mRNA_P-littoralis_Contig200.76.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig200.76.1 vs. uniprot
Match: A0A6H5KSN1_9PHAE (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KSN1_9PHAE) HSP 1 Score: 206 bits (523), Expect = 1.150e-65 Identity = 99/107 (92.52%), Postives = 104/107 (97.20%), Query Frame = 1
Query: 43 RYEGRGGVFDSVDVGPTGGPQRSVEGWILFVRNVHEEAQEDDIMDKFSEFGAVKNLHVNLDRRTGFVKGYCLVEFEKKEEAQLAIDEMDGSQLLEQDISVTWAFVRG 363
RYEGRGGVF+SVDVG GGPQRSVEGWILFVRNVHEEAQEDDIMDKFSE+GAVKNLHVNLDRRTGFVKGYCLVEFEKKEEAQ AIDEMDGSQLL+QDISV+WAFV+G
Sbjct: 75 RYEGRGGVFESVDVGSAGGPQRSVEGWILFVRNVHEEAQEDDIMDKFSEYGAVKNLHVNLDRRTGFVKGYCLVEFEKKEEAQAAIDEMDGSQLLDQDISVSWAFVKG 181
BLAST of mRNA_P-littoralis_Contig200.76.1 vs. uniprot
Match: A0A7S2G621_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G621_9STRA) HSP 1 Score: 165 bits (418), Expect = 6.040e-50 Identity = 79/109 (72.48%), Postives = 93/109 (85.32%), Query Frame = 1
Query: 31 NETNRYEGRGGVFDSVDVGPTGGPQRSVEGWILFVRNVHEEAQEDDIMDKFSEFGAVKNLHVNLDRRTGFVKGYCLVEFEKKEEAQLAIDEMDGSQLLEQDISVTWAFV 357
N+ RY+GRGGVF+SVD G GGP +SVEGWILFVRNVHEEAQEDDI+DKFSE G V+N+HVNLDRRTGFVKGY LVEFE +EEA+ AI+ ++G +LL Q ISV WAF+
Sbjct: 51 NDEERYDGRGGVFESVDAGGEGGPLQSVEGWILFVRNVHEEAQEDDILDKFSESGDVRNIHVNLDRRTGFVKGYALVEFESREEAENAIETLNGEELLGQTISVDWAFL 159
BLAST of mRNA_P-littoralis_Contig200.76.1 vs. uniprot
Match: A0A7S3GV69_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GV69_9STRA) HSP 1 Score: 151 bits (382), Expect = 1.160e-44 Identity = 70/104 (67.31%), Postives = 86/104 (82.69%), Query Frame = 1
Query: 43 RYEGRGGVFDSVDVGPTGGPQRSVEGWILFVRNVHEEAQEDDIMDKFSEFGAVKNLHVNLDRRTGFVKGYCLVEFEKKEEAQLAIDEMDGSQLLEQDISVTWAF 354
RY GRGGVF+++ G GP +S+EGWI+FV NVH+EAQEDDI+DKFSE+G VKN+HVNLDRRTGFVKGY LVEFE+ ++AQ AI +DG +LL+Q I V WAF
Sbjct: 54 RYNGRGGVFENIQRGSGAGPLQSIEGWIVFVTNVHQEAQEDDILDKFSEYGTVKNIHVNLDRRTGFVKGYALVEFEELKDAQAAIQGLDGKKLLDQVIQVDWAF 157
BLAST of mRNA_P-littoralis_Contig200.76.1 vs. uniprot
Match: A0A7S2DBP5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DBP5_9STRA) HSP 1 Score: 147 bits (370), Expect = 8.190e-43 Identity = 71/111 (63.96%), Postives = 86/111 (77.48%), Query Frame = 1
Query: 25 ARNETNRYEGRGGVFDSVDVGPTGGPQRSVEGWILFVRNVHEEAQEDDIMDKFSEFGAVKNLHVNLDRRTGFVKGYCLVEFEKKEEAQLAIDEMDGSQLLEQDISVTWAFV 357
A + +RY+GRGG+F+SV+ GP SVEGWILF+R VHEEAQEDDI+DKF E G V+N+HVNLDRRTGFVKGY LVE+E EEA AI+ +G +LL Q ISV WAF+
