prot_P-littoralis_Contig200.76.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-littoralis_Contig200.76.1
Unique Name	prot_P-littoralis_Contig200.76.1
Type	polypeptide
Organism	Pylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length	121

Homology

[Close]

BLAST of mRNA_P-littoralis_Contig200.76.1 vs. uniprot
Match: A0A6H5KSN1_9PHAE (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KSN1_9PHAE)

HSP 1 Score: 206 bits (523), Expect = 1.150e-65
Identity = 99/107 (92.52%), Postives = 104/107 (97.20%), Query Frame = 0

Query:   15 RYEGRGGVFDSVDVGPTGGPQRSVEGWILFVRNVHEEAQEDDIMDKFSEFGAVKNLHVNLDRRTGFVKGYCLVEFEKKEEAQLAIDEMDGSQLLEQDISVTWAFVRG 121
            RYEGRGGVF+SVDVG  GGPQRSVEGWILFVRNVHEEAQEDDIMDKFSE+GAVKNLHVNLDRRTGFVKGYCLVEFEKKEEAQ AIDEMDGSQLL+QDISV+WAFV+G
Sbjct:   75 RYEGRGGVFESVDVGSAGGPQRSVEGWILFVRNVHEEAQEDDIMDKFSEYGAVKNLHVNLDRRTGFVKGYCLVEFEKKEEAQAAIDEMDGSQLLDQDISVSWAFVKG 181

[Close]

BLAST of mRNA_P-littoralis_Contig200.76.1 vs. uniprot
Match: A0A7S2G621_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G621_9STRA)

HSP 1 Score: 165 bits (418), Expect = 6.040e-50
Identity = 79/109 (72.48%), Postives = 93/109 (85.32%), Query Frame = 0

Query:   11 NETNRYEGRGGVFDSVDVGPTGGPQRSVEGWILFVRNVHEEAQEDDIMDKFSEFGAVKNLHVNLDRRTGFVKGYCLVEFEKKEEAQLAIDEMDGSQLLEQDISVTWAFV 119
            N+  RY+GRGGVF+SVD G  GGP +SVEGWILFVRNVHEEAQEDDI+DKFSE G V+N+HVNLDRRTGFVKGY LVEFE +EEA+ AI+ ++G +LL Q ISV WAF+
Sbjct:   51 NDEERYDGRGGVFESVDAGGEGGPLQSVEGWILFVRNVHEEAQEDDILDKFSESGDVRNIHVNLDRRTGFVKGYALVEFESREEAENAIETLNGEELLGQTISVDWAFL 159

[Close]

BLAST of mRNA_P-littoralis_Contig200.76.1 vs. uniprot
Match: A0A7S3GV69_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GV69_9STRA)

HSP 1 Score: 151 bits (382), Expect = 1.160e-44
Identity = 70/104 (67.31%), Postives = 86/104 (82.69%), Query Frame = 0

Query:   15 RYEGRGGVFDSVDVGPTGGPQRSVEGWILFVRNVHEEAQEDDIMDKFSEFGAVKNLHVNLDRRTGFVKGYCLVEFEKKEEAQLAIDEMDGSQLLEQDISVTWAF 118
            RY GRGGVF+++  G   GP +S+EGWI+FV NVH+EAQEDDI+DKFSE+G VKN+HVNLDRRTGFVKGY LVEFE+ ++AQ AI  +DG +LL+Q I V WAF
Sbjct:   54 RYNGRGGVFENIQRGSGAGPLQSIEGWIVFVTNVHQEAQEDDILDKFSEYGTVKNIHVNLDRRTGFVKGYALVEFEELKDAQAAIQGLDGKKLLDQVIQVDWAF 157

[Close]

BLAST of mRNA_P-littoralis_Contig200.76.1 vs. uniprot
Match: A0A7S2DBP5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DBP5_9STRA)

HSP 1 Score: 147 bits (370), Expect = 8.190e-43
Identity = 71/111 (63.96%), Postives = 86/111 (77.48%), Query Frame = 0

Query:    9 ARNETNRYEGRGGVFDSVDVGPTGGPQRSVEGWILFVRNVHEEAQEDDIMDKFSEFGAVKNLHVNLDRRTGFVKGYCLVEFEKKEEAQLAIDEMDGSQLLEQDISVTWAFV 119
            A +  +RY+GRGG+F+SV+     GP  SVEGWILF+R VHEEAQEDDI+DKF E G V+N+HVNLDRRTGFVKGY LVE+E  EEA  AI+  +G +LL Q ISV WAF+
Sbjct:   39 AMDTEDRYDGRGGIFESVETADGVGPAESVEGWILFIRGVHEEAQEDDILDKFLECGEVRNIHVNLDRRTGFVKGYALVEYESFEEATSAIETFNGQELLGQTISVDWAFL 149

[Close]

BLAST of mRNA_P-littoralis_Contig200.76.1 vs. uniprot
Match: A0A7S2S198_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S198_9STRA)

