mRNA_P-littoralis_Contig604.14.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig604.14.2
Unique NamemRNA_P-littoralis_Contig604.14.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig604.14.2 vs. uniprot
Match: D7FKM7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKM7_ECTSI)

HSP 1 Score: 150 bits (380), Expect = 3.450e-35
Identity = 123/290 (42.41%), Postives = 155/290 (53.45%), Query Frame = 1 
Query:  784 SASPPASPSPSLQELLGISDAELEVLWNKNQVSKPAFNNLVKTSSGGSDDTGHGGGGSTEAGVSFDVTLPSPSSPQSPPSSCFPRFLLDDLRVEPSEIKSLVLRRPILLSWSDTAAKKVSRWLQERLGMRRXXXXXXXXXXXXXXXKTLDN-VELKVVWLQDNLDLGKSGDRGVVKLLLTAPSILGLSIERSLEPMLRWLKDRLGLSSEGAAKVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXHDESKILAMVAAAXXXXXXXXXXXXXXXXXXXRHSVGLSPPEICELI 1650
            S+ PP SPS SLQ +LGISD + E++ +  Q +K  F+NL+  S GG              G +   T  SP     PPSSCFPRFLL +L   P ++KSLVLRRP++L WS  AA KVSRWLQ+ LGM +               K+++N VE KV WL+ NL+   + D GVV                          +RLG+S E AAK+A      XXXXXXXXXXXXXXXXXXXX   DE  +LAMVAAA                   R S+GL+P ++CE+I
Sbjct:   25 SSPPPPSPSASLQAILGISDTQAEIIRSSGQTTKTGFDNLISVSDGGD-----------RPGTNVSFTKSSP-----PPSSCFPRFLLHELHAAPEDVKSLVLRRPVVLGWSAVAAGKVSRWLQDCLGMNQSEVARLLLRHPEAGTKSVENTVEPKVEWLRTNLNFDAADDGGVVXXXXXXXXXXXXXXXXXXXXXXXXXXERLGVSCEEAAKIARENPTLXXXXXXXXXXXXXXXXXXXXDIKDEGIVLAMVAAAPKILSLNTRTGIEPKLAWLRDSLGLNPQDVCEII 298
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig604.14.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FKM7_ECTSI3.450e-3542.41Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig604contigP-littoralis_Contig604:70456..75697 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FKM7
PFAMsmTERF
Model size2917
Max annot lvl2759|Eukaryota
KEGG koko:K15031,ko:K15032
Hectar predicted targeting categoryother localisation
Exons2
Evalue9.86e-37
EggNOG OGsKOG1267@1|root,KOG1267@2759|Eukaryota
Ec32 ortholog descriptionMitochodrial transcription termination factor
Ec32 orthologEc-09_000780.1
Descriptiontermination of mitochondrial transcription
Cds size1848
COG categoryS
BRITEko00000,ko03012,ko03029
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791259.8230925-UTR-P-littoralis_Contig604:70455..712211680791259.8230925-UTR-P-littoralis_Contig604:70455..71221Pylaiella littoralis U1_48UTRP-littoralis_Contig604 70456..71221 -