Sbjct: 39 AMDTEDRYDGRGGIFESVETADGVGPAESVEGWILFIRGVHEEAQEDDILDKFLECGEVRNIHVNLDRRTGFVKGYALVEYESFEEATSAIETFNGQELLGQTISVDWAFL 149
BLAST of mRNA_P-littoralis_Contig200.76.1 vs. uniprot
Match: A0A7S2S198_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S198_9STRA) HSP 1 Score: 144 bits (364), Expect = 8.480e-42 Identity = 69/105 (65.71%), Postives = 86/105 (81.90%), Query Frame = 1
Query: 43 RYEGRGGVFDSVDVGPTGGPQRSVEGWILFVRNVHEEAQEDDIMDKFSEFGAVKNLHVNLDRRTGFVKGYCLVEFEKKEEAQLAIDEMDGSQLLEQDISVTWAFV 357
RYEGRGGVFDS+ G GP +SVEGWILFVR VHEEAQEDDI+DKF++FG V+N+ VNLDRRTGFVKGY L+E+ + +EA A++ M+G ++L Q ISV WAF+
Sbjct: 52 RYEGRGGVFDSI-AGDGPGPAKSVEGWILFVRGVHEEAQEDDILDKFADFGEVRNIAVNLDRRTGFVKGYALIEYAEHDEAAKALEAMNGDEILGQTISVDWAFL 155
BLAST of mRNA_P-littoralis_Contig200.76.1 vs. uniprot
Match: B3RRM4_TRIAD (RNA-binding protein 8A n=2 Tax=Trichoplax TaxID=10227 RepID=B3RRM4_TRIAD) HSP 1 Score: 142 bits (357), Expect = 9.780e-41 Identity = 67/101 (66.34%), Postives = 83/101 (82.18%), Query Frame = 1
Query: 67 FDSVDVGP--TGGPQRSVEGWILFVRNVHEEAQEDDIMDKFSEFGAVKNLHVNLDRRTGFVKGYCLVEFEKKEEAQLAIDEMDGSQLLEQDISVTWAFVRG 363
++S+DV GPQRSVEGWI+FV N+HEEAQEDD+ +KF+E+G VKNLH+NLDRRTGF+KGY LVEFE K+EAQ AID ++G+ LLEQ I V W FV+G
Sbjct: 54 YESMDVDGDYATGPQRSVEGWIVFVANIHEEAQEDDVYEKFAEYGDVKNLHLNLDRRTGFIKGYALVEFETKKEAQAAIDNLNGTNLLEQTIKVDWCFVKG 154
BLAST of mRNA_P-littoralis_Contig200.76.1 vs. uniprot
Match: A0A813G6W1_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813G6W1_POLGL) HSP 1 Score: 140 bits (354), Expect = 1.490e-40 Identity = 66/107 (61.68%), Postives = 81/107 (75.70%), Query Frame = 1
Query: 43 RYEGRGGVFDSV-DVGPTGGPQRSVEGWILFVRNVHEEAQEDDIMDKFSEFGAVKNLHVNLDRRTGFVKGYCLVEFEKKEEAQLAIDEMDGSQLLEQDISVTWAFVR 360
RY G+ G FDS+ D G GGP RS+EGW++ V VHEEAQEDD+ + FSEFG +KNLH+NLDRRTGFVKGY +E+E K+EA AI MDG LL+Q +SV WAF +
Sbjct: 34 RYAGKAGQFDSLQDDGGEGGPARSIEGWVVIVSGVHEEAQEDDVFEAFSEFGEIKNLHLNLDRRTGFVKGYAFIEYEAKQEADSAIKGMDGQALLDQKLSVQWAFTK 140
BLAST of mRNA_P-littoralis_Contig200.76.1 vs. uniprot
Match: A0A0G4H5U6_9ALVE (RRM domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4H5U6_9ALVE) HSP 1 Score: 140 bits (354), Expect = 1.580e-40 Identity = 66/109 (60.55%), Postives = 84/109 (77.06%), Query Frame = 1
Query: 34 ETNRYEGRGGVFDSVDVGPTGGPQRSVEGWILFVRNVHEEAQEDDIMDKFSEFGAVKNLHVNLDRRTGFVKGYCLVEFEKKEEAQLAIDEMDGSQLLEQDISVTWAFVR 360
+ RYEG+GGVF+S+ +G +SVEGWI+ VR +HEEAQEDDI D FS +G +KNLH+NLDRRTGFVKGY L+E+E+ +EAQ AI M+G +LL Q + V WAFVR
