prot_P-littoralis_Contig204.84.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig204.84.1
Unique Nameprot_P-littoralis_Contig204.84.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length379
Homology
BLAST of mRNA_P-littoralis_Contig204.84.1 vs. uniprot
Match: D8LK53_ECTSI (HTH La-type RNA-binding domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LK53_ECTSI)

HSP 1 Score: 300 bits (769), Expect = 3.410e-96
Identity = 208/345 (60.29%), Postives = 234/345 (67.83%), Query Frame = 0
Query:    1 MSSSSAGNSKPPASTPVKWTLVEAVAETPEGRRSKQTQ--GQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGSNVGGATFYAAQDDFGAENPNNEKQKAHMTDMAVRQIEFYFTVENLCRDIFMRSYMDEEGYIPIAFVANFPGVARFGVELEDIAAGILASDTLQVDTENETMRMREGWEVWLLPNQATGKQGMPRYIKVDPATNSEVIGTAEVEAGGTPQETKQSSVDNAGEVLDADDTKLVVSPGKESSDQEASKNEGEEVKEPAVEEKRRITSGQGQTQKGSVKPGFEFTPNAPAWTPGGVSKEVVEENT 343
            MSS S+GN+KP ASTPVKWTLVEAVAETPEGRR K     GQR                    XXXXXXXXXXXXX                  XXXXXXX G  VGGAT+Y  Q + GAE  + E+QKA+MT++AVRQIEFYFTVENLCRDIFMRSYMDEEGYIPIAFVANFPGVARFGVELEDI AGILASDTLQVDTENETMRMREGWEVWLLPNQATGKQG+PRYIKVDPA  SE       E  G P +T Q +  +AG+V  A+DT+  +   KE S   A K EG+ V  P  EE+++ +S +GQ          E TP APAWTP G S + V+E +
Sbjct:    1 MSSGSSGNAKPSASTPVKWTLVEAVAETPEGRRHKHQSHAGQRKGPGARGSGYTGNWGQGRDGXXXXXXXXXXXXXNRGQRRGGGAGSRNNQGQXXXXXXXXGY-VGGATYYPTQANVGAE--SFEEQKAYMTNLAVRQIEFYFTVENLCRDIFMRSYMDEEGYIPIAFVANFPGVARFGVELEDITAGILASDTLQVDTENETMRMREGWEVWLLPNQATGKQGVPRYIKVDPAV-SEADRVNGTEPSGIPAQTTQDAA-SAGDVPGAEDTQTSL---KEDSTAGAEKKEGDSVTGPVAEEEQQRSSEKGQVSHEDAAK-TELTPLAPAWTPVGASTDAVQEQS 336          
BLAST of mRNA_P-littoralis_Contig204.84.1 vs. uniprot
Match: A0A836CAE4_9STRA (HTH La-type RNA-binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAE4_9STRA)

HSP 1 Score: 138 bits (347), Expect = 9.600e-35
Identity = 66/142 (46.48%), Postives = 92/142 (64.79%), Query Frame = 0
Query:  127 KAHMTDMAVRQIEFYFTVENLCRDIFMRSYMDEEGYIPIAFVANFPGVARFGVELEDIAAGILASDTLQVDTENETMRMREGWEVWLLPNQATGKQGMPRYIKVDPATNSEVIGTAEVEAGGTPQETKQSSVDNAGEVLDAD 268
            K    + AV+Q+E+YF+V NLC D+FMRSYMD EGYIP+AFVANFPG A  G E  DI   + +S+ L+ D  NETMR+REGW++W+LPN A+G  G+PRYIK+     +++    E +A    +E    +  N    ++ D
Sbjct:    7 KKMAAEYAVKQMEWYFSVHNLCSDVFMRSYMDTEGYIPVAFVANFPGCASLGAEFTDILEALKSSEMLEFDEANETMRLREGWDMWILPN-ASGGLGVPRYIKLSEDEAAKIAAQQEAQAAAKSEEPSAEATMNGAAAVEED 147          
BLAST of mRNA_P-littoralis_Contig204.84.1 vs. uniprot
Match: A0A7R9U3W9_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U3W9_9STRA)

