mRNA_P-littoralis_Contig166.46.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig166.46.1
Unique NamemRNA_P-littoralis_Contig166.46.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig166.46.1 vs. uniprot
Match: A0A6H5J7P3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7P3_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 1.630e-13
Identity = 41/93 (44.09%), Postives = 54/93 (58.06%), Query Frame = 2 
Query:  311 WNKAFPEETTTCGKQQGDILARLDMEAVMDRQKKRAAEGDNVDYVLARTVRCILQYDAPLLSRRRGGGTSANAGLASKRPLTCFLGLKWRAQP 589
            W+K+ P+  TTCG+QQ  I+A + ++ V+DRQK+R ++GDNV YVLARTVR ILQY A       G G     G    R +  F G      P
Sbjct:  121 WDKSDPDRITTCGRQQAHIIAGVSIQHVLDRQKERDSQGDNVSYVLARTVRRILQYLAAQEIGASGQGNQCRRGDCFARAMGMFFGKGMEGIP 213
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BLAST of mRNA_P-littoralis_Contig166.46.1 vs. uniprot
Match: D8LNQ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNQ5_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 8.900e-7
Identity = 34/82 (41.46%), Postives = 42/82 (51.22%), Query Frame = 2 
Query:  302 LEAWNKAFPEETTTCGKQQGDILARLDMEAVMDRQKKRAAEGDNVDYVLARTVRCILQYDAPLLSRRRGGGTSANAGLASKR 547
            L  W K          +QQ  I+A + ++ V+DRQK R +EGDNV YVLARTVR  LQY A       G G     G+   R
Sbjct:   85 LAQWKKGDXXXXXXXXRQQAHIIAGVSIQHVLDRQKARDSEGDNVPYVLARTVRSNLQYLAAQEIGATGQGNQCRRGMFCSR 166
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig166.46.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J7P3_9PHAE1.630e-1344.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LNQ5_ECTSI8.900e-741.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig166contigP-littoralis_Contig166:274594..281665 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1229
Hectar predicted targeting categoryother localisation
Exons3
Cds size213
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789803.2240233-UTR-P-littoralis_Contig166:274593..2749031680789803.2240233-UTR-P-littoralis_Contig166:274593..274903Pylaiella littoralis U1_48UTRP-littoralis_Contig166 274594..274903 +
1680789803.2332242-UTR-P-littoralis_Contig166:274994..2750661680789803.2332242-UTR-P-littoralis_Contig166:274994..275066Pylaiella littoralis U1_48UTRP-littoralis_Contig166 274995..275066 +
