mRNA_P-littoralis_Contig980.20.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig980.20.1
Unique NamemRNA_P-littoralis_Contig980.20.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig980.20.1 vs. uniprot
Match: D8LD43_ECTSI (Small nuclear ribonucleoprotein E n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LD43_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 2.480e-31
Identity = 59/64 (92.19%), Postives = 60/64 (93.75%), Query Frame = 1 
Query:   13 RTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVRPTEGDERKQLGRIMLKGDTITLMQSV 204
            RTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEV   + DERKQLGRIMLKGDTITLMQSV
Sbjct:   33 RTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEV-DMKNDERKQLGRIMLKGDTITLMQSV 95
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BLAST of mRNA_P-littoralis_Contig980.20.1 vs. uniprot
Match: A0A091R4D2_LEPDC (Small nuclear ribonucleoprotein E (Fragment) n=2 Tax=Neognathae TaxID=8825 RepID=A0A091R4D2_LEPDC)

HSP 1 Score: 96.3 bits (238), Expect = 9.940e-25
Identity = 47/68 (69.12%), Postives = 57/68 (83.82%), Query Frame = 1 
Query:    1 LCLQRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVRPTEGDERKQLGRIMLKGDTITLMQSV 204
            + LQR+R+Q+WLYE   MRIEG I+GFDEYMNLVLD+AEE+  ++   RKQLGRIMLKGD ITL+QSV
Sbjct:    8 IILQRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIH-SKTKSRKQLGRIMLKGDNITLLQSV 74
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BLAST of mRNA_P-littoralis_Contig980.20.1 vs. uniprot
Match: A0A7L0F1E5_CORCN (Small nuclear ribonucleoprotein E (Fragment) n=5 Tax=Neognathae TaxID=8825 RepID=A0A7L0F1E5_CORCN)

HSP 1 Score: 96.7 bits (239), Expect = 1.060e-24
Identity = 47/68 (69.12%), Postives = 57/68 (83.82%), Query Frame = 1 
Query:    1 LCLQRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVRPTEGDERKQLGRIMLKGDTITLMQSV 204
            + LQR+R+Q+WLYE   MRIEG I+GFDEYMNLVLD+AEE+  ++   RKQLGRIMLKGD ITL+QSV
Sbjct:   23 IALQRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIH-SKTKSRKQLGRIMLKGDNITLLQSV 89
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BLAST of mRNA_P-littoralis_Contig980.20.1 vs. uniprot
Match: A0A7K9ER96_BARMA (Small nuclear ribonucleoprotein E (Fragment) n=1 Tax=Baryphthengus martii TaxID=176943 RepID=A0A7K9ER96_BARMA)

HSP 1 Score: 96.3 bits (238), Expect = 1.210e-24
Identity = 47/68 (69.12%), Postives = 57/68 (83.82%), Query Frame = 1 
Query:    1 LCLQRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVRPTEGDERKQLGRIMLKGDTITLMQSV 204
            + LQR+R+Q+WLYE   MRIEG I+GFDEYMNLVLD+AEE+  ++   RKQLGRIMLKGD ITL+QSV
Sbjct:   15 ITLQRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIH-SKTKSRKQLGRIMLKGDNITLLQSV 81
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BLAST of mRNA_P-littoralis_Contig980.20.1 vs. uniprot
Match: A0A7L4B6E4_9CHAR (Small nuclear ribonucleoprotein E (Fragment) n=4 Tax=Neognathae TaxID=8825 RepID=A0A7L4B6E4_9CHAR)

HSP 1 Score: 96.3 bits (238), Expect = 1.390e-24
Identity = 48/68 (70.59%), Postives = 57/68 (83.82%), Query Frame = 1 
Query:    1 LCLQRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVRPTEGDERKQLGRIMLKGDTITLMQSV 204
            L LQR+R+Q+WLYE   MRIEG I+GFDEYMNLVLD+AEE+  ++   RKQLGRIMLKGD ITL+QSV
Sbjct:   20 LDLQRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIH-SKTKSRKQLGRIMLKGDNITLLQSV 86
[Close]
BLAST of mRNA_P-littoralis_Contig980.20.1 vs. uniprot
Match: A0A7K9AW75_DRONO (Small nuclear ribonucleoprotein E (Fragment) n=2 Tax=Palaeognathae TaxID=8783 RepID=A0A7K9AW75_DRONO)