HSP 1 Score: 117 bits (294), Expect = 5.150e-26
Identity = 63/143 (44.06%), Postives = 88/143 (61.54%), Query Frame = 0
Query:  109 FYAAQDDFGAENPNNEKQKAHMTDMAVRQIEFYFTVENLCRDIFMRSYMDEEGYIPIAFVANFPGVARFGVELEDIAAGILASDTLQVDTENETMRMREGWEVWLLPNQATGKQGMPRYIKVDPA--TNSEVIG-TAEVEAGG 248
            FYAA    G   P + + +  +   AVR IE  F+  +LC D F+R +MD  GY+P+A VAN+  VA++G   ED+ AG+  S+ LQ+D ENET+R+RE WE WL P+   G  G PRY+KV P   T+ +  G TA+ +A G
Sbjct:  208 FYAAYGPAGVFVPASNENRTMLAASAVRAIEMTFSPNHLCTDEFLRQHMDVAGYVPVALVANYSHVAQYGALYEDLLAGLANSELLQLDAENETVRLRENWEQWLFPD-GKGGMGCPRYVKVSPVPPTDQDASGSTADGDAKG 349          
BLAST of mRNA_P-littoralis_Contig204.84.1 vs. uniprot
Match: A0A7S1UC17_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UC17_9STRA)

HSP 1 Score: 113 bits (282), Expect = 1.350e-25
Identity = 59/123 (47.97%), Postives = 79/123 (64.23%), Query Frame = 0
Query:  109 FYAA-QDDFGAENPNNEKQKAHMTDMAVRQIEFYFTVENLCRDIFMRSYMDEEGYIPIAFVANFPGVARFGVELEDIAAGILASDTLQVDTENETMRMREGWEVWLLPNQATGKQGMPRYIKV 230
            FYAA     GA  P   + +      AVR IE  F+  +LC D ++R  MD EGYIP+AFVAN+P VA++G   ED+ +GI +S+ L++D ENETMR+RE W+ WL P+   G  G PRY+KV
Sbjct:   59 FYAAGYGGPGALVPARHENRHLFAASAVRAIEMTFSPNHLCTDEWLRQNMDVEGYIPVAFVANYPHVAQYGALYEDLLSGIASSEILELDAENETMRLRENWQQWLFPD-GKGGMGCPRYVKV 180          
BLAST of mRNA_P-littoralis_Contig204.84.1 vs. uniprot
Match: K8ZBX0_NANGC (Rna-binding la domain protein (Fragment) n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=K8ZBX0_NANGC)

HSP 1 Score: 108 bits (270), Expect = 1.530e-23
Identity = 58/147 (39.46%), Postives = 87/147 (59.18%), Query Frame = 0
Query:  122 NNEKQKAHMTDMAVRQIEFYFTVENLCRDIFMRSYMDEEGYIPIAFVANFPGVARFGVELEDIAAGIL-ASDTLQVDTENETMRMREGWEVWLLPNQATGKQGMPRYIKVDPATNSEVIGTAEV-----EAGGTPQETKQSSVDNAG 262
            N  + + ++  MAV+QIE+YF+V+NLCRD ++R+++DEEG++P+A + NFP VA F  +  +I   +  AS  L+ D  NET+R++E    WLLPN   G  G PR++K  P T  +      V     EAGG   E  +   D+ G
Sbjct:   51 NALEAREYLASMAVQQIEYYFSVDNLCRDTYLRAHLDEEGWVPLALICNFPTVASFAADYSEIVKTLQEASSVLEYDEANETLRLKEKATAWLLPN-GRGGMGCPRWLKQAPDTPPQESKLPPVVLPNPEAGGEKGEVAEKKADSEG 196          
BLAST of mRNA_P-littoralis_Contig204.84.1 vs. uniprot
Match: A0A2P4X4J6_9STRA (La domain family n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X4J6_9STRA)

