prot_P-littoralis_Contig670.20.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig670.20.1
Unique Nameprot_P-littoralis_Contig670.20.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length229
Homology
BLAST of mRNA_P-littoralis_Contig670.20.1 vs. uniprot
Match: A0A6H5JT49_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT49_9PHAE)

HSP 1 Score: 320 bits (821), Expect = 1.560e-108
Identity = 165/234 (70.51%), Postives = 189/234 (80.77%), Query Frame = 0
Query:    1 MTREVALLILSFIVNCGGFTIRSNSRKLT------CFPALDICGRGGGSRHRSSSSGVVQMSISEMIGADVESGGVFDPLGFSEDEPSLFRRRAVELKHGRVAMLAVTGIVVQTFVRFPGFPPFPVSNAARPLAVLKGLMSDKTNSVLLALLVIGALELTIGKQDYVDRAPGELGEFGTFAKPVDEDEWFKVQMAELKHGRLAMLGVVGCFVQEAVTGQGPVEQLLLGNISPFS 228
            M RE+ L++L  I  CGGF +   +R+L       C+      G    +R RSSS+  ++MSI EMIGADVESGG+FDPLGFS+DEPSLFRRRAVELKHGRVAMLAVTGI+VQ+FV FPGFPPFPVSN ARPLAVLKGL+S + N+V+L LL  G +ELTIGKQDYVDRAPGELGEFG FAKPVD++EW KVQMAELKHGRLAMLGVVGC VQE VTG+GPVEQLL GNI PF+
Sbjct:    1 MGREITLMMLGLIAGCGGFAVPPTARRLRPNAARGCWRRPSQNGCHSSTRSRSSSAARIEMSIREMIGADVESGGLFDPLGFSKDEPSLFRRRAVELKHGRVAMLAVTGILVQSFVHFPGFPPFPVSNPARPLAVLKGLLSTEGNNVVLFLLGTGVVELTIGKQDYVDRAPGELGEFGAFAKPVDKEEWDKVQMAELKHGRLAMLGVVGCLVQELVTGEGPVEQLLNGNIFPFA 234          
BLAST of mRNA_P-littoralis_Contig670.20.1 vs. uniprot
Match: A0A835ZIK7_9STRA (Chlorophyll a/b-binding protein domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIK7_9STRA)

HSP 1 Score: 198 bits (503), Expect = 6.790e-61
Identity = 96/182 (52.75%), Postives = 136/182 (74.73%), Query Frame = 0
Query:   46 RSSSSGVVQMSISEMIGADVESGGVFDPLGFSEDEPSLFRRRAVELKHGRVAMLAVTGIVVQTFVRFPGFPPFPVSNAARPLAVLKGLMSDKTNSVLLALLVIGALELTIGKQDYVDRAPGELGEFGTFAKPVDEDEWFKVQMAELKHGRLAMLGVVGCFVQEAVTGQGPVEQLLLGNISPF 227
            RS+++ V +M++ +M+GAD+E+ GV+DPL  S+D+ +LF+ R VELKHGRVAMLA  G++VQ+F   P     PV +  RPLA L  +++++  +     L +GA EL+IGKQDY ++APG++  FG F KP DEDEW K+Q+ ELK+GRLAM+  +G FVQEA+TGQGP+EQL +G+ISPF
Sbjct:    4 RSAAAAVTRMAVQDMLGADIETSGVWDPLRLSKDDGNLFKYREVELKHGRVAMLATLGVLVQSFNHLPD----PVFSNPRPLAALSQILAERPVAFWQIFLAVGAFELSIGKQDYENKAPGDIATFGDFVKPSDEDEWEKIQLRELKNGRLAMVASIGMFVQEALTGQGPIEQLQVGHISPF 181          
BLAST of mRNA_P-littoralis_Contig670.20.1 vs. uniprot
Match: A0A835ZAI4_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAI4_9STRA)

HSP 1 Score: 191 bits (486), Expect = 6.160e-58
Identity = 95/176 (53.98%), Postives = 127/176 (72.16%), Query Frame = 0
Query:   52 VVQMSISEMIGADVESGGVFDPLGFSEDEPSLFRRRAVELKHGRVAMLAVTGIVVQTFVRFPGFPPFPVSNAARPLAVLKGLMSDKTNSVLLALLVIGALELTIGKQDYVDRAPGELGEFGTFAKPVDEDEWFKVQMAELKHGRLAMLGVVGCFVQEAVTGQGPVEQLLLGNISPF 227
            V +MS+ +M+G DVE+GG+FDPLGFS+DE SLFRRRAVELKHGR+ MLA  G++VQT+V  P      V +  RP+  L  ++  +  + +  LL IG LELT G QDY ++APG+LG FG   KP D  E  ++Q+ ELK+GRLAM+G++G  VQE +T QGP+EQLL+G+ SPF
Sbjct:   38 VTRMSVEDMVGIDVETGGLFDPLGFSKDEASLFRRRAVELKHGRICMLATFGVLVQTYVHLPDA----VFSNPRPIGALLQVLDQRPVAAIQILLAIGLLELTAGAQDYANKAPGDLGRFGDAFKPDDAGELAELQLKELKNGRLAMMGIMGMLVQEGLTKQGPIEQLLVGHTSPF 209          
BLAST of mRNA_P-littoralis_Contig670.20.1 vs. uniprot
Match: W7U405_9STRA (Light-harvesting protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U405_9STRA)