HSP 1 Score: 96.3 bits (238), Expect = 1.430e-24
Identity = 47/68 (69.12%), Postives = 57/68 (83.82%), Query Frame = 1 
Query:    1 LCLQRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVRPTEGDERKQLGRIMLKGDTITLMQSV 204
            + LQR+R+Q+WLYE   MRIEG I+GFDEYMNLVLD+AEE+  ++   RKQLGRIMLKGD ITL+QSV
Sbjct:   21 IVLQRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIH-SKTKSRKQLGRIMLKGDNITLLQSV 87
[Close]
BLAST of mRNA_P-littoralis_Contig980.20.1 vs. uniprot
Match: A0A7L3LPY6_9CHAR (Small nuclear ribonucleoprotein E (Fragment) n=2 Tax=Neognathae TaxID=8825 RepID=A0A7L3LPY6_9CHAR)

HSP 1 Score: 96.3 bits (238), Expect = 1.430e-24
Identity = 47/68 (69.12%), Postives = 57/68 (83.82%), Query Frame = 1 
Query:    1 LCLQRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVRPTEGDERKQLGRIMLKGDTITLMQSV 204
            + LQR+R+Q+WLYE   MRIEG I+GFDEYMNLVLD+AEE+  ++   RKQLGRIMLKGD ITL+QSV
Sbjct:   21 IILQRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIH-SKTKSRKQLGRIMLKGDNITLLQSV 87
[Close]
BLAST of mRNA_P-littoralis_Contig980.20.1 vs. uniprot
Match: A0A7L0K7W4_CHATO (Small nuclear ribonucleoprotein E (Fragment) n=2 Tax=Anseriformes TaxID=8826 RepID=A0A7L0K7W4_CHATO)

HSP 1 Score: 96.3 bits (238), Expect = 1.510e-24
Identity = 47/68 (69.12%), Postives = 57/68 (83.82%), Query Frame = 1 
Query:    1 LCLQRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVRPTEGDERKQLGRIMLKGDTITLMQSV 204
            + LQR+R+Q+WLYE   MRIEG I+GFDEYMNLVLD+AEE+  ++   RKQLGRIMLKGD ITL+QSV
Sbjct:   23 IILQRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIH-SKTKSRKQLGRIMLKGDNITLLQSV 89
[Close]
BLAST of mRNA_P-littoralis_Contig980.20.1 vs. uniprot
Match: A0A6J3IQD3_SAPAP (Small nuclear ribonucleoprotein E n=2 Tax=Simiiformes TaxID=314293 RepID=A0A6J3IQD3_SAPAP)

HSP 1 Score: 95.9 bits (237), Expect = 1.530e-24
Identity = 47/66 (71.21%), Postives = 56/66 (84.85%), Query Frame = 1 
Query:    7 LQRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVRPTEGDERKQLGRIMLKGDTITLMQSV 204
            LQR+R+Q+WLYE   MRIEG I+GFDEYMNLVLD+AEE+  ++   RKQLGRIMLKGD ITL+QSV
Sbjct:   13 LQRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIH-SKTKSRKQLGRIMLKGDNITLLQSV 77
[Close]
BLAST of mRNA_P-littoralis_Contig980.20.1 vs. uniprot
Match: A0A7K7U820_9CHAR (Small nuclear ribonucleoprotein E (Fragment) n=14 Tax=Neognathae TaxID=8825 RepID=A0A7K7U820_9CHAR)