1680789803.2670436-UTR-P-littoralis_Contig166:281031..2816651680789803.2670436-UTR-P-littoralis_Contig166:281031..281665Pylaiella littoralis U1_48UTRP-littoralis_Contig166 281032..281665 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789803.24237-CDS-P-littoralis_Contig166:275066..2750721680789803.24237-CDS-P-littoralis_Contig166:275066..275072Pylaiella littoralis U1_48CDSP-littoralis_Contig166 275067..275072 +
1680789803.2551513-CDS-P-littoralis_Contig166:280824..2810311680789803.2551513-CDS-P-littoralis_Contig166:280824..281031Pylaiella littoralis U1_48CDSP-littoralis_Contig166 280825..281031 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig166.46.1prot_P-littoralis_Contig166.46.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig166 275067..281031 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig166.46.1

>prot_P-littoralis_Contig166.46.1 ID=prot_P-littoralis_Contig166.46.1|Name=mRNA_P-littoralis_Contig166.46.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=71bp
MEAVMDRQKKRAAEGDNVDYVLARTVRCILQYDAPLLSRRRGGGTSANAG
LASKRPLTCFLGLKWRAQPP*
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mRNA from alignment at P-littoralis_Contig166:274594..281665+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig166.46.1 ID=mRNA_P-littoralis_Contig166.46.1|Name=mRNA_P-littoralis_Contig166.46.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=7072bp|location=Sequence derived from alignment at P-littoralis_Contig166:274594..281665+ (Pylaiella littoralis U1_48)
GACACATACATCCAACACGCACATTAGCAGTACTCGTAGCAGCTCATCAG
GATGGCTGAGGAGGAGCAGCGCCCTTACAAGCGCGCGAAGTCAAGTGGTG
TGGACGTAGCCGCACTCTTCACAGGCTTCAGAGACCTAGGACTCCGACGC
TGAGGGTGGAGGCGAGGCCTGATGTGGTACTGCTGTGGAGGATGAACCAG
CTAGCCAGCAAGAGAGGCAGGGAGAATTTGGGACGGAGCTAGCACACCTC
CTAATCTCCGAAGTTCCTCCTAAAAAGCCCTCTGCGTGGGCCGCAGAGCT
GCTGGAAGCAGTCAAGCACAACCCTGCTGGGCTACGGGAGGGAGTGGATC
GAGGCTAAAGCTCTTACGATCGAGTGTTCTTGCGTAGAGCCTCTCCCGAA
GTGGAACAAGGCGTTCCCTGAGGAGACCACTACGTGCGGGAAACAGCAGG
GCGACATACTGGCCAGGCTGGACATGGAGGTGTGTACAGCAGTAGGGGAT
GATATCCTGGATGCTCTCCTTAGTCTAAAGTGCACAGAAGAGGCGCTACG
AGAATCACTGCTGTATACATAGTGCATACGAATCGCAGTCACCATTCATA
GGCCGGGCAACATAACGCCATGCTACATGATGTGTAGTCTGTGTGATACT
CCGTACAGTAGCGGCTACGGTTTAACGGAAAATGTTTAAGAGAAAGTACC
GATTTAAGAGAGTAAAACGGCTTGGCACGCCCAAAATCGATTTAAGAGAA
AATGTAGCATGTTTCTGAGATTTTCTCTTAAATCGAGCTTCTGGAGGCCA
CGTCACATAGCCATCAACACATAGACCACACACACAGCAGCTGCCGACAC
CATGCCCTGCGCAGCGGGTAGTCGCTGTAACGTCCCCGATCACACGCCAG
