prot_P-littoralis_Contig980.20.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig980.20.1
Unique Nameprot_P-littoralis_Contig980.20.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length69
Homology
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BLAST of mRNA_P-littoralis_Contig980.20.1 vs. uniprot
Match: D8LD43_ECTSI (Small nuclear ribonucleoprotein E n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LD43_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 2.480e-31
Identity = 59/64 (92.19%), Postives = 60/64 (93.75%), Query Frame = 0 
Query:    5 RTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVRPTEGDERKQLGRIMLKGDTITLMQSV 68
            RTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEV   + DERKQLGRIMLKGDTITLMQSV
Sbjct:   33 RTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEV-DMKNDERKQLGRIMLKGDTITLMQSV 95
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BLAST of mRNA_P-littoralis_Contig980.20.1 vs. uniprot
Match: A0A091R4D2_LEPDC (Small nuclear ribonucleoprotein E (Fragment) n=2 Tax=Neognathae TaxID=8825 RepID=A0A091R4D2_LEPDC)

HSP 1 Score: 96.3 bits (238), Expect = 9.940e-25
Identity = 47/68 (69.12%), Postives = 57/68 (83.82%), Query Frame = 0 
Query:    1 LCLQRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVRPTEGDERKQLGRIMLKGDTITLMQSV 68
            + LQR+R+Q+WLYE   MRIEG I+GFDEYMNLVLD+AEE+  ++   RKQLGRIMLKGD ITL+QSV
Sbjct:    8 IILQRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIH-SKTKSRKQLGRIMLKGDNITLLQSV 74
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BLAST of mRNA_P-littoralis_Contig980.20.1 vs. uniprot
Match: A0A7L0F1E5_CORCN (Small nuclear ribonucleoprotein E (Fragment) n=5 Tax=Neognathae TaxID=8825 RepID=A0A7L0F1E5_CORCN)

HSP 1 Score: 96.7 bits (239), Expect = 1.060e-24
Identity = 47/68 (69.12%), Postives = 57/68 (83.82%), Query Frame = 0 
Query:    1 LCLQRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVRPTEGDERKQLGRIMLKGDTITLMQSV 68
            + LQR+R+Q+WLYE   MRIEG I+GFDEYMNLVLD+AEE+  ++   RKQLGRIMLKGD ITL+QSV
Sbjct:   23 IALQRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIH-SKTKSRKQLGRIMLKGDNITLLQSV 89
[Close]
BLAST of mRNA_P-littoralis_Contig980.20.1 vs. uniprot
Match: A0A7K9ER96_BARMA (Small nuclear ribonucleoprotein E (Fragment) n=1 Tax=Baryphthengus martii TaxID=176943 RepID=A0A7K9ER96_BARMA)

HSP 1 Score: 96.3 bits (238), Expect = 1.210e-24
Identity = 47/68 (69.12%), Postives = 57/68 (83.82%), Query Frame = 0 
Query:    1 LCLQRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVRPTEGDERKQLGRIMLKGDTITLMQSV 68
            + LQR+R+Q+WLYE   MRIEG I+GFDEYMNLVLD+AEE+  ++   RKQLGRIMLKGD ITL+QSV
Sbjct:   15 ITLQRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIH-SKTKSRKQLGRIMLKGDNITLLQSV 81
[Close]
BLAST of mRNA_P-littoralis_Contig980.20.1 vs. uniprot
Match: A0A7L4B6E4_9CHAR (Small nuclear ribonucleoprotein E (Fragment) n=4 Tax=Neognathae TaxID=8825 RepID=A0A7L4B6E4_9CHAR)

HSP 1 Score: 96.3 bits (238), Expect = 1.390e-24
Identity = 48/68 (70.59%), Postives = 57/68 (83.82%), Query Frame = 0 
Query:    1 LCLQRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVRPTEGDERKQLGRIMLKGDTITLMQSV 68
            L LQR+R+Q+WLYE   MRIEG I+GFDEYMNLVLD+AEE+  ++   RKQLGRIMLKGD ITL+QSV
Sbjct:   20 LDLQRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIH-SKTKSRKQLGRIMLKGDNITLLQSV 86
[Close]
BLAST of mRNA_P-littoralis_Contig980.20.1 vs. uniprot
Match: A0A7K9AW75_DRONO (Small nuclear ribonucleoprotein E (Fragment) n=2 Tax=Palaeognathae TaxID=8783 RepID=A0A7K9AW75_DRONO)

HSP 1 Score: 96.3 bits (238), Expect = 1.430e-24
Identity = 47/68 (69.12%), Postives = 57/68 (83.82%), Query Frame = 0 
Query:    1 LCLQRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVRPTEGDERKQLGRIMLKGDTITLMQSV 68
            + LQR+R+Q+WLYE   MRIEG I+GFDEYMNLVLD+AEE+  ++   RKQLGRIMLKGD ITL+QSV
Sbjct:   21 IVLQRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIH-SKTKSRKQLGRIMLKGDNITLLQSV 87
[Close]
BLAST of mRNA_P-littoralis_Contig980.20.1 vs. uniprot
Match: A0A7L3LPY6_9CHAR (Small nuclear ribonucleoprotein E (Fragment) n=2 Tax=Neognathae TaxID=8825 RepID=A0A7L3LPY6_9CHAR)