HSP 1 Score: 96.3 bits (238), Expect = 1.550e-24
Identity = 47/68 (69.12%), Postives = 57/68 (83.82%), Query Frame = 1 
Query:    1 LCLQRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVRPTEGDERKQLGRIMLKGDTITLMQSV 204
            + LQR+R+Q+WLYE   MRIEG I+GFDEYMNLVLD+AEE+  ++   RKQLGRIMLKGD ITL+QSV
Sbjct:   24 IILQRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIH-SKTKSRKQLGRIMLKGDNITLLQSV 90
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig980.20.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LD43_ECTSI2.480e-3192.19Small nuclear ribonucleoprotein E n=2 Tax=Ectocarp... [more]
A0A091R4D2_LEPDC9.940e-2569.12Small nuclear ribonucleoprotein E (Fragment) n=2 T... [more]
A0A7L0F1E5_CORCN1.060e-2469.12Small nuclear ribonucleoprotein E (Fragment) n=5 T... [more]
A0A7K9ER96_BARMA1.210e-2469.12Small nuclear ribonucleoprotein E (Fragment) n=1 T... [more]
A0A7L4B6E4_9CHAR1.390e-2470.59Small nuclear ribonucleoprotein E (Fragment) n=4 T... [more]
A0A7K9AW75_DRONO1.430e-2469.12Small nuclear ribonucleoprotein E (Fragment) n=2 T... [more]
A0A7L3LPY6_9CHAR1.430e-2469.12Small nuclear ribonucleoprotein E (Fragment) n=2 T... [more]
A0A7L0K7W4_CHATO1.510e-2469.12Small nuclear ribonucleoprotein E (Fragment) n=2 T... [more]
A0A6J3IQD3_SAPAP1.530e-2471.21Small nuclear ribonucleoprotein E n=2 Tax=Simiifor... [more]
A0A7K7U820_9CHAR1.550e-2469.12Small nuclear ribonucleoprotein E (Fragment) n=14 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig980contigP-littoralis_Contig980:67513..68489 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LD43
Preferred nameSNRPE
PFAMsLSM
Model size207
Max annot lvl2759|Eukaryota
KEGG koko:K11097,ko:K12272,ko:K18754
KEGG TC3.A.5.8
KEGG Pathwayko03040,ko03060,map03040,map03060
KEGG ModuleM00351,M00352,M00354,M00355,M00398
Hectar predicted targeting categoryother localisation
GOsGO:0000245,GO:0000375,GO:0000377,GO:0000387,GO:0000395,GO:0000398,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005682,GO:0005683,GO:0005684,GO:0005685,GO:0005686,GO:0005687,GO:0005689,GO:0005697,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006353,GO:0006366,GO:0006369,GO:0006376,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006810,GO:0006913,GO:0008150,GO:0008152,GO:0008334,GO:0008380,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0018130,GO:0019438,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031974,GO:0031981,GO:0032501,GO:0032774,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034708,GO:0034709,GO:0034715,GO:0034719,GO:0035770,GO:0036464,GO:0042303,GO:0042633,GO:0043021,GO:0043170,GO:0043186,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045292,GO:0045495,GO:0046483,GO:0046540,GO:0046907,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060293,GO:0065003,GO:0070013,GO:0070990,GO:0071004,GO:0071007,GO:0071010,GO:0071011,GO:0071013,GO:0071014,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097525,GO:0097526,GO:0097659,GO:0120114,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234,GO:1990446,GO:1990904
Exons2
Evalue4.07e-32
EggNOG OGsCOG1958@1|root,KOG1774@2759|Eukaryota
Descriptionspliceosomal snRNP assembly
Cds size207
COG categoryK
BRITEko00000,ko00001,ko00002,ko02044,ko03019,ko03032,ko03041,ko04031
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791903.7602751-CDS-P-littoralis_Contig980:67512..676491680791903.7602751-CDS-P-littoralis_Contig980:67512..67649Pylaiella littoralis U1_48CDSP-littoralis_Contig980 67513..67649 +
1680791903.7776003-CDS-P-littoralis_Contig980:68419..684891680791903.7776003-CDS-P-littoralis_Contig980:68419..68489Pylaiella littoralis U1_48CDSP-littoralis_Contig980 68420..68489 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig980.20.1prot_P-littoralis_Contig980.20.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig980 67513..68489 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig980.20.1