HSP 1 Score: 178 bits (451), Expect = 8.810e-53
Identity = 93/175 (53.14%), Postives = 126/175 (72.00%), Query Frame = 0
Query:   53 VQMSISEMIGADVESGGVFDPLGFSEDEPSLFRRRAVELKHGRVAMLAVTGIVVQTFVRFPGFPPFPVSNAARPLAVLKGLMSDKTNSVLLALLVIGALELTIGKQDYVDRAPGELGEFGTFAKPVDEDEWFKVQMAELKHGRLAMLGVVGCFVQEAVTGQGPVEQLLLGNISPF 227
            V+M+++EMIG+DVE+ GVFDPLG ++DE SL+R R +ELKHGRVAMLA  G +VQ+F   P      V +  RPLA L  + S++  +     L IGA+ELTIGKQD  +RAPG++G FG    P D +++  +Q+ ELK+GRLAM+ ++G FVQE +TGQGP+EQLL G+ SPF
Sbjct:   30 VRMAVNEMIGSDVETNGVFDPLGLAKDEASLYRSRLIELKHGRVAMLACLGTLVQSFYHLPD----EVFSNPRPLAALAQVYSERPVAFWQIFLAIGAIELTIGKQDTANRAPGDVG-FGAAFIPDDAEDFAALQLKELKNGRLAMMAIIGQFVQEKLTGQGPIEQLLEGHFSPF 199          
BLAST of mRNA_P-littoralis_Contig670.20.1 vs. uniprot
Match: A0A0G4GDB0_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GDB0_VITBC)

HSP 1 Score: 174 bits (440), Expect = 5.150e-51
Identity = 95/176 (53.98%), Postives = 124/176 (70.45%), Query Frame = 0
Query:   54 QMSISEMIGADVESGGVFDPLGFSEDEPSLFRRRAVELKHGRVAMLAVTGIVVQTF-VRFPGFPPFPVSNAARPLAVLKGLMSDKTNSVLLALLVIGALELTIGKQDYVDRAPGELGEFGTFAKPVDEDEWFKVQMAELKHGRLAMLGVVGCFVQEAVTGQGPVEQLLLGNISPFS 228
            +MS+ EMIGADVE+GGVFDPL FSEDE SLFRRRAVELKHGR+AMLA  G  VQ+  V  P     PV +  RPL+ L  +++++  +    +  I A+EL  G+QDY ++APG+LG FG   K  D +E+ K Q+ ELK+GRLAM+G++G  VQE +TGQ   EQ+  GNI+PFS
Sbjct:   43 KMSVEEMIGADVETGGVFDPLKFSEDEASLFRRRAVELKHGRIAMLACLGYFVQSAGVHLPD----PVFSEPRPLSALTKVLTERPWAAAQIVAAIAAIELGPGRQDYENKAPGDLGYFGDSFKNSDPEEFRKDQLRELKNGRLAMIGIMGMMVQEGLTGQSVWEQIGSGNINPFS 214          
BLAST of mRNA_P-littoralis_Contig670.20.1 vs. uniprot
Match: W7TRI0_9STRA (Light-harvesting protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TRI0_9STRA)

HSP 1 Score: 171 bits (433), Expect = 1.770e-50
Identity = 91/173 (52.60%), Postives = 122/173 (70.52%), Query Frame = 0
Query:   55 MSISEMIGADVESGGVFDPLGFSEDEPSLFRRRAVELKHGRVAMLAVTGIVVQTFVRFPGFPPFPVSNAARPLAVLKGLMSDKTNSVLLALLVIGALELTIGKQDYVDRAPGELGEFGTFAKPVDEDEWFKVQMAELKHGRLAMLGVVGCFVQEAVTGQGPVEQLLLGNISPF 227
            MS S+MIG DVE+GG+FDPLGFS+DE SL++ R VELKHGRVAMLA  G +VQ++   P      V +  RPL  L  L+S++  ++L  ++ I  +E+T GKQD  + APG+LG FG   KP  E E   VQ+ ELK+GRLAM+ ++G +VQE +TGQGP+EQ+  G+ISPF
Sbjct:    1 MSASDMIGIDVETGGLFDPLGFSKDEQSLYKYRQVELKHGRVAMLACLGTLVQSYTHLPD----DVFSNPRPLGALGQLLSERPLAILQIVIAITLIEVTSGKQD-PELAPGQLGRFGEAFKPEGEAEMAAVQLKELKNGRLAMVAIIGQWVQELLTGQGPIEQITSGHISPF 168          
BLAST of mRNA_P-littoralis_Contig670.20.1 vs. uniprot
Match: A0A6H5KVZ6_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVZ6_9PHAE)

