prot_P-littoralis_Contig17.191.4 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig17.191.4
Unique Nameprot_P-littoralis_Contig17.191.4
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length786
Homology
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BLAST of mRNA_P-littoralis_Contig17.191.4 vs. uniprot
Match: D7FJH7_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJH7_ECTSI)

HSP 1 Score: 380 bits (976), Expect = 9.360e-118
Identity = 430/658 (65.35%), Postives = 468/658 (71.12%), Query Frame = 0 
Query:  147 VSADCRLRRGLRNLGRLRQPQNVLELLAVARGRGETMNLRVFNAAITAVAPCEEGCRYALRLLVLMQEERIAPDRFTLTAIVASCFRCQKWDVAHGVLQTMQRQGMRPLDMRASRLTTAPGDAGEARDRVLRLLRHLRSTE--GEEGVRLASPPSALPEQRTGGPGSGSGGGDDGVSGQGGPRQRDESGTVGKEAVRGKKRMVVTGAREAQLGRSGEVYAQQXXXXXXXXXXXXNGDGGETXXXXXXXXXXXXXLSNDKGRRGSAAEAGE------RHAGXXXXXXXXXXXXXXXKTVEE-----------LMAAGMRPPQEAFLSELKKAANTKSWNRALELLDGLREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKMRAAQGVKTNLSSYRAVMHAHCRAGDWASALGLLEDARRDQIKPGTGDLRAMVEACGKAEQHERALSLLEEMRSEGMNLRRTGEKLWWVFDNCRDKQVKDRAWLLMEVEETRERLRLRAERNAQKAEAAEAAAVATA 785
            VSA+CRLRR LR LG LRQPQNVLELLA A+GRG+ ++LRVFNAAITAVAPCEEGC++ALRLL+LMQEERIAPDRFTLTAIVASC RCQKWDVAHGVL+ M+ QGMRPLD+R SRLTTAPG+AGEARDRV RLL  LRS +   EEG+R   PP  L   R GG        D  V      RQR     V   + +G K     GAR ++    G                  +  G                + N K +  S     E      R A                  V             L+ A   P ++ FLSELK AANTKSW RAL LLDG+RE                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    +M +A GV TN+SS+RA M A+CRAGDWASAL LLEDARR Q+KP T DLR MVEACGKAEQHERALSLLEEMRSEGMNLRRTGEKLWWVF+ CRDK+VK+RAW+LMEVE+TRER+RLRAERNAQKA A E+ A A A
Sbjct:   48 VSAECRLRRELRKLGNLRQPQNVLELLAAAKGRGDPLSLRVFNAAITAVAPCEEGCKFALRLLILMQEERIAPDRFTLTAIVASCLRCQKWDVAHGVLEKMELQGMRPLDLRPSRLTTAPGEAGEARDRVRRLLERLRSADLGPEEGLR---PPDQL---RKGGXXXXX---DFTVRDF---RQRRVKSVVRVTSGKGGK-----GARPSENNSRGTF-------RHVGTTAASSPAGSAVLVEVPPKALSSFRMENCKFQSTSCRRFSENILPPLREAYLKETSKNLTSSPTFSNAVASSAADGDDKVGVLLTAETPPGEKFFLSELKAAANTKSWERALNLLDGMREAGYAPHPGAYACAIRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLLLQMCSAPGVSTNMSSFRAAMDAYCRAGDWASALRLLEDARRYQLKPNTADLRTMVEACGKAEQHERALSLLEEMRSEGMNLRRTGEKLWWVFNTCRDKKVKERAWVLMEVEQTRERVRLRAERNAQKAAAEESEAAAAA 681
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig17.191.4 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FJH7_ECTSI9.360e-11865.35PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 753..780
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 331..348
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 288..415
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 49..73
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 121..144
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 121..139
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 360..376
NoneNo IPR availablePANTHERPTHR47942TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATEDcoord: 179..649
coord: 525..736
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 148..290
e-value: 7.7E-14
score: 53.8
coord: 557..782
e-value: 5.1E-44
score: 152.9
coord: 415..556
e-value: 4.1E-20
score: 74.4
IPR033443Pentacotripeptide-repeat region of PRORPPFAMPF17177PPR_longcoord: 552..723
e-value: 3.5E-17
score: 62.4
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 625..654
e-value: 5.1E-4
score: 18.0
coord: 486..517
e-value: 2.8E-7
score: 28.3
coord: 590..622
e-value: 2.4E-5
score: 22.2
coord: 555..586
e-value: 8.6E-6
score: 23.6
coord: 699..725
e-value: 5.9E-4
score: 17.8
coord: 661..693
e-value: 3.3E-4
score: 18.6
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 488..514
e-value: 5.3E-4
score: 20.0
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 552..586
score: 11.268274
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 587..621
score: 10.621557
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 658..692
score: 10.632519
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 482..516
score: 10.654441
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 220..254
score: 9.985802

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig17contigP-littoralis_Contig17:780701..790596 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig17.191.4mRNA_P-littoralis_Contig17.191.4Pylaiella littoralis U1_48mRNAP-littoralis_Contig17 779955..790649 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig17.191.4 ID=prot_P-littoralis_Contig17.191.4|Name=mRNA_P-littoralis_Contig17.191.4|organism=Pylaiella littoralis U1_48|type=polypeptide|length=786bp
MARGTRRRLTGAVPLTFFALPVADGVLAYDWTTAAPSCALRSGSGRIPTA
SSSSPVLPVQGLSQRRLGESGDRRDGLCSVRSLRRARGGVRSNRSRDGSA
VQMTASDSAVVELSINSLGAGEATRRRQQQQQQQDGDDNDLAGSGRVSAD
CRLRRGLRNLGRLRQPQNVLELLAVARGRGETMNLRVFNAAITAVAPCEE
GCRYALRLLVLMQEERIAPDRFTLTAIVASCFRCQKWDVAHGVLQTMQRQ
GMRPLDMRASRLTTAPGDAGEARDRVLRLLRHLRSTEGEEGVRLASPPSA
LPEQRTGGPGSGSGGGDDGVSGQGGPRQRDESGTVGKEAVRGKKRMVVTG
AREAQLGRSGEVYAQQQQQQQQRRRRLLNGDGGETKTRAGAGAGAGAGLS
NDKGRRGSAAEAGERHAGGGAAAAVVLEAAGGEKTVEELMAAGMRPPQEA
FLSELKKAANTKSWNRALELLDGLREAGFQPLPGAYACAMRACGKAGKWE
HSLALMDEMRSRGVEPGEGCNVMALKACADAGLWEKTLGMLKSMRASGVN
RSESTFVVAMKACGDAGQWEKALALMDDMRRDGMPPMETTYTTAMKACGS
TGEWEQTLKLFYEMQSIGIPPTEQCYTAAIRACAKADKTEKAYSLLLKMR
AAQGVKTNLSSYRAVMHAHCRAGDWASALGLLEDARRDQIKPGTGDLRAM
VEACGKAEQHERALSLLEEMRSEGMNLRRTGEKLWWVFDNCRDKQVKDRA
WLLMEVEETRERLRLRAERNAQKAEAAEAAAVATA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR033443PPR_long
IPR002885Pentatricopeptide_repeat