prot_P-littoralis_Contig604.14.2 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig604.14.2
Unique Nameprot_P-littoralis_Contig604.14.2
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length616
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig604.14.2 vs. uniprot
Match: D7FKM7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKM7_ECTSI)

HSP 1 Score: 150 bits (380), Expect = 6.010e-36
Identity = 123/290 (42.41%), Postives = 155/290 (53.45%), Query Frame = 0 
Query:  161 SASPPASPSPSLQELLGISDAELEVLWNKNQVSKPAFNNLVKTSSGGSDDTGHGGGGSTEAGVSFDVTLPSPSSPQSPPSSCFPRFLLDDLRVEPSEIKSLVLRRPILLSWSDTAAKKVSRWLQERLGMRRXXXXXXXXXXXXXXXKTLDN-VELKVVWLQDNLDLGKSGDRGVVKLLLTAPSILGLSIERSLEPMLRWLKDRLGLSSEGAAKVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXHDESKILAMVAAAXXXXXXXXXXXXXXXXXXXRHSVGLSPPEICELI 449
            S+ PP SPS SLQ +LGISD + E++ +  Q +K  F+NL+  S GG              G +   T  SP     PPSSCFPRFLL +L   P ++KSLVLRRP++L WS  AA KVSRWLQ+ LGM +               K+++N VE KV WL+ NL+   + D GVV                          +RLG+S E AAK+A      XXXXXXXXXXXXXXXXXXXX   DE  +LAMVAAA                   R S+GL+P ++CE+I
Sbjct:   25 SSPPPPSPSASLQAILGISDTQAEIIRSSGQTTKTGFDNLISVSDGGD-----------RPGTNVSFTKSSP-----PPSSCFPRFLLHELHAAPEDVKSLVLRRPVVLGWSAVAAGKVSRWLQDCLGMNQSEVARLLLRHPEAGTKSVENTVEPKVEWLRTNLNFDAADDGGVVXXXXXXXXXXXXXXXXXXXXXXXXXXERLGVSCEEAAKIARENPTLXXXXXXXXXXXXXXXXXXXXDIKDEGIVLAMVAAAPKILSLNTRTGIEPKLAWLRDSLGLNPQDVCEII 298
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig604.14.2 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FKM7_ECTSI6.010e-3642.41Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003690Transcription termination factor, mitochondrial/chloroplasticSMARTSM00733mt_12coord: 334..366
e-value: 0.0036
score: 26.5
coord: 557..588
e-value: 0.62
score: 19.1
coord: 409..441
e-value: 1.5
score: 17.8
coord: 520..552
e-value: 0.12
score: 21.4
coord: 259..290
e-value: 1400.0
score: 2.8
coord: 295..326
e-value: 2100.0
score: 1.4
coord: 483..515
e-value: 5.2
score: 16.0
coord: 446..478
e-value: 19.0
score: 14.1
coord: 371..403
e-value: 0.48
score: 19.5
IPR003690Transcription termination factor, mitochondrial/chloroplasticPFAMPF02536mTERFcoord: 285..606
e-value: 2.3E-29
score: 102.3
IPR003690Transcription termination factor, mitochondrial/chloroplasticPANTHERPTHR13068CGI-12 PROTEIN-RELATEDcoord: 436..584
IPR003690Transcription termination factor, mitochondrial/chloroplasticPANTHERPTHR13068CGI-12 PROTEIN-RELATEDcoord: 248..435
IPR038538MTERF superfamily, mitochondrial/chloroplasticGENE3D1.25.70.10Transcription termination factor 3, mitochondrialcoord: 243..382
e-value: 5.9E-18
score: 66.9
coord: 383..612
e-value: 1.4E-40
score: 141.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 135..174
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 198..241
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 198..212
NoneNo IPR availablePANTHERPTHR13068:SF5TRANSCRIPTION TERMINATION FACTOR MTERF6, CHLOROPLASTIC/MITOCHONDRIALcoord: 248..435
NoneNo IPR availablePANTHERPTHR13068:SF5TRANSCRIPTION TERMINATION FACTOR MTERF6, CHLOROPLASTIC/MITOCHONDRIALcoord: 436..584

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig604contigP-littoralis_Contig604:71222..75394 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig604.14.2mRNA_P-littoralis_Contig604.14.2Pylaiella littoralis U1_48mRNAP-littoralis_Contig604 70456..75697 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig604.14.2 ID=prot_P-littoralis_Contig604.14.2|Name=mRNA_P-littoralis_Contig604.14.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=616bp
MHPFRRGLRCRPSKPPSTPVLALAQAHSLRYFREVVPSQVSPQRLATETC
GPQQSRWRTNRPLPEQLERTVLPGSGNDCAEAATDAAAARVQHLHCWRSL
CLGAKEAVAAFSPPSWSRKDARRYAGNQYNMPNMPTTAAGAQPVGSITTG
GSMQTAPLSSSASPPASPSPSLQELLGISDAELEVLWNKNQVSKPAFNNL
VKTSSGGSDDTGHGGGGSTEAGVSFDVTLPSPSSPQSPPSSCFPRFLLDD
LRVEPSEIKSLVLRRPILLSWSDTAAKKVSRWLQERLGMRRSEVARLMLR
HPEVATKTLDNVELKVVWLQDNLDLGKSGDRGVVKLLLTAPSILGLSIER
SLEPMLRWLKDRLGLSSEGAAKVARANPNVFGLRVEGNLEPTLAWLQKRL
NLHDESKILAMVAAAPNILSMNMHTGLEPKFAWLRHSVGLSPPEICELIG
KEPTILYNSVRHNLDPTLTWLKEHLNLDNQAAREMILASPRLLSTSVGEN
LSLKLPWLQQTLGLDAGEAVALAQRAPAVLQYSINNNLEPTLIFFQEKMG
ASKEELRAAVLRNPKVLAYSLERRLQPRVAEMKRVKVQPVFSKHRTHVCL
WADSKFKGFIERHRH*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003690MTERF
IPR038538MTERF_sf