HSP 1 Score: 168 bits (426), Expect = 9.800e-49
Identity = 89/174 (51.15%), Postives = 118/174 (67.82%), Query Frame = 0
Query:   56 SISEMIGADVESGGVFDPLGFSEDEPSLFRRRAVELKHGRVAMLAVTGIVVQTFVRFPGFPPFPVSNAARPLAVLKGLMSDKTNSVLLALLVIGALELTIGKQDY--VDRAPGELGEFGTFAKPVDEDEWFKVQMAELKHGRLAMLGVVGCFVQEAVTGQGPVEQLLLGNISPF 227
            ++SEM+GA  E+GGVFDPLG + DE SL+RRR  ELKHGRV MLA  G++VQ+FV+FP       SN  RPL  L  +  ++   +L  + ++G +ELTIG++DY   +  PG+LGE    A+P D   W + Q+ ELKHGRLA LG+ G   QE VT +GPVEQLL G+I+PF
Sbjct:   52 AVSEMVGASEETGGVFDPLGLATDETSLYRRRVAELKHGRVCMLATVGVLVQSFVQFPDPDRSAFSNT-RPLGALFQVWRERPVILLGIVALMGLIELTIGREDYGSSEAEPGKLGELWQTARPEDPQLWRRRQLQELKHGRLASLGITGMLAQELVTHEGPVEQLLKGDINPF 224          
BLAST of mRNA_P-littoralis_Contig670.20.1 vs. uniprot
Match: D8LBT8_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBT8_ECTSI)

HSP 1 Score: 164 bits (416), Expect = 5.970e-48
Identity = 87/170 (51.18%), Postives = 115/170 (67.65%), Query Frame = 0
Query:   60 MIGADVESGGVFDPLGFSEDEPSLFRRRAVELKHGRVAMLAVTGIVVQTFVRFPGFPPFPVSNAARPLAVLKGLMSDKTNSVLLALLVIGALELTIGKQDY--VDRAPGELGEFGTFAKPVDEDEWFKVQMAELKHGRLAMLGVVGCFVQEAVTGQGPVEQLLLGNISPF 227
            M+GA  E+GGVFDPLG + DE SL+RRR  ELKHGRV MLA  G++VQ+FV+FP       SN  RPL  L  +  ++   +L  + ++G +ELTIG++DY   +  PG+LG+F   A+P D   W + Q+ ELKHGRLA LG+ G   QE VT +GPVEQLL G+I+PF
Sbjct:    1 MVGASEETGGVFDPLGLATDETSLYRRRVAELKHGRVCMLATVGVLVQSFVQFPDPDRSAFSNT-RPLGALFQVWRERPVILLGIVALMGLIELTIGREDYGSSEAEPGKLGDFWQAARPEDPQLWRRRQLQELKHGRLASLGITGMLAQELVTHEGPVEQLLKGDINPF 169          
BLAST of mRNA_P-littoralis_Contig670.20.1 vs. uniprot
Match: D5KBP8_ELYCH (Light harvesting complex protein 3 (Fragment) n=4 Tax=Eukaryota TaxID=2759 RepID=D5KBP8_ELYCH)

HSP 1 Score: 162 bits (409), Expect = 3.130e-47
Identity = 80/148 (54.05%), Postives = 106/148 (71.62%), Query Frame = 0
Query:   71 FDPLGFSEDEPSLFRRRAVELKHGRVAMLAVTGIVVQTFVRFPGFPPFPVSNAARPLAVLKGLMSDKTNSVLLALLVIGALELTIGKQDYVDRAPGELGEFGTFAKPVDEDEWFKVQMAELKHGRLAMLGVVGCFVQEAVTGQGPVEQ 218
            +DPLGFS+DE SLFRRR VELKHGR+ MLA  G+ VQ  +  P     PV +  RP+  L  + +++  ++   +L IGA+EL+IGKQDY ++APG+LG FG FAKP D  EW KVQ+ ELK+GRLAM+ ++G  VQE +T QGP+EQ
Sbjct:    1 WDPLGFSKDEASLFRRRVVELKHGRICMLATLGVFVQNSIHLPD----PVFSNPRPIGALLQVFAERPIAIWQIILAIGAIELSIGKQDYENKAPGDLGSFGDFAKPSDPIEWEKVQLRELKNGRLAMMAIMGMLVQEGLTKQGPLEQ 144          
BLAST of mRNA_P-littoralis_Contig670.20.1 vs. uniprot
Match: A0A835Z571_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z571_9STRA)