HSP 1 Score: 96.3 bits (238), Expect = 1.430e-24
Identity = 47/68 (69.12%), Postives = 57/68 (83.82%), Query Frame = 0 
Query:    1 LCLQRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVRPTEGDERKQLGRIMLKGDTITLMQSV 68
            + LQR+R+Q+WLYE   MRIEG I+GFDEYMNLVLD+AEE+  ++   RKQLGRIMLKGD ITL+QSV
Sbjct:   21 IILQRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIH-SKTKSRKQLGRIMLKGDNITLLQSV 87
[Close]
BLAST of mRNA_P-littoralis_Contig980.20.1 vs. uniprot
Match: A0A7L0K7W4_CHATO (Small nuclear ribonucleoprotein E (Fragment) n=2 Tax=Anseriformes TaxID=8826 RepID=A0A7L0K7W4_CHATO)

HSP 1 Score: 96.3 bits (238), Expect = 1.510e-24
Identity = 47/68 (69.12%), Postives = 57/68 (83.82%), Query Frame = 0 
Query:    1 LCLQRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVRPTEGDERKQLGRIMLKGDTITLMQSV 68
            + LQR+R+Q+WLYE   MRIEG I+GFDEYMNLVLD+AEE+  ++   RKQLGRIMLKGD ITL+QSV
Sbjct:   23 IILQRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIH-SKTKSRKQLGRIMLKGDNITLLQSV 89
[Close]
BLAST of mRNA_P-littoralis_Contig980.20.1 vs. uniprot
Match: A0A6J3IQD3_SAPAP (Small nuclear ribonucleoprotein E n=2 Tax=Simiiformes TaxID=314293 RepID=A0A6J3IQD3_SAPAP)

HSP 1 Score: 95.9 bits (237), Expect = 1.530e-24
Identity = 47/66 (71.21%), Postives = 56/66 (84.85%), Query Frame = 0 
Query:    3 LQRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVRPTEGDERKQLGRIMLKGDTITLMQSV 68
            LQR+R+Q+WLYE   MRIEG I+GFDEYMNLVLD+AEE+  ++   RKQLGRIMLKGD ITL+QSV
Sbjct:   13 LQRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIH-SKTKSRKQLGRIMLKGDNITLLQSV 77
[Close]
BLAST of mRNA_P-littoralis_Contig980.20.1 vs. uniprot
Match: A0A7K7U820_9CHAR (Small nuclear ribonucleoprotein E (Fragment) n=14 Tax=Neognathae TaxID=8825 RepID=A0A7K7U820_9CHAR)

HSP 1 Score: 96.3 bits (238), Expect = 1.550e-24
Identity = 47/68 (69.12%), Postives = 57/68 (83.82%), Query Frame = 0 
Query:    1 LCLQRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVRPTEGDERKQLGRIMLKGDTITLMQSV 68
            + LQR+R+Q+WLYE   MRIEG I+GFDEYMNLVLD+AEE+  ++   RKQLGRIMLKGD ITL+QSV
Sbjct:   24 IILQRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIH-SKTKSRKQLGRIMLKGDNITLLQSV 90
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig980.20.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LD43_ECTSI2.480e-3192.19Small nuclear ribonucleoprotein E n=2 Tax=Ectocarp... [more]
A0A091R4D2_LEPDC9.940e-2569.12Small nuclear ribonucleoprotein E (Fragment) n=2 T... [more]
A0A7L0F1E5_CORCN1.060e-2469.12Small nuclear ribonucleoprotein E (Fragment) n=5 T... [more]
A0A7K9ER96_BARMA1.210e-2469.12Small nuclear ribonucleoprotein E (Fragment) n=1 T... [more]
A0A7L4B6E4_9CHAR1.390e-2470.59Small nuclear ribonucleoprotein E (Fragment) n=4 T... [more]
A0A7K9AW75_DRONO1.430e-2469.12Small nuclear ribonucleoprotein E (Fragment) n=2 T... [more]
A0A7L3LPY6_9CHAR1.430e-2469.12Small nuclear ribonucleoprotein E (Fragment) n=2 T... [more]
A0A7L0K7W4_CHATO1.510e-2469.12Small nuclear ribonucleoprotein E (Fragment) n=2 T... [more]
A0A6J3IQD3_SAPAP1.530e-2471.21Small nuclear ribonucleoprotein E n=2 Tax=Simiifor... [more]
A0A7K7U820_9CHAR1.550e-2469.12Small nuclear ribonucleoprotein E (Fragment) n=14 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 3..67
e-value: 5.8E-13
score: 59.1
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 7..66
e-value: 2.8E-15
score: 55.8
NoneNo IPR availableGENE3D2.30.30.100coord: 1..68
e-value: 1.1E-26
score: 94.5
NoneNo IPR availablePANTHERPTHR11193:SF0SMALL NUCLEAR RIBONUCLEOPROTEIN Ecoord: 4..67
IPR027078Small nuclear ribonucleoprotein EPANTHERPTHR11193SMALL NUCLEAR RIBONUCLEOPROTEIN Ecoord: 4..67
IPR027078Small nuclear ribonucleoprotein ECDDcd01718Sm_Ecoord: 4..67
e-value: 4.91653E-35
score: 111.492
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 3..66

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig980contigP-littoralis_Contig980:67513..68489 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig980.20.1mRNA_P-littoralis_Contig980.20.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig980 67513..68489 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig980.20.1 ID=prot_P-littoralis_Contig980.20.1|Name=mRNA_P-littoralis_Contig980.20.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=69bp
LCLQRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVRPTEGDERK
QLGRIMLKGDTITLMQSV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR027078snRNP-E
IPR010920LSM_dom_sf