HSP 1 Score: 104 bits (260), Expect = 1.320e-22
Identity = 48/97 (49.48%), Postives = 68/97 (70.10%), Query Frame = 0
Query:  134 AVRQIEFYFTVENLCRDIFMRSYMDEEGYIPIAFVANFPGVARFGVELEDIAAGILASDTLQVDTENETMRMREGWEVWLLPNQATGKQGMPRYIKV 230
            A  QIEFYFT +NL RDIF+R +MD +GY+P+AFV +F  V     + E +   +  S+T+++D +NE +R+REGW+ W+ PN A G  G+PRYIKV
Sbjct:  121 AKNQIEFYFTSDNLVRDIFLRQHMDVDGYVPLAFVGSFQAVYSVHQDYESLLEAMKNSETIELDEQNEKIRLREGWQKWVWPN-AEGGYGVPRYIKV 216          
BLAST of mRNA_P-littoralis_Contig204.84.1 vs. uniprot
Match: A0A225VMU3_9STRA (HTH La-type RNA-binding domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VMU3_9STRA)

HSP 1 Score: 103 bits (257), Expect = 3.350e-22
Identity = 48/104 (46.15%), Postives = 71/104 (68.27%), Query Frame = 0
Query:  134 AVRQIEFYFTVENLCRDIFMRSYMDEEGYIPIAFVANFPGVARFGVELEDIAAGILASDTLQVDTENETMRMREGWEVWLLPNQATGKQGMPRYIKVDPATNSE 237
            A  QIEFYFT +NL RDIF+R +MD +G++P+AFV +F  V     + E +   +  SD++++D +NE +R+REGW+ W+ PN A G  G+PRYIK++  T  E
Sbjct:  121 AKNQIEFYFTSDNLVRDIFLRQHMDVDGFVPLAFVGSFQAVYSVHQDYESLLEAMKHSDSVELDEQNEKIRLREGWQKWVWPN-AEGGYGVPRYIKLENETADE 223          
BLAST of mRNA_P-littoralis_Contig204.84.1 vs. uniprot
Match: A0A484DZL2_BRELC (HTH La-type RNA-binding domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DZL2_BRELC)

HSP 1 Score: 103 bits (257), Expect = 4.020e-22
Identity = 50/102 (49.02%), Postives = 66/102 (64.71%), Query Frame = 0
Query:  134 AVRQIEFYFTVENLCRDIFMRSYMDEEGYIPIAFVANFPGVARFGVELEDIAAGILASDTLQVDTENETMRMREGWEVWLLPNQATGKQGMPRYIKVDPATN 235
            A  QIEFYFT +NL RDIF+R +MD EGY+P+AFV +F  V     + E +   +  S+TL++D  NE +R+R GWE W+ PN   G  G+PRYIKV    N
Sbjct:  126 AKNQIEFYFTSDNLVRDIFLRQHMDVEGYVPLAFVGSFQAVYAVHQDYESLIEAMKHSETLELDEANEKVRLRNGWEKWVWPN-IEGGYGVPRYIKVTEGEN 226          
BLAST of mRNA_P-littoralis_Contig204.84.1 vs. uniprot
Match: V9E4H7_PHYPR (HTH La-type RNA-binding domain-containing protein n=10 Tax=Phytophthora TaxID=4783 RepID=V9E4H7_PHYPR)

HSP 1 Score: 103 bits (257), Expect = 4.200e-22
Identity = 47/97 (48.45%), Postives = 68/97 (70.10%), Query Frame = 0
Query:  134 AVRQIEFYFTVENLCRDIFMRSYMDEEGYIPIAFVANFPGVARFGVELEDIAAGILASDTLQVDTENETMRMREGWEVWLLPNQATGKQGMPRYIKV 230
            A  QIEFYFT +NL RDIF+R +MD +GY+P+AFV +F  V     + E +   +  S+T+++D +NE +R+R+GWE W+ PN A G  G+PRYIK+
Sbjct:  128 AKNQIEFYFTSDNLVRDIFLRQHMDVDGYVPLAFVGSFQAVYSVHQDYESLLEAMKNSETVELDEQNEKIRLRDGWEKWVWPN-AVGGYGVPRYIKL 223          
BLAST of mRNA_P-littoralis_Contig204.84.1 vs. uniprot
Match: H3GP14_PHYRM (HTH La-type RNA-binding domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GP14_PHYRM)

