTGCCCAGAAAAAATGGGACGAAAAAAAAAAAACACACACACACGT ACCTTTGCTGCAGGACAGAGGTGAAGTCACTTTGTTTGTCAGACCATAGC ACATAGCATGCATGCATGTACTTGGACGACTGTTTCGTAGTCAAGATAAA GCTTCCAAGCATTGCGCGACCATGCAATCGCCTCCACACTGAATGCGCCC AAAAGAGGGATCTACCCGACACATTCTTGTACCAGGTACGTTGTGCTAAC ACATCTATGACGCGATGCCCATATGCGTGTGTGTCTCGTCTCATTTCTAT TACACAATACAGCTTTCGCGAGCGGGTCTATCTCGATCGAAGGAAGACCT GGAGAGGTTGGCGGGTAGCGTAGACATCTACCACGTCAACGGCCAGGTTT TCGTCCACTCTACCATCGACGGCATCGCCAAGCCAAAGATAATACCTACG GGAGACCAGGCCAGGTGCGACGATGACAACCTTGCTGCGATGATGCAAAG AAGTACATGCATCTAAATACCCTGGAGGTGTTGAAGTACAGATATCAAGT GGTTACCATTGACTTCACAATTGGCGGCGAGGGGGAAACAGACGCAACCG GCACGTAAAGGATGTGGCGCATTACTGCCGTACATGACCGCGCCGATTTA TTTCGACATGATCCAACCTGTTGTGGTGTCGAGCCCTTCTGGCGGCAGAA TGTGGATACACACCATGTACTTTGAAATAAAAATGTACTTCGAAAAATAT ATTTTTAACACAAGTGCCAGGTTTGAGTAAATACACGCGATCCCGCACCG CCCCCGAAATCACGAAGTAGACACATTTCATCGAAAAACCACCACAGTGT AGCAGAGATTAAACTTCACTGCAGACATGGACTAAGTGAAGGTTTAATCC GAAAGATTGTCATCATGAAACGAATGCCTTCCCAAACTCCTGCTCGCGTT CCTCACACACCGTCCTCCCTGTACTTTTGCACGGCTCGGCACCCATCTTT CAGGGCGTTCATCCAGGGGGTGAAAGCGGGCAGCAGCTCCCTTGAGGATC TCCTCACTACCGCGCTGTCGGAGCTTTGTAAGGCGAAGCCGGAAGGGCTC GATGCCGTCAGGTGAGGGGGGGCTGGGATGGGAACGCAACGAAGCGCAGC AAATACACAAGAAAAATATGAAATCAGAGAATTCAACTCGTACAGCGAGC GGGTGTATGCTGTTCGCTCGAACCTGCGCTAGAACCAGGGTAGCCTGGGA CATTTTCCAGCGTGTTGGAGTACGCCCGGAGAGGAGCTTTTTTCCATCCG CTCCTGTCGGCACAACCTAATACGTGAAATGTTGTGAAACTCGCACGGGA TGCATCCATTGAAGAGGCGTAGTGTTATCCCGTGCCGCTGAGATGCGAGG TCGGTGGTCCGAAGGCAAAAAGGCTCGACGGGATCGGTGCGCCTCCACAT GTATCCCCGTCTTGCAGCTGCATCACAGAGCAGCTGCTATCATACCGAAT AAACCCCCAGCACATGGTGGCCACATCGGCTGGAAGCTGGATATCGCCAC GCGATTGCTGTGTGCTCTGCGAAATGGTGCCCACTCTTTCCGCCGGCACT GCATCTCAAACAGGTGGCTTGCAGAGTGGCTGTTGGAGCACAATCCCAAC AAGCCTACGGTTGAACAGGCAGAGGACCAGTTGCCGGGAGGTAGCGTGGA ACAGCAGGGGGGGGCAATGACGGTGGAGGGGGATCAAGTGTTACGAATGG TAGCAATGGTGGAGAGCTGA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig166:407970..411139+

>mRNA_P-littoralis_Contig166.88.1 ID=mRNA_P-littoralis_Contig166.88.1|Name=mRNA_P-littoralis_Contig166.88.1|organism=Pylaiella littoralis U1_48|type=CDS|length=591bp|location=Sequence derived from alignment at P-littoralis_Contig166:407970..411139+ (Pylaiella littoralis U1_48)
ATGGCAACATCATGGCGCAAGAAATTGTCGCCGCTGCACACCGTGGGCCG
CAAGCTCGAGGATGGGGCGATGTACATAATCGAGCTGGAGGACATGAGTC
CCGCCGGCGTCCTGGTGCAGGCGTACAAGCAGGAGACCTCGGATCGATAT
ACCCTGTCGATCTCAGAAGGAGAGCTTTCGCGAGCGGGTCTATCTCGATC
GAAGGAAGACCTGGAGAGGTTGGCGGGTAGCGTAGACATCTACCACGTCA
ACGGCCAGGTTTTCGTCCACTCTACCATCGACGGCATCGCCAAGCCAAAG
ATAATACCTACGGGAGACCAGGCCAGGGCGTTCATCCAGGGGGTGAAAGC
GGGCAGCAGCTCCCTTGAGGATCTCCTCACTACCGCGCTGTCGGAGCTTT
GTAAGGCGAAGCCGGAAGGGCTCGATGCCGTCAGGTGGCTTGCAGAGTGG
CTGTTGGAGCACAATCCCAACAAGCCTACGGTTGAACAGGCAGAGGACCA
GTTGCCGGGAGGTAGCGTGGAACAGCAGGGGGGGGCAATGACGGTGGAGG
GGGATCAAGTGTTACGAATGGTAGCAATGGTGGAGAGCTGA
back to top