HSP 1 Score: 144 bits (364), Expect = 8.480e-42
Identity = 69/105 (65.71%), Postives = 86/105 (81.90%), Query Frame = 0

Query:   15 RYEGRGGVFDSVDVGPTGGPQRSVEGWILFVRNVHEEAQEDDIMDKFSEFGAVKNLHVNLDRRTGFVKGYCLVEFEKKEEAQLAIDEMDGSQLLEQDISVTWAFV 119
            RYEGRGGVFDS+  G   GP +SVEGWILFVR VHEEAQEDDI+DKF++FG V+N+ VNLDRRTGFVKGY L+E+ + +EA  A++ M+G ++L Q ISV WAF+
Sbjct:   52 RYEGRGGVFDSI-AGDGPGPAKSVEGWILFVRGVHEEAQEDDILDKFADFGEVRNIAVNLDRRTGFVKGYALIEYAEHDEAAKALEAMNGDEILGQTISVDWAFL 155

[Close]

BLAST of mRNA_P-littoralis_Contig200.76.1 vs. uniprot
Match: B3RRM4_TRIAD (RNA-binding protein 8A n=2 Tax=Trichoplax TaxID=10227 RepID=B3RRM4_TRIAD)

HSP 1 Score: 142 bits (357), Expect = 9.780e-41
Identity = 67/101 (66.34%), Postives = 83/101 (82.18%), Query Frame = 0

Query:   23 FDSVDVGP--TGGPQRSVEGWILFVRNVHEEAQEDDIMDKFSEFGAVKNLHVNLDRRTGFVKGYCLVEFEKKEEAQLAIDEMDGSQLLEQDISVTWAFVRG 121
            ++S+DV      GPQRSVEGWI+FV N+HEEAQEDD+ +KF+E+G VKNLH+NLDRRTGF+KGY LVEFE K+EAQ AID ++G+ LLEQ I V W FV+G
Sbjct:   54 YESMDVDGDYATGPQRSVEGWIVFVANIHEEAQEDDVYEKFAEYGDVKNLHLNLDRRTGFIKGYALVEFETKKEAQAAIDNLNGTNLLEQTIKVDWCFVKG 154

[Close]

BLAST of mRNA_P-littoralis_Contig200.76.1 vs. uniprot
Match: A0A813G6W1_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813G6W1_POLGL)

HSP 1 Score: 140 bits (354), Expect = 1.490e-40
Identity = 66/107 (61.68%), Postives = 81/107 (75.70%), Query Frame = 0

Query:   15 RYEGRGGVFDSV-DVGPTGGPQRSVEGWILFVRNVHEEAQEDDIMDKFSEFGAVKNLHVNLDRRTGFVKGYCLVEFEKKEEAQLAIDEMDGSQLLEQDISVTWAFVR 120
            RY G+ G FDS+ D G  GGP RS+EGW++ V  VHEEAQEDD+ + FSEFG +KNLH+NLDRRTGFVKGY  +E+E K+EA  AI  MDG  LL+Q +SV WAF +
Sbjct:   34 RYAGKAGQFDSLQDDGGEGGPARSIEGWVVIVSGVHEEAQEDDVFEAFSEFGEIKNLHLNLDRRTGFVKGYAFIEYEAKQEADSAIKGMDGQALLDQKLSVQWAFTK 140

[Close]

BLAST of mRNA_P-littoralis_Contig200.76.1 vs. uniprot
Match: A0A0G4H5U6_9ALVE (RRM domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4H5U6_9ALVE)

HSP 1 Score: 140 bits (354), Expect = 1.580e-40
Identity = 66/109 (60.55%), Postives = 84/109 (77.06%), Query Frame = 0

Query:   12 ETNRYEGRGGVFDSVDVGPTGGPQRSVEGWILFVRNVHEEAQEDDIMDKFSEFGAVKNLHVNLDRRTGFVKGYCLVEFEKKEEAQLAIDEMDGSQLLEQDISVTWAFVR 120
            +  RYEG+GGVF+S+    +G   +SVEGWI+ VR +HEEAQEDDI D FS +G +KNLH+NLDRRTGFVKGY L+E+E+ +EAQ AI  M+G +LL Q + V WAFVR
Sbjct:   37 DVERYEGQGGVFESLSHDASGTAAKSVEGWIVIVRGLHEEAQEDDIHDSFSGYGEIKNLHLNLDRRTGFVKGYALIEYEQFDEAQAAIHAMNGKELLSQPVHVDWAFVR 145

[Close]

BLAST of mRNA_P-littoralis_Contig200.76.1 vs. uniprot
Match: V4A0F1_LOTGI (RNA-binding protein 8A n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4A0F1_LOTGI)

HSP 1 Score: 140 bits (354), Expect = 2.070e-40
Identity = 73/118 (61.86%), Postives = 91/118 (77.12%), Query Frame = 0