1680791259.8630574-UTR-P-littoralis_Contig604:75394..756971680791259.8630574-UTR-P-littoralis_Contig604:75394..75697Pylaiella littoralis U1_48UTRP-littoralis_Contig604 75395..75697 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791259.8401098-CDS-P-littoralis_Contig604:71221..727011680791259.8401098-CDS-P-littoralis_Contig604:71221..72701Pylaiella littoralis U1_48CDSP-littoralis_Contig604 71222..72701 -
1680791259.8520875-CDS-P-littoralis_Contig604:75026..753941680791259.8520875-CDS-P-littoralis_Contig604:75026..75394Pylaiella littoralis U1_48CDSP-littoralis_Contig604 75027..75394 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig604.14.2prot_P-littoralis_Contig604.14.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig604 71222..75394 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig604.14.2

>prot_P-littoralis_Contig604.14.2 ID=prot_P-littoralis_Contig604.14.2|Name=mRNA_P-littoralis_Contig604.14.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=616bp
MHPFRRGLRCRPSKPPSTPVLALAQAHSLRYFREVVPSQVSPQRLATETC
GPQQSRWRTNRPLPEQLERTVLPGSGNDCAEAATDAAAARVQHLHCWRSL
CLGAKEAVAAFSPPSWSRKDARRYAGNQYNMPNMPTTAAGAQPVGSITTG
GSMQTAPLSSSASPPASPSPSLQELLGISDAELEVLWNKNQVSKPAFNNL
VKTSSGGSDDTGHGGGGSTEAGVSFDVTLPSPSSPQSPPSSCFPRFLLDD
LRVEPSEIKSLVLRRPILLSWSDTAAKKVSRWLQERLGMRRSEVARLMLR
HPEVATKTLDNVELKVVWLQDNLDLGKSGDRGVVKLLLTAPSILGLSIER
SLEPMLRWLKDRLGLSSEGAAKVARANPNVFGLRVEGNLEPTLAWLQKRL
NLHDESKILAMVAAAPNILSMNMHTGLEPKFAWLRHSVGLSPPEICELIG
KEPTILYNSVRHNLDPTLTWLKEHLNLDNQAAREMILASPRLLSTSVGEN
LSLKLPWLQQTLGLDAGEAVALAQRAPAVLQYSINNNLEPTLIFFQEKMG
ASKEELRAAVLRNPKVLAYSLERRLQPRVAEMKRVKVQPVFSKHRTHVCL
WADSKFKGFIERHRH*
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mRNA from alignment at P-littoralis_Contig604:70456..75697-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig604.14.2 ID=mRNA_P-littoralis_Contig604.14.2|Name=mRNA_P-littoralis_Contig604.14.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=5242bp|location=Sequence derived from alignment at P-littoralis_Contig604:70456..75697- (Pylaiella littoralis U1_48)
CCGGGAGTGGTCTTCCTTTAAAGCTGCAATCACAACTCGATGGGGTTTTC
ATGCAATTCTCTCAAAGTGGTGATGCATGTCTGAGAACAGAACATACAGC
ACGGTACAGCCCACGCCGGAAACTTGGTCTCCGTCGCGGGACTGTTGGAA
GTTGGAAACGCGTTGGCAGTTGGCATGCATTCAGCGACAGCACTGGGCTA
CCGCTGTAAACCTGTACCTTCCACAACAGCCTAGCACCAGGCTGATCCCT
CACAATCCCTCTATCTCTCTCTCTCCTGGTGCGTGTCTGTGGCGGAGAGC
CGAATGCATCCATTCAGGAGGGGCTTACGGTGCCGGCCCAGCAAGCCACC
ATCCACTCCCGTGCTGGCCCTTGCTCAAGCGCACTCTCTTCGATACTTTC
GTGAAGTAGTACCGTCACAGGTATCACCGCAGCGTCTCGCCACGGAGACG
