mRNA_P-littoralis_Contig86.46.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig86.46.1
Unique NamemRNA_P-littoralis_Contig86.46.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig86.46.1 vs. uniprot
Match: D8LTD9_ECTSI (RNA-binding region-containing protein (RNP-1) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTD9_ECTSI)

HSP 1 Score: 51.6 bits (122), Expect = 9.400e-5
Identity = 63/154 (40.91%), Postives = 76/154 (49.35%), Query Frame = 1 
Query:    7 RGSKSGDLGPLVEKDAYGSECSAEDFKDTRSASSSSDVKSPAA--------STVEVVP----KENSARSP-PPDKTEKAPTASEATIECQ-ENPAQQTTNATEAELALSGAPSEPGAKTSSDGGEGKDPRTELGEVEMEESGSYVDDFAPDNDE 426
            RGSK  DLGPLVE +  GSECS  D   T+S  S  D     A        S VE V     +ENS R+P P D  E    A E T + + E PA QTT A +   A       P A + +D G+G      LGE  +E SGSY DDF  D++E
Sbjct:  835 RGSKVDDLGPLVEAEGDGSECSVRDGAGTQSVPSVVDADGADAADEHTGNQSEVEPVEVAASEENSIRNPHPTDSHENMALAGEITGDREKEEPAIQTTKAVKQAQA-------PPADSQNDYGQGG-----LGETGIEASGSYADDFTVDDNE 976
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig86.46.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LTD9_ECTSI9.400e-540.91RNA-binding region-containing protein (RNP-1) n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig86contigP-littoralis_Contig86:115617..116370 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LTD9
PFAMsHA2,Helicase_C,OB_NTP_bind,RRM_1,S1
Model size438
Max annot lvl2759|Eukaryota
KEGG koko:K12818,ko:K12837
KEGG Pathwayko03040,map03040
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.54e-05
EggNOG OGsKOG0120@1|root,KOG0120@2759|Eukaryota
EC3.6.4.13
Descriptionpre-mRNA 3'-splice site binding
Cds size438
COG categoryJ
BRITEko00000,ko00001,ko01000,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791730.8737867-CDS-P-littoralis_Contig86:115616..1157841680791730.8737867-CDS-P-littoralis_Contig86:115616..115784Pylaiella littoralis U1_48CDSP-littoralis_Contig86 115617..115784 +
1680791730.8901248-CDS-P-littoralis_Contig86:116100..1163701680791730.8901248-CDS-P-littoralis_Contig86:116100..116370Pylaiella littoralis U1_48CDSP-littoralis_Contig86 116101..116370 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig86.46.1prot_P-littoralis_Contig86.46.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig86 115617..116370 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig86.46.1

>prot_P-littoralis_Contig86.46.1 ID=prot_P-littoralis_Contig86.46.1|Name=mRNA_P-littoralis_Contig86.46.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=146bp
PTRGSKSGDLGPLVEKDAYGSECSAEDFKDTRSASSSSDVKSPAASTVEV
VPKENSARSPPPDKTEKAPTASEATIECQENPAQQTTNATEAELALSGAP
SEPGAKTSSDGGEGKDPRTELGEVEMEESGSYVDDFAPDNDEGKMS
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mRNA from alignment at P-littoralis_Contig86:115617..116370+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig86.46.1 ID=mRNA_P-littoralis_Contig86.46.1|Name=mRNA_P-littoralis_Contig86.46.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=754bp|location=Sequence derived from alignment at P-littoralis_Contig86:115617..116370+ (Pylaiella littoralis U1_48)
CCGACGAGGGGCTCAAAGAGTGGCGACCTTGGCCCGCTGGTTGAAAAAGA
CGCATACGGAAGCGAGTGCTCTGCGGAGGACTTCAAAGATACTCGATCGG
CGTCAAGCTCTTCCGACGTAAAAAGTCCCGCGGCCTCGACTGTCGAGGTC
GTTCCGAAAGAGAACTCGGTAAGGAATCGAACATTCACGTTTCGTCGAGC
GGGCCACAATGACTTTGCTGGCGACCGCGCCGGTTCTGCCGGCGGTTTTG
GTTGGAGGGGGCGGGGCAACACTCACCCGGAACGCGGGGATTTCTCGGAG
CGAGGGGAATATGCTCGACTCACAGATCGCATCGACCACGAGCGACATAC
TCGAAATGTAGAATTCCACGAAATCCCGCCGAATAAGATTTGTAATCGTT
AGTGACAGCAATGCATTTCCATACCCTCCCAATGTCTTCCTGCGTGGTGT
GCTCCTGTTTCTGGTGTATGATGTGTGAATACAGGCCAGGAGTCCGCCCC
CGGACAAAACCGAGAAGGCCCCCACAGCCAGCGAGGCTACCATCGAGTGC
CAGGAGAATCCTGCACAACAAACGACGAATGCAACAGAAGCTGAGCTAGC
TTTGTCAGGAGCGCCTTCCGAGCCCGGAGCTAAGACCAGCAGCGACGGTG
GCGAAGGAAAGGACCCCCGGACAGAGCTTGGGGAGGTGGAGATGGAAGAA
AGTGGCTCCTATGTCGACGATTTCGCCCCCGACAACGACGAGGGCAAAAT
GTCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig86:115617..116370+

>mRNA_P-littoralis_Contig86.46.1 ID=mRNA_P-littoralis_Contig86.46.1|Name=mRNA_P-littoralis_Contig86.46.1|organism=Pylaiella littoralis U1_48|type=CDS|length=438bp|location=Sequence derived from alignment at P-littoralis_Contig86:115617..116370+ (Pylaiella littoralis U1_48)
CCGACGAGGGGCTCAAAGAGTGGCGACCTTGGCCCGCTGGTTGAAAAAGA
CGCATACGGAAGCGAGTGCTCTGCGGAGGACTTCAAAGATACTCGATCGG
CGTCAAGCTCTTCCGACGTAAAAAGTCCCGCGGCCTCGACTGTCGAGGTC
GTTCCGAAAGAGAACTCGGCCAGGAGTCCGCCCCCGGACAAAACCGAGAA
GGCCCCCACAGCCAGCGAGGCTACCATCGAGTGCCAGGAGAATCCTGCAC
AACAAACGACGAATGCAACAGAAGCTGAGCTAGCTTTGTCAGGAGCGCCT
TCCGAGCCCGGAGCTAAGACCAGCAGCGACGGTGGCGAAGGAAAGGACCC
CCGGACAGAGCTTGGGGAGGTGGAGATGGAAGAAAGTGGCTCCTATGTCG
ACGATTTCGCCCCCGACAACGACGAGGGCAAAATGTCG
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