HSP 1 Score: 163 bits (412), Expect = 8.080e-47
Identity = 88/175 (50.29%), Postives = 125/175 (71.43%), Query Frame = 0
Query:   53 VQMSISEMIGADVESGGVFDPLGFSEDEPSLFRRRAVELKHGRVAMLAVTGIVVQTFVRFPGFPPFPVSNAARPLAVLKGLMSDKTNSVLLALLVIGALELTIGKQDYVDRAPGELGEFGTFAKPVDEDEWFKVQMAELKHGRLAMLGVVGCFVQEAVTGQGPVEQLLLGNISPF 227
            ++MS+ E+IGAD E+GGV+DP GF++D+ +L++ R VELKHGRVAMLA  G++VQ+FV  P  P F  ++ ARP      L S +  ++    L  GA+EL + KQD  ++APG+LG FG +  P  E+E   +Q+ ELK+GRLAM+ +VG FVQE +TGQGP+EQ+L G++SPF
Sbjct:   38 LRMSVEELIGADTETGGVWDPAGFAKDDAALYKYREVELKHGRVAMLATLGVLVQSFVTLPD-PVF--ADGARPQTAAFELASSRPEALAQIFLACGAVELLVLKQD-PEKAPGDLG-FGAY--PDTEEELEVLQLKELKNGRLAMMAIVGMFVQEKLTGQGPIEQILAGHVSPF 205          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig670.20.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JT49_9PHAE1.560e-10870.51LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A835ZIK7_9STRA6.790e-6152.75Chlorophyll a/b-binding protein domain-containing ... [more]
A0A835ZAI4_9STRA6.160e-5853.98Light harvesting complex protein n=1 Tax=Tribonema... [more]
W7U405_9STRA8.810e-5353.14Light-harvesting protein n=2 Tax=Monodopsidaceae T... [more]
A0A0G4GDB0_VITBC5.150e-5153.98Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
W7TRI0_9STRA1.770e-5052.60Light-harvesting protein n=1 Tax=Nannochloropsis g... [more]
A0A6H5KVZ6_9PHAE9.800e-4951.15LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D8LBT8_ECTSI5.970e-4851.18Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
D5KBP8_ELYCH3.130e-4754.05Light harvesting complex protein 3 (Fragment) n=4 ... [more]
A0A835Z571_9STRA8.080e-4750.29Light harvesting complex protein n=1 Tax=Tribonema... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022796Chlorophyll A-B binding proteinPFAMPF00504Chloroa_b-bindcoord: 68..209
e-value: 1.1E-27
score: 97.6
NoneNo IPR availableGENE3D1.10.3460.10Chlorophyll a/b binding protein domaincoord: 53..228
e-value: 3.8E-37
score: 130.0
NoneNo IPR availablePANTHERPTHR21649:SF89CHLOROPHYLL A-B BINDING PROTEIN 6, CHLOROPLASTICcoord: 55..219
NoneNo IPR availableSUPERFAMILY103511Chlorophyll a-b binding proteincoord: 66..227
IPR001344Chlorophyll A-B binding protein, plant and chromistaPANTHERPTHR21649CHLOROPHYLL A/B BINDING PROTEINcoord: 55..219

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig670contigP-littoralis_Contig670:105683..112843 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig670.20.1mRNA_P-littoralis_Contig670.20.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig670 105683..114537 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig670.20.1 ID=prot_P-littoralis_Contig670.20.1|Name=mRNA_P-littoralis_Contig670.20.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=229bp
MTREVALLILSFIVNCGGFTIRSNSRKLTCFPALDICGRGGGSRHRSSSS
GVVQMSISEMIGADVESGGVFDPLGFSEDEPSLFRRRAVELKHGRVAMLA
VTGIVVQTFVRFPGFPPFPVSNAARPLAVLKGLMSDKTNSVLLALLVIGA
LELTIGKQDYVDRAPGELGEFGTFAKPVDEDEWFKVQMAELKHGRLAMLG
VVGCFVQEAVTGQGPVEQLLLGNISPFS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022796Chloroa_b-bind
IPR001344Chloro_AB-bd_pln