prot_P-littoralis_Contig86.46.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-littoralis_Contig86.46.1
Unique Name	prot_P-littoralis_Contig86.46.1
Type	polypeptide
Organism	Pylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length	146

Homology

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BLAST of mRNA_P-littoralis_Contig86.46.1 vs. uniprot
Match: D8LTD9_ECTSI (RNA-binding region-containing protein (RNP-1) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTD9_ECTSI)

HSP 1 Score: 51.6 bits (122), Expect = 9.400e-5
Identity = 63/154 (40.91%), Postives = 76/154 (49.35%), Query Frame = 0

Query:    3 RGSKSGDLGPLVEKDAYGSECSAEDFKDTRSASSSSDVKSPAA--------STVEVVP----KENSARSP-PPDKTEKAPTASEATIECQ-ENPAQQTTNATEAELALSGAPSEPGAKTSSDGGEGKDPRTELGEVEMEESGSYVDDFAPDNDE 142
            RGSK  DLGPLVE +  GSECS  D   T+S  S  D     A        S VE V     +ENS R+P P D  E    A E T + + E PA QTT A +   A       P A + +D G+G      LGE  +E SGSY DDF  D++E
Sbjct:  835 RGSKVDDLGPLVEAEGDGSECSVRDGAGTQSVPSVVDADGADAADEHTGNQSEVEPVEVAASEENSIRNPHPTDSHENMALAGEITGDREKEEPAIQTTKAVKQAQA-------PPADSQNDYGQGG-----LGETGIEASGSYADDFTVDDNE 976

The following BLAST results are available for this feature:

BLAST of mRNA_P-littoralis_Contig86.46.1 vs. uniprot

BLAST of mRNA_P-littoralis_Contig86.46.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D8LTD9_ECTSI	9.400e-5	40.91	RNA-binding region-containing protein (RNP-1) n=1 ...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 72..94
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 109..125
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..146
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 20..34

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-littoralis_Contig86	contig	P-littoralis_Contig86:115617..116370 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Pylaiella littoralis U1_48 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-littoralis_Contig86.46.1	mRNA_P-littoralis_Contig86.46.1	Pylaiella littoralis U1_48	mRNA	P-littoralis_Contig86 115617..116370 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-littoralis_Contig86.46.1 ID=prot_P-littoralis_Contig86.46.1|Name=mRNA_P-littoralis_Contig86.46.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=146bp
PTRGSKSGDLGPLVEKDAYGSECSAEDFKDTRSASSSSDVKSPAASTVEV
VPKENSARSPPPDKTEKAPTASEATIECQENPAQQTTNATEAELALSGAP
SEPGAKTSSDGGEGKDPRTELGEVEMEESGSYVDDFAPDNDEGKMS