GCCCGCCGCAGTTCACAAATCACCAATGCAGAGGTGTCTGCGGGCAGTAC
CTCCATGGCAACTGTGGTTTGCCGGACCCGCGCGGCACCAGCGAGATGCA
CCGCATTTGCCACGCCTGCGCTACCTCCCGCGAGCGTGAGCTACGGTTTA
AGAGAATACTCTGTTATACCGTAGCCAAAACGATATAACAGAAAGCACGA
TTCAAGAGAATAACACTGGGTTGTCCCGACCCTCTCTTAAACCGTAGCCG
CTACTGTATATCGTAAACTTATCGTACACTAAACACTACTGTAGGTTTCA
GTATCTCGCACATTCGAACGAACAGGAGTACTGCTGTAGGTGATAAAAGA
AAAAAAACACTCGGTTTCAGGTTCGAAAAGGGACCATGATATTTGTGTAC
GTGTCTGGTGAGGATTTACAGCACTTTTGATTGTACAGTAGAGGTCCCTG
TTTAAGGCCGCCCTGTGACAGACGAAATAACCGGCCTTAAATAGGGCACC
CGGCCTTATTGGGAACGGGTCTTGTTTAAGGCCGGTACCGGCCTTATAGA
GGATTGAGTTTTCCTCAATAAGGCCGATACCGGCCTTATTGAGGAATATT
GATGCTGCACTCAAGCCTTTCGGGACGGTGGCGGGCCCCAACTTGTCTGA
AGGCTCGCAGGAAGCACGCTATACATGAAAGATAAATATTGCCGCACAAG
TCGTGACAAAAAATGATGTTGCATATTTCCAAATATGTATTACTTGCTGC
CGCAGCTGACGTCAACAGAAAATATGTAGAAGTATATTAGAAGTATTTCA
CTTGGTACGTGCGAAGTACATACATATCTCATCGAGTGACACCCTCGTGA
AGGTCGACAATAATACTGCCAATCCTGATCAGAATGAGAGGACGCCCACA
GCAAAAAAAGTCCGACGATCTGCACAACACAACAACCATGGAAAAATGCA
CATGTTGCACCGACTGACCAACTGGTGCTTACCCGTCGAACACAAAGTCG
ACACAAAAATCGAACAGCCCGACCTCTCCACCCCCAGATACACTAACAAC
GGCACACGAAAGTTGAAAATACAAGGATGAAACTGGACATGACACCGGAC
GCGTGAGAACCACACTCAACTGATGCCTCCCCCTTGCGCCTATCGAGTCT
ACAAAAATTGCCTCATGTCTGTCTGCCTCGTTGCCTTCGAACCATGCGCT
GCGATCATTGCCATTTTGGCCTTCTGAATGTGGAAAGCGGCGTCATGGTT
GCCGCTCCCTCCGCTGCCGCCTCCAGAGCCCCGAAGTGCGACGAAAGTGC
CGCGTACGGCGGAGGTGCCGTATAACTTGAGGGTTCCTCGCTCGCTTCGT
CGTCCGAGCTCTCCTCCGCGAGAGCCGCGCCAGCAAGCACCTCCGTCATC
TCGTCCACGGCGTCCTGCTGAATCGCTTCCACAACATCCGGCTGGTCCTC
CACCGTCGCCCACACTTCAGCCGCTCGCACAGCGGCAGCATCGACGGGCT
CTCCCGCAGTGATGCCCAGGGCCGCCAGCATTTCTGTCAACTCCTCGTCA
ACAGGGCAGGACCTCTTCTGTGCTTCACGCACCCGTGAGCTCATGCTGGT
GAGGGTCTTTGCGAGAAGACCCACAGACTCCTTGTCTGCACGCCCCAGCA
CTGGCCCTCCCGCCGGGGCCGTGGAGCCACTCGGCCTGTGCTTACCGTGC
GCAGCCGTGAGCTCAGCCTCCATGTCTTCGGGGAGCGTCTTGGCCTTCAC
GAAGCACCTGGTGGGCGAGGTGCGGGGAAAGCAGCGGCACATTCGCAATA
GAGAGGGTGTCGGGCACAAGAAACGAGGACATCTGTCGACAAACGAAGTA
TCGAGCGATTTCACATTCACTTGTCTTTCTCAAAGCGACACGAAACAGCT
AAGGGGGTTCATCAGATGTACACCGGTTTCTACCTTTGCAGATGGAAGAA
CCGGACACACTTGTTTTTTCGAAGCAATACTGTACCTGGCGATCGTCGTG
GGGGTCATGCTGTCCCAGGCGGTCTTGAGAAGGTCTGCCGCGTCCAGCAC
GTGGGGGTGGTTTCCTCCGCCAAGCCCGCGGTCCCGCGCGCCATCTTGCG
GCTCTTGGCCTCGGCGCGCAGTGCATCAGCCACGAGCATGGTTGACACCT
TGGCGTCGAGGAGCTCCCTCCTGTAGATCACCTTGGTGGCTGCGATGATC
CCCATGTCCATGGGCTGGTGTACGCTGGTGCAGTTCGGCGGGTACATCAC
CACCTCCACCTGCCCGACAGGGTCGATCAGATCACCGTGCGACGAGCAGC