TGCGGTCCTCAGCAGAGTCGTTGGCGCACAAATCGTCCACTGCCGGAGCA
GCTCGAGAGAACCGTGCTTCCGGGGTCGGGGAATGATTGTGCCGAGGCTG
CTACGGATGCCGCAGCAGCTCGCGTGCAACATTTGCATTGCTGGCGGAGT
CTGTGCCTGGGGGCGAAGGAAGCTGTTGCGGCGTTTTCACCACCATCGTG
GTCGAGGAAAGATGCTCGTCGGTGAGGATTTGCCGTGTCTCGCTCACTTG
GTGACAACATCGTCATGTGCATGAACACAGCACGAGTTGAGCTTGGGTAG
GTCGCATGCGTTGCGACAGAAAAATGTGCAATGGACTTTTAACTTTGGTC
TCGCTGGTACTGCCGCTGTGGCTTCACCCGACCAATGCTCTGCTTTATCT
ATTTTGCGAGTTTATAGGTCGAGAGCTTTGGCCAACTCGCCGTTTCCTCA
TATGTATGATACGTATACTTGTAGTCATGGTCAGCCGCAGCGGCGGTTAC
AATCGGTTATTCGGTCTCACCACCCTGTTGTGCTTCGTATGAGTACAGAC
ATTTGAGAGTCTCGTTTGCATATTTTCCCTCGACAATGAATCACGTTGTA
TGATACAGTAGACAGAAGAATGGTACCGAATTACGTAGTACGTTTTTTTT
ACCTCTCAACACCAACCTGGCGTTTGTCAGATCAGGTCTCGCACTGAACT
CAAGTACAGTAATACAGCCGAAATCTCCGTACATAGTACGCTTCTACATA
CGGCTGCTGCATGCCTTTTAAACATGTGCACGAGAGTACAAGATTGCCCT
CCGGGTAGGCTTTTCTGAGACACTACGTGCAGAGTCAAGGGGTGCAAGAC
GGAGATAAAAGATAGGCAGTGGATCAGCTGCCGTTTCCCAGTGTTTGAGG
GAGACACAGCGGTGCAGTATTGCTGTACAGGCACTGCAACGAACATGGGG
CGGAAAGTGACATACATGACGATTTATAGGGGCGGGTCGGGCGGAGGAGG
CGAAGTAATTCCCGTGATTCTGACTTCTATATCGTGGAACATACGCGATA
CAATCTGTTGGCGAACTTGCCTGTGGGCGTGATTGTCCGGGTGGACAAAA
ACTCTTCTGGCGTTGGTTCCCTTCCCTGTTGGATGGACAAACGCCGAAGA
GGTAGCTTCATGTATGTGAGGCCGGCGGCCGCTGCTGTAAGGCGAAGCCT
CGAAAGTCCATACTGCATCAACGTGCACTACAGCAGTTTGGATCAGAGCA
TAATTGAAAATAAAATAAATCGGACTACAACAGTAGTTGTCCTTTTCCTT
TCTTGCCTCGTACGGCATCTCGCCTGTCATATGTACAGACAAACATCCAA
ATAAATCTTTGGGCAGCACTATTGCAGCAGACCTGCTTCTACTCACGCCG
CACGCAGCACTATCCTAAAGTCGGCCAGAGTGCTGCTTCAGTATTGGTGT
AGAAAGGCCAGGAACCGTCCCCGGATAATTCATGTACAGCAGCAAAATTA
TTTTTTTTGTGCGCTCTGTCGAATGTTGTGATGATACTCGTATGCCTATT
GTGGTGACGCTGCTGCTGCTGCTGTTATGGTGGTAGTGATGGTGCTTGGT
ACAGCACGAACATACCGGTCTCATATCACACCCCCCCCCATCATTTTTGG
TCGAGGGTGTGAGCTTCGAAAAAAAAACAGAATGTGTCTTCTTTTGTTCT
TTTGAATATAGACAAAAACAAGATTCGCCGACTTGAAAATAATTTCTTGA
ACAGGGTGTTCCGTACACAGCGCTGCTAGTCCCTGCTGATTGAATGACCT
CACCCTGAGACCAACGCTCTGCTGGGCGGTAAGCGGCGAGTGGAGATCCC
ATGCTCCCAAGTTTCAGCTTGAAACGTGCTCGATGGATTCACAAACCGAA
TGTGGTGTGCTCGTGCGAGATTACAAAGCTGACTTTTTTGCTCTGTGGGT
AAAAACGCGCTGTTGATATCCCCGGCTTCAAGCCTGTGGTCAATTTTTTT
TTGCGTACCTGAAGAACGACCACTTCCGGCCAGCGGTCTGGTTGGCAAGG
CAAGGCGCGTTAGGTTGCTCCGAGCCCTCGATGAGCGCGCCACGTTTGGT
ATTTCTTGCGTCGTCGGTACTACATTTGTATCTCCATAACATTTGTGGTG
TGTGCATGCGTGCGGAGCGGCACAATGGATCCCCCTCCCTCGGAACAAGA
ACCCGAGAAGGTGTGAATCGCCCGAATCTGGGGCCCAACTTTCCAAAAAC
CCGGCCTCTCGATCTTAACCCGAAAGTTGGGAAGATTCCAAGGCAACGTT
TTTCCCCCATGAGCGATGCATATGGAGGGTTCTTTCTTAAAGCATCCACT
CCCCTCCCCCCCAAAAAGTCAATGCCGTATTAAGAAAATTGTCTTCGTAG
CGTCCGGTCGAAGACTTACTTCGTACACGTACTTCACAGGCATTTCCCAA
CTGTTTCAATTTTGAGAATTATTTGGCACTACATTTCACTGCTGTTGGTC
AATACACCGTCTATTTTGGCTCTGCTGCGTTTTTTGTTTTTACCAGCTAC
GCTGGCAATCAGTACAACATGCCCAACATGCCGACAACTGCTGCAGGGGC
GCAACCGGTGGGCAGCATCACCACCGGTGGAAGTATGCAGACGGCGCCGT
TGTCATCATCAGCGTCACCACCAGCGTCACCATCACCATCACTGCAGGAA
CTGCTCGGAATTTCGGACGCAGAACTCGAGGTTTTATGGAACAAGAACCA
AGTGTCCAAACCAGCCTTTAACAACCTGGTCAAAACCAGCAGCGGTGGCA
GCGATGACACCGGCCATGGTGGGGGAGGCAGCACGGAGGCTGGCGTTTCT
TTCGACGTCACGTTGCCATCACCATCATCACCCCAATCTCCACCTTCTTC
CTGCTTCCCCAGATTCCTGCTCGATGATCTCCGCGTTGAACCCAGTGAGA
TAAAGTCCCTCGTGCTTCGAAGGCCGATCCTGCTGAGTTGGTCAGACACG
GCTGCCAAAAAGGTGTCGAGGTGGCTCCAAGAAAGATTAGGGATGCGGCG
ATCTGAAGTTGCGCGGTTGATGCTGAGGCACCCAGAGGTCGCGACGAAAA
CCTTAGATAATGTCGAGCTTAAGGTGGTGTGGTTGCAAGATAATCTGGAC
CTTGGCAAAAGTGGCGATCGCGGCGTGGTGAAGCTGCTTTTAACAGCGCC
GAGCATTTTGGGCCTAAGCATCGAACGGTCGCTGGAGCCGATGCTGCGGT
GGCTGAAGGATCGACTGGGCTTGTCCAGCGAGGGGGCGGCGAAGGTTGCG
CGCGCAAATCCCAACGTGTTCGGGCTCAGAGTGGAGGGCAACCTCGAACC
GACGCTGGCGTGGCTTCAAAAACGCCTGAATCTCCACGACGAGAGCAAAA
TCCTTGCGATGGTAGCAGCGGCTCCCAACATCCTCTCCATGAATATGCAC
ACGGGGTTGGAGCCCAAGTTTGCCTGGCTACGACATAGCGTTGGCCTGAG
CCCGCCAGAAATTTGCGAGCTTATCGGCAAGGAACCAACAATTCTTTACA
ACAGCGTCCGTCACAACTTAGATCCGACGCTGACGTGGTTGAAAGAGCAC
CTGAACCTGGATAACCAGGCGGCTCGGGAGATGATATTAGCCAGCCCGCG
ACTGCTGTCTACTAGCGTTGGCGAAAACCTGTCGCTCAAGCTCCCGTGGC
TTCAACAAACGCTAGGTTTAGACGCAGGTGAGGCGGTAGCATTGGCGCAG
AGAGCCCCGGCCGTCCTCCAATACAGCATAAATAATAACCTAGAACCGAC
GCTTATTTTTTTTCAAGAGAAGATGGGCGCCTCCAAGGAGGAGCTGCGGG
CGGCCGTGTTGCGAAACCCTAAAGTGCTAGCGTACAGCTTGGAGCGGCGG
CTTCAACCGCGCGTGGCGGAAATGAAGCGGGTGAAGGTGCAACCCGTGTT
TTCCAAGCATCGGACCCATGTTTGTTTGTGGGCAGATTCGAAGTTCAAAG
GGTTCATTGAGCGCCATAGACATTGACAGCAGTATTCGACAACAAACATG
GCAGCATTTTAGAATATCTGCGTTTGTTGTAAAGCGTGCTGCTGTGCGTA
TGATACCACGATTCAGCTCACTAATATGGATGAGTTGTCGTCGAGTACGA
GCTATATACCTGGTGCTTTGTCAAACGGAGGGGGGAGTGGCAAAATTGAA
TAACTACGGTGCTCATGGTGCCTCACTTGTCGTAAAAACCTCACCACCTT
TTGCGTGCCTGTGCACAAAACGGCGCGCGGGTCCTGACTGCGGCTCAAGC
TCGTGCGCGAGTAGCGCAATGCATTTGTACGCCCGCAGCGTGGGAGTGTT
AACATACCCTGAGGGTTCGTCGCCAGGCACCACTTGCCAGGATTGATAAT
CCGACCAACAGAGCGTCCATGGACAAACTGGGGTTCCACACGAAGAGACC
ACACTTCCTTGTTTCTTTGGAGAACGTTGAGGGAAAGGGGAAACCTGGAG
GTGTTGGGTAGTGTTGACGGAATCTCGTTCGAAACTTAAGAGTGTTTCTA
TCACCCCGTTTGTCGGTGTGCACCTAACCCGTGCCGTTTTTTGGTTTCGT
CCAGTTTATTTTCTTGGTTTGGAGGAGAGCCTCTATCGCACTTCGCAGTA
CATGTTAGTGTGCTGTGTGCCCGCCCGGCTGGTCGTTGTGTTTTGTCTGC
CACCGTCCTACTTTGTACTCACACTGCTGCTCTCTGGGATTAAAGTCCAA
GATTGTGTCTGCAAATCTTGGTCCACGTAGGAGCATTACCCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig604:70456..75697-

>mRNA_P-littoralis_Contig604.14.2 ID=mRNA_P-littoralis_Contig604.14.2|Name=mRNA_P-littoralis_Contig604.14.2|organism=Pylaiella littoralis U1_48|type=CDS|length=1848bp|location=Sequence derived from alignment at P-littoralis_Contig604:70456..75697- (Pylaiella littoralis U1_48)
ATGCATCCATTCAGGAGGGGCTTACGGTGCCGGCCCAGCAAGCCACCATC
CACTCCCGTGCTGGCCCTTGCTCAAGCGCACTCTCTTCGATACTTTCGTG
AAGTAGTACCGTCACAGGTATCACCGCAGCGTCTCGCCACGGAGACGTGC
GGTCCTCAGCAGAGTCGTTGGCGCACAAATCGTCCACTGCCGGAGCAGCT
CGAGAGAACCGTGCTTCCGGGGTCGGGGAATGATTGTGCCGAGGCTGCTA
CGGATGCCGCAGCAGCTCGCGTGCAACATTTGCATTGCTGGCGGAGTCTG
TGCCTGGGGGCGAAGGAAGCTGTTGCGGCGTTTTCACCACCATCGTGGTC
GAGGAAAGATGCTCGTCGCTACGCTGGCAATCAGTACAACATGCCCAACA
TGCCGACAACTGCTGCAGGGGCGCAACCGGTGGGCAGCATCACCACCGGT
GGAAGTATGCAGACGGCGCCGTTGTCATCATCAGCGTCACCACCAGCGTC
ACCATCACCATCACTGCAGGAACTGCTCGGAATTTCGGACGCAGAACTCG
AGGTTTTATGGAACAAGAACCAAGTGTCCAAACCAGCCTTTAACAACCTG
GTCAAAACCAGCAGCGGTGGCAGCGATGACACCGGCCATGGTGGGGGAGG
CAGCACGGAGGCTGGCGTTTCTTTCGACGTCACGTTGCCATCACCATCAT
CACCCCAATCTCCACCTTCTTCCTGCTTCCCCAGATTCCTGCTCGATGAT
CTCCGCGTTGAACCCAGTGAGATAAAGTCCCTCGTGCTTCGAAGGCCGAT
CCTGCTGAGTTGGTCAGACACGGCTGCCAAAAAGGTGTCGAGGTGGCTCC
AAGAAAGATTAGGGATGCGGCGATCTGAAGTTGCGCGGTTGATGCTGAGG
CACCCAGAGGTCGCGACGAAAACCTTAGATAATGTCGAGCTTAAGGTGGT
GTGGTTGCAAGATAATCTGGACCTTGGCAAAAGTGGCGATCGCGGCGTGG
TGAAGCTGCTTTTAACAGCGCCGAGCATTTTGGGCCTAAGCATCGAACGG
TCGCTGGAGCCGATGCTGCGGTGGCTGAAGGATCGACTGGGCTTGTCCAG
CGAGGGGGCGGCGAAGGTTGCGCGCGCAAATCCCAACGTGTTCGGGCTCA
GAGTGGAGGGCAACCTCGAACCGACGCTGGCGTGGCTTCAAAAACGCCTG
AATCTCCACGACGAGAGCAAAATCCTTGCGATGGTAGCAGCGGCTCCCAA
CATCCTCTCCATGAATATGCACACGGGGTTGGAGCCCAAGTTTGCCTGGC
TACGACATAGCGTTGGCCTGAGCCCGCCAGAAATTTGCGAGCTTATCGGC
AAGGAACCAACAATTCTTTACAACAGCGTCCGTCACAACTTAGATCCGAC
GCTGACGTGGTTGAAAGAGCACCTGAACCTGGATAACCAGGCGGCTCGGG
AGATGATATTAGCCAGCCCGCGACTGCTGTCTACTAGCGTTGGCGAAAAC
CTGTCGCTCAAGCTCCCGTGGCTTCAACAAACGCTAGGTTTAGACGCAGG
TGAGGCGGTAGCATTGGCGCAGAGAGCCCCGGCCGTCCTCCAATACAGCA
TAAATAATAACCTAGAACCGACGCTTATTTTTTTTCAAGAGAAGATGGGC
GCCTCCAAGGAGGAGCTGCGGGCGGCCGTGTTGCGAAACCCTAAAGTGCT
AGCGTACAGCTTGGAGCGGCGGCTTCAACCGCGCGTGGCGGAAATGAAGC
GGGTGAAGGTGCAACCCGTGTTTTCCAAGCATCGGACCCATGTTTGTTTG
TGGGCAGATTCGAAGTTCAAAGGGTTCATTGAGCGCCATAGACATTGA
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