>prot_P-littoralis_Contig980.20.1 ID=prot_P-littoralis_Contig980.20.1|Name=mRNA_P-littoralis_Contig980.20.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=69bp
LCLQRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVRPTEGDERK
QLGRIMLKGDTITLMQSV*
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mRNA from alignment at P-littoralis_Contig980:67513..68489+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig980.20.1 ID=mRNA_P-littoralis_Contig980.20.1|Name=mRNA_P-littoralis_Contig980.20.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=977bp|location=Sequence derived from alignment at P-littoralis_Contig980:67513..68489+ (Pylaiella littoralis U1_48)
TTGTGTTTGCAGCGAACGCGGGTGCAAATCTGGCTGTACGAGAACACCAA
GATGCGGATAGAAGGACAGATCCTCGGCTTCGACGAGTACATGAACCTGG
TATTGGACGAAGCGGAAGAGGTAAGACCAACCGAAGGGTTAAGTTACTGT
TGCTGCTGTTGTTGTTGACGACACCAGTCACGTCAAGGAAGCTCATCCCA
AGATTTTCGATTCCGGTATGATAAGGTACGTTGCTTCCTTCTCGTTGGCA
TCAGGGGAGATAGGCGTCGACAGCTTGAAGAGCGTGTCACGCCACCCGTC
TTTCCGAACAACATCATGAACACTTTGTCGCCTTTTACCCCTCTCCTTGG
TTGTTGCTCGAGGTCGAGCTTGTTGTTGTTGTTGTTGCTGTTGCTGTTGT
TGTTGTTGTTGTTGTTGCTGTTGATGTTGCTGGTATTGTTGTTGCTGTTG
TTGTTTTTGTTGTTTTGTTGTTTTGCGTACCATCCGACAGCGAGCGCGGT
TCAGTTTTCACTGCAGACTCATGACTACTTTTCGTGTGTGATTATCGAAG
AGGCGTTTGGCACCGTGAAAACGTCAAGTGACCGTGCGTGCGGAGCGCAG
GGCGACCTGTGGGCGAGACACAGCCGTTGGTGTGATTTTGTCGATTAGCT
CCTCAGGCGCAAGACCAAGTTTTGCACGGTGTTGCCACTGCCTTTTTGTT
GTTTTCAGGTGGGCACGATGGGGAGGGGGAACCTTAAGCGTAAAACCAAC
TTTTGCGCGGTGTTGCAGCCTGTCTCTTTGTTTTTTCAGGCGGGCACTAG
GGGGAACCTCAACCTTTGTGGCAAGCAAAGCAAAGCAACGCAAAGCTAAC
CACGGTAACCGTTGTGTGATGTTGCTCTCGCGTGTACTGCCAGGTGGATA
TGAAGAGCGACGAGCGCAAACAGCTAGGCCGAATCATGCTCAAGGGAGAC
ACCATCACCCTCATGCAGAGCGTGTAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig980:67513..68489+

>mRNA_P-littoralis_Contig980.20.1 ID=mRNA_P-littoralis_Contig980.20.1|Name=mRNA_P-littoralis_Contig980.20.1|organism=Pylaiella littoralis U1_48|type=CDS|length=207bp|location=Sequence derived from alignment at P-littoralis_Contig980:67513..68489+ (Pylaiella littoralis U1_48)
TTGTGTTTGCAGCGAACGCGGGTGCAAATCTGGCTGTACGAGAACACCAA
GATGCGGATAGAAGGACAGATCCTCGGCTTCGACGAGTACATGAACCTGG
TATTGGACGAAGCGGAAGAGGTAAGACCAACCGAAGGCGACGAGCGCAAA
CAGCTAGGCCGAATCATGCTCAAGGGAGACACCATCACCCTCATGCAGAG
CGTGTAA
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