Sbjct: 37 DVERYEGQGGVFESLSHDASGTAAKSVEGWIVIVRGLHEEAQEDDIHDSFSGYGEIKNLHLNLDRRTGFVKGYALIEYEQFDEAQAAIHAMNGKELLSQPVHVDWAFVR 145
BLAST of mRNA_P-littoralis_Contig200.76.1 vs. uniprot
Match: V4A0F1_LOTGI (RNA-binding protein 8A n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4A0F1_LOTGI) HSP 1 Score: 140 bits (354), Expect = 2.070e-40 Identity = 73/118 (61.86%), Postives = 91/118 (77.12%), Query Frame = 1
Query: 13 SDSCARNETNRYEGRGGVFDSVDV-GPTGGPQRSVEGWILFVRNVHEEAQEDDIMDKFSEFGAVKNLHVNLDRRTGFVKGYCLVEFEKKEEAQLAIDEMDGSQLLEQDISVTWAFVRG 363
SD ++ YEG V D++ V GP GPQRSVEGWILF+ VHEEAQEDDI DKF+E+G +KNLH+NLDRRTGF+KGY LVE+E +EAQ A+D ++GS++L Q I+V WAFVRG
Sbjct: 41 SDGPTKSGVEEYEGMD-VDDALPVDGP--GPQRSVEGWILFITGVHEEAQEDDIYDKFTEYGEIKNLHLNLDRRTGFLKGYALVEYETFKEAQSAMDALNGSEILAQKINVDWAFVRG 155
BLAST of mRNA_P-littoralis_Contig200.76.1 vs. uniprot
Match: UPI001F043FF2 (RNA-binding protein 8A-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F043FF2) HSP 1 Score: 140 bits (353), Expect = 3.210e-40 Identity = 71/101 (70.30%), Postives = 81/101 (80.20%), Query Frame = 1
Query: 67 FDSVDVGPTG--GPQRSVEGWILFVRNVHEEAQEDDIMDKFSEFGAVKNLHVNLDRRTGFVKGYCLVEFEKKEEAQLAIDEMDGSQLLEQDISVTWAFVRG 363
+D+++ G GPQRSVEGWILFV NVHEEAQEDDI D FSEFG +KNL NLDRRTGF+KGY LVEFE +EAQ A D ++GS+LLEQ ISV WAFVRG
Sbjct: 53 YDTIETEQGGETGPQRSVEGWILFVTNVHEEAQEDDIYDLFSEFGDIKNLQANLDRRTGFMKGYALVEFETFKEAQAARDGLNGSELLEQKISVDWAFVRG 153 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig200.76.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig200.76.1 >prot_P-littoralis_Contig200.76.1 ID=prot_P-littoralis_Contig200.76.1|Name=mRNA_P-littoralis_Contig200.76.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=121bp CSRRSDSCARNETNRYEGRGGVFDSVDVGPTGGPQRSVEGWILFVRNVHEback to top mRNA from alignment at P-littoralis_Contig200:255134..256026+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig200.76.1 ID=mRNA_P-littoralis_Contig200.76.1|Name=mRNA_P-littoralis_Contig200.76.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=893bp|location=Sequence derived from alignment at P-littoralis_Contig200:255134..256026+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig200:255134..256026+ >mRNA_P-littoralis_Contig200.76.1 ID=mRNA_P-littoralis_Contig200.76.1|Name=mRNA_P-littoralis_Contig200.76.1|organism=Pylaiella littoralis U1_48|type=CDS|length=363bp|location=Sequence derived from alignment at P-littoralis_Contig200:255134..256026+ (Pylaiella littoralis U1_48)back to top |