CATCCATGAGCAGCAGCACGGGGTCGTGAGTCCAGCGCCGAATGAAGGGT
AAGAAAACCTCCTGCCACCACTTCTTGAAGGTCGGCCCATCAGACCACGC
GTTGCTTTGCGCGAAGTACGGTAGAGGACATTTCCGGCGCCTGAAGCAGC
GCGGGTTCTTGGCCGTGCCGATGATTGCCAGTGGCACTTTCGCAGTGCCA
CTGGCATTCGCGCACATGATCGCAGATATGCGATCCTTGAACTCCATGTT
CTTGCTCCCTCTAGTGGTCTTCCGATCCTCGAACGCGGCAAGATACGTCC
TCCTGGCTATGAGCTTCCACTGGATGCCGGTCTCGTCGACGTTGAAAATG
TTCCTCGCCGGGTACTTCTCGCAAGCAGCGCGGACCTCCTCCATGCCCTC
TTTGATGCGGTCGTGGTCGACGCTGCCGGCCGTCCCATGAAGTTTGTGGC
TGTGGAGGTCGTTGCGCTTCACGAAGTTCTTGCTCCACTTGTCGCCAGCC
TTGAAGTCCTCGAGCCTCTTCCTCACGGAGTCAGTCGTTTTTTCCGAGCC
CAACAGGGTGGCCTTGGCAGAGCGGCCGAACGATCGGATAACGTTGCCGG
TGACGGTGTACTTCGCCATCCGCGCCTTGTTGACGAGGTCCAAAACTAAA
GAATCCAACTGTACAAAGTCAGCAGCAAGCACCACAGGGTTCAAATCGGT
GTGCGCGGGTTAGAACGGTACTGCTTTCACGGATGAATAATATCACAAAG
TTACGCACCAGCACGAAAGTTCACGCCACCCTAGCCAAAATGCACATGCA
GATAAAATGAGCAGTGGAAAAAAATGTGTATAAATTTAAATATGTTTGTG
CCTTTTTTGTCGTGTGTGGGTGGTGCATCAGATGAAAAATGTTCGTGGTG
CTTCCAATGCAGTTGACCGCGCAAAGCATAATCTCAGTGCATAATCCAGA
CTGCTTTGGGGGTCGCTATTTGCACACATGAAGCACTGCGATTTTTCTTG
AAAGTGCGATATCAACCGAGTGTGGTACAAACGGCAGGCTGACAAAAAAA
AAATCAACACCGAGTGGTACAATTCAGGCTGCAAAAAAAAAATCAATACA
TACTCTAGCATACCTCGGGAAAATCCCCCGCCCGAAGGTTCTTCCTTGAG
GTGGCGCTGCTGCGAGTTTTGGCGGCCTGATTCTCTATCTTCGCCCGCTC
GGCCTTGACGTTACGCACCGTGCGCTCCCCGCAGTTGAACTGCTCTGCGA
TCGACTTCTGCGTCCGCGTGCCCTTGTCCAGCAGACGTAGGATCTCCATC
TTGGTGCCGATGTCCATCCGCGTCCGCGAACCAGTCATGTCCGGGTGGTT
GGCTGGTTTCGTTTTTTGGTCTTGCCGTGTCTCCGCTCTCCGTGGCTGAC
CCTTTGCGCTTGCCCTTGCCAGCTGTGGAGCCCTTGCCAGCTGTGGAGGC
ATCACTAGCCTTTTGCTTTTGCTTGGAGGCAATGCACGCATAGCAGATGC
GGGCGGTTTCGAACTCCGCATCTTGGTCTTGTTCCCCACACAGTCCGTGC
AGTCTGCCGCCACACCCTCCGTGACATTGGTGGCCGTCAGGGGCTTCTGG
CGTACGGTCTGGCAGTTGGCACAGTTCACCAGCCGCACAAGGCATGTGTG
CCCCTACTGGTTGGGTCGGTAGGGGTATGCGCTAGGTATTGCTGTTGTGT
AGATCTCTGGAGTGGTTGTGTTGCGGCTTGAATAATGCTGGCGAAGAACT
GGGTGCGTCACACCAAAACCGGCCTTATATAGGGTGCGCGGATGCCCTAA
TAGGCCTTAAATAGGGACTATGCCTGTTTAAGGCCTATGCGGCCTTAAAA
AGGAAGGAAAGTGTGACAGACGATTTCACCGGCCTTAAAAAGGGCCACCG
GCCTTAAATTTGCGGCCTTAAACAGGGACCTCTACTGTATAGTTTATACG
AAGTACTTTGTGGACTTTATACCACTCTGATCAGTATTATATCGCCGGTA
CGGGGCCAGGTCTTGATTAGCAAGTTTGCGTACGCGGGTTCGAGCCTCGG
TATCGCGACGTGTTTTTCGTCCTTTTTTTCACTTTTTTTGTTTCATTTTT
TTTTTCCGACTTTGTTTTTCGATGTTGTTTTTTTCGTTTTTCGAGCTCGT
TTCTTGTTTCCTTCGCTTTGATAACCAAGCTTCTTGAAATTTTCCAAGTA
GGCATTTTAATATCTTGCTGGAACACTTGTTAGACACAACAGAAAAAAAG
GAGGGAAAAATCTCTTGTTTCGCGTTCGTGGGTTCAAAATACTGTACCCT
AATGTTCGCGAGTTTTGCACCAATAACCCAGGACCATCCTTGGGCGGAGC
CCGAGAGGGGACGTTCAAAAGCCATTCCCGGGGTATTCCATCCAATGTCT
CTACTATTTTGCATCCCCTAGGTGCCTCTAGTGATGGGTAACATTTTTGT
TTGCAATACAGCATCTATGCAATGGCTTACCTTTGAAACCGGCCACTTAT
TCCTTATCATCCGTACCGGCCGCCTAATACTGATCAGTGGTGTGTTTTAT
TATACGTATACAATAAATGGGATGACAACACACACCCATACACTCTGAAT
AGTATGCCCCCAACAGCAGCGAAAGACTGCTGATGTTGTCCTGCTGTCCT
GCTGATACTGCTGATGTATCATTGTTTAGTCTAACACTACATCATACAAG
TACGATACTGCTGTATGATGCTTCCTTCGTACATATCGTCCAAGTATGGC
AGAACCTGTTGACCCCGTGTCATACCCTTGTACCAAACTGCTGTCACCTG
TACCTTTTTTTTTTTTTTTGGCCCCGCAACTGCCGCTTATAGACCTGCGG
TACAAATACGATTCCACCGTATGCCAGAATCAGCTCACCGGTGCCGTAAT
TATACATGTACCTCCTCGGCGAATTGATGTGCACTACTATTGTTGTCGAA
GAGGCCTCTAGTTGTCGTACAGCAAGTTGTAATAGTCCCCCCCCCCCCCC
CCCCGTCCACCCCCTTGTGACCGAGTTGCAGGCAGTCATGGATCGGCAGA
AGAAGAGGGCGGCAGAAGGCGATAACGTAGACTACGTTCTGGCGCGGACT
GTGCGGTGCATCCTGCAGTATGACGCGCCGTTGCTATCGAGGCGAAGGGG
GGGGGGAACCAGTGCCAACGCGGGGCTCGCTTCAAAGAGGCCACTGACAT
GTTTTCTGGGATTAAAATGGAGGGCACAACCCCCGTGAAGTTGTCCTGGC
ATTGATGAGGCACTAACACCCTGATAACTGTTACTCCGGAGTAATTTCTG
CAGAGTTAGAGAAAGAGACATGCGGGTGGGGTAGGTAGTTCGCGGAGTTG
GATGTTGGCAAAGCGTTGAAGTCGGTCTGCGGGCTGAAATGTGCGCTAAG
TTGGGCTGCATTGAGTGCAGGGATAATTTGATAGCCAGGTGTTATGGTGA
GGGTGTTGGAACTGCTGTTTTGTGGATGGTATCGTCTGTCCAGGCAGAGG
CATTGTAAGCGATCGACGACAACGCCGGTTTTGCATATTCGTGGCCTAAA
ATTACCGTGCATGTGAGTTAGCCGGCTTTGGGAGGGTCAGCAGGGCGTCG
TTCTACCCATACTTGGCAACTGAGGCACTCGAAGATTTATTGGAGAAAAT
TTGATACGTTCGAGAAATAAACGTTTCGTATCAAACAAAGTCGTACTCCG
AGTATTATTTTTGGAATCGACAAATGTGGGAATATATATATACTCTGGCC
CAGGGCCGAGTAAGCTTTTCCGTGCGTGCTTAAACGTACCTTCGGTGATA
TCGCCCCGTTGGTCCGTGCGATGTACTCGTTGCGACATTGTTGCACACAC
AAACGTTGCACACACCAAAATG
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Coding sequence (CDS) from alignment at P-littoralis_Contig166:274594..281665+

>mRNA_P-littoralis_Contig166.46.1 ID=mRNA_P-littoralis_Contig166.46.1|Name=mRNA_P-littoralis_Contig166.46.1|organism=Pylaiella littoralis U1_48|type=CDS|length=213bp|location=Sequence derived from alignment at P-littoralis_Contig166:274594..281665+ (Pylaiella littoralis U1_48)
ATGGAGGCAGTCATGGATCGGCAGAAGAAGAGGGCGGCAGAAGGCGATAA
CGTAGACTACGTTCTGGCGCGGACTGTGCGGTGCATCCTGCAGTATGACG
CGCCGTTGCTATCGAGGCGAAGGGGGGGGGGAACCAGTGCCAACGCGGGG
CTCGCTTCAAAGAGGCCACTGACATGTTTTCTGGGATTAAAATGGAGGGC
ACAACCCCCGTGA
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