Query:    5 SDSCARNETNRYEGRGGVFDSVDV-GPTGGPQRSVEGWILFVRNVHEEAQEDDIMDKFSEFGAVKNLHVNLDRRTGFVKGYCLVEFEKKEEAQLAIDEMDGSQLLEQDISVTWAFVRG 121
            SD   ++    YEG   V D++ V GP  GPQRSVEGWILF+  VHEEAQEDDI DKF+E+G +KNLH+NLDRRTGF+KGY LVE+E  +EAQ A+D ++GS++L Q I+V WAFVRG
Sbjct:   41 SDGPTKSGVEEYEGMD-VDDALPVDGP--GPQRSVEGWILFITGVHEEAQEDDIYDKFTEYGEIKNLHLNLDRRTGFLKGYALVEYETFKEAQSAMDALNGSEILAQKINVDWAFVRG 155

[Close]

BLAST of mRNA_P-littoralis_Contig200.76.1 vs. uniprot
Match: UPI001F043FF2 (RNA-binding protein 8A-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F043FF2)

HSP 1 Score: 140 bits (353), Expect = 3.210e-40
Identity = 71/101 (70.30%), Postives = 81/101 (80.20%), Query Frame = 0

Query:   23 FDSVDVGPTG--GPQRSVEGWILFVRNVHEEAQEDDIMDKFSEFGAVKNLHVNLDRRTGFVKGYCLVEFEKKEEAQLAIDEMDGSQLLEQDISVTWAFVRG 121
            +D+++    G  GPQRSVEGWILFV NVHEEAQEDDI D FSEFG +KNL  NLDRRTGF+KGY LVEFE  +EAQ A D ++GS+LLEQ ISV WAFVRG
Sbjct:   53 YDTIETEQGGETGPQRSVEGWILFVTNVHEEAQEDDIYDLFSEFGDIKNLQANLDRRTGFMKGYALVEFETFKEAQAARDGLNGSELLEQKISVDWAFVRG 153

The following BLAST results are available for this feature:

BLAST of mRNA_P-littoralis_Contig200.76.1 vs. uniprot

BLAST of mRNA_P-littoralis_Contig200.76.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KSN1_9PHAE	1.150e-65	92.52	RRM domain-containing protein n=2 Tax=Ectocarpus T...	[more]
A0A7S2G621_9STRA	6.040e-50	72.48	Hypothetical protein n=1 Tax=Florenciella parvula ...	[more]
A0A7S3GV69_9STRA	1.160e-44	67.31	Hypothetical protein n=1 Tax=Spumella elongata Tax...	[more]
A0A7S2DBP5_9STRA	8.190e-43	63.96	Hypothetical protein n=1 Tax=Dictyocha speculum Ta...	[more]
A0A7S2S198_9STRA	8.480e-42	65.71	Hypothetical protein n=2 Tax=Rhizochromulina marin...	[more]
B3RRM4_TRIAD	9.780e-41	66.34	RNA-binding protein 8A n=2 Tax=Trichoplax TaxID=10...	[more]
A0A813G6W1_POLGL	1.490e-40	61.68	Hypothetical protein n=1 Tax=Polarella glacialis T...	[more]
A0A0G4H5U6_9ALVE	1.580e-40	60.55	RRM domain-containing protein n=1 Tax=Chromera vel...	[more]
V4A0F1_LOTGI	2.070e-40	61.86	RNA-binding protein 8A n=1 Tax=Lottia gigantea Tax...	[more]
UPI001F043FF2	3.210e-40	70.30	RNA-binding protein 8A-like n=1 Tax=Xenia sp. Carn...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 42..115 e-value: 5.3E-18 score: 75.8
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 43..110 e-value: 6.9E-18 score: 64.3
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 41..119 score: 15.493864
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 2..121 e-value: 3.7E-28 score: 100.4
IPR008111	RNA-binding motif protein 8	PANTHER	PTHR45894	RNA-BINDING PROTEIN 8A	coord: 11..121
IPR033744	RBM8, RNA recognition motif	CDD	cd12324	RRM_RBM8	coord: 35..121 e-value: 3.66242E-60 score: 177.41
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 6..117

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-littoralis_Contig200	contig	P-littoralis_Contig200:255134..256026 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Pylaiella littoralis U1_48 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-littoralis_Contig200.76.1	mRNA_P-littoralis_Contig200.76.1	Pylaiella littoralis U1_48	mRNA	P-littoralis_Contig200 255134..256026 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-littoralis_Contig200.76.1 ID=prot_P-littoralis_Contig200.76.1|Name=mRNA_P-littoralis_Contig200.76.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=121bp
CSRRSDSCARNETNRYEGRGGVFDSVDVGPTGGPQRSVEGWILFVRNVHE
EAQEDDIMDKFSEFGAVKNLHVNLDRRTGFVKGYCLVEFEKKEEAQLAID
EMDGSQLLEQDISVTWAFVRG

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR008111	RNA-bd_8
IPR033744	RRM_RBM8
IPR035979	RBD_domain_sf