HSP 1 Score: 102 bits (255), Expect = 6.580e-22
Identity = 46/97 (47.42%), Postives = 68/97 (70.10%), Query Frame = 0
Query:  134 AVRQIEFYFTVENLCRDIFMRSYMDEEGYIPIAFVANFPGVARFGVELEDIAAGILASDTLQVDTENETMRMREGWEVWLLPNQATGKQGMPRYIKV 230
            A  QIEFYFT +NL RDIF+R +MD +G++P+AFV +F  V     + E +   +  SDT+++D +NE +R+R+GW+ W+ PN A G  G+PRYIK+
Sbjct:  122 AKNQIEFYFTNDNLVRDIFLRQHMDVDGFVPLAFVGSFQAVYSVHQDYESLLEAMKNSDTMELDEQNEKIRLRQGWQTWVWPN-ADGGYGVPRYIKL 217          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig204.84.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LK53_ECTSI3.410e-9660.29HTH La-type RNA-binding domain-containing protein ... [more]
A0A836CAE4_9STRA9.600e-3546.48HTH La-type RNA-binding domain-containing protein ... [more]
A0A7R9U3W9_9STRA5.150e-2644.06Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S1UC17_9STRA1.350e-2547.97Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
K8ZBX0_NANGC1.530e-2339.46Rna-binding la domain protein (Fragment) n=2 Tax=N... [more]
A0A2P4X4J6_9STRA1.320e-2249.48La domain family n=1 Tax=Phytophthora palmivora va... [more]
A0A225VMU3_9STRA3.350e-2246.15HTH La-type RNA-binding domain-containing protein ... [more]
A0A484DZL2_BRELC4.020e-2249.02HTH La-type RNA-binding domain-containing protein ... [more]
V9E4H7_PHYPR4.200e-2248.45HTH La-type RNA-binding domain-containing protein ... [more]
H3GP14_PHYRM6.580e-2247.42HTH La-type RNA-binding domain-containing protein ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006630La-type HTH domainSMARTSM00715lacoord: 128..206
e-value: 7.9E-15
score: 65.3
IPR006630La-type HTH domainPFAMPF05383Lacoord: 135..186
e-value: 7.1E-15
score: 54.7
IPR006630La-type HTH domainPROSITEPS50961HTH_LAcoord: 124..215
score: 18.622856
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 118..211
e-value: 4.9E-20
score: 73.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 282..302
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 40..56
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..15
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 304..318
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 238..378
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..100
NoneNo IPR availablePANTHERPTHR22792:SF76LA-RELATED PROTEIN 1coord: 30..327
NoneNo IPR availableCDDcd07323LAMcoord: 136..204
e-value: 2.9826E-21
score: 84.8909
IPR045180La domain containing proteinPANTHERPTHR22792LUPUS LA PROTEIN-RELATEDcoord: 30..327
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 129..215

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig204contigP-littoralis_Contig204:315831..320622 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig204.84.1mRNA_P-littoralis_Contig204.84.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig204 315745..321596 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig204.84.1 ID=prot_P-littoralis_Contig204.84.1|Name=mRNA_P-littoralis_Contig204.84.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=379bp
MSSSSAGNSKPPASTPVKWTLVEAVAETPEGRRSKQTQGQRRGRGASSSG
STGSWRQPRGEGGGGGGGGGGGGGGGGRGGGGGGGRGSRNNQGRGRGYGG
GSNVGGATFYAAQDDFGAENPNNEKQKAHMTDMAVRQIEFYFTVENLCRD
IFMRSYMDEEGYIPIAFVANFPGVARFGVELEDIAAGILASDTLQVDTEN
ETMRMREGWEVWLLPNQATGKQGMPRYIKVDPATNSEVIGTAEVEAGGTP
QETKQSSVDNAGEVLDADDTKLVVSPGKESSDQEASKNEGEEVKEPAVEE
KRRITSGQGQTQKGSVKPGFEFTPNAPAWTPGGVSKEVVEENTSPIAEPP
DDKAEGTLANSSSKTIPQEGGGRAEAAV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006630La_HTH
IPR036388WH-like_DNA-bd_sf
IPR045180La_dom_prot
IPR036390WH